Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RBM4	Gene	0	202.67	482.78	235.09	468.35	268.21	502.58	122.83
2	409738	Transcript	0	0.00	1.37	0.00	0.00	1.82	1.23	0.00
3	310137	Transcript	0	128.61	360.06	230.22	319.03	210.89	273.33	69.35
4	409713	Transcript	0	4.79	7.68	2.71	14.76	5.24	13.36	3.04
5	409372	Transcript	0	3.23	17.58	4.64	7.88	12.24	6.62	2.88
6	393979	Transcript	0	0.00	1.63	0.00	0.00	1.18	0.00	0.00
7	310092	Transcript	0	104.19	101.11	80.44	134.08	191.34	155.15	48.80
8	408993	Transcript	0	31.33	126.09	40.20	166.69	17.38	200.17	15.61
9	398692	Transcript	0	84.92	182.72	159.70	294.75	151.69	203.68	109.48
10	409406	Transcript	1	36.07	15.46	20.37	17.40	7.77	13.80	6.95
11	ER1a	ExonRegion	0	7.22	8.50	4.34	4.49	7.77	4.41	1.48
12	ER1b	ExonRegion	0	8.45	8.50	4.74	4.99	8.91	6.13	2.02
13	ER1c	ExonRegion	0	176.36	402.26	196.24	481.84	238.46	384.32	86.72
14	E1a_E2a	KnownJunction	0	0.00	15.61	0.59	8.10	4.13	0.00	0.72
15	E1a_E3a	KnownJunction	1	86.00	360.94	235.33	347.61	226.26	285.74	70.24
16	E1a_E4a	KnownJunction	0	0.00	1.63	0.00	0.00	1.18	0.00	0.00
17	E1a_E6b	NovelJunction	0	54.29	112.07	37.05	235.12	48.16	195.58	24.66
18	E1a_E7a	KnownJunction	0	0.75	1.39	0.00	9.56	1.18	8.33	0.00
19	I1	Intron	0	49.49	45.46	41.82	14.92	25.34	8.93	9.36
20	I1_AR2	ActiveIntronRegion	0	82.09	47.34	48.02	15.53	28.04	3.46	10.69
21	I1_SR2	SilentIntronRegion	1	84.90	52.07	58.87	19.88	34.80	6.41	8.10
22	I1_AR3	ActiveIntronRegion	0	54.09	48.43	45.30	13.99	26.04	8.49	9.30
23	I1_SR4	SilentIntronRegion	0	51.79	32.03	45.99	12.08	21.19	9.10	7.35
24	I1_AR6	ActiveIntronRegion	0	70.15	64.97	57.09	17.91	44.10	10.03	14.14
25	E2_Aa	NovelBoundary	0	48.38	113.86	80.95	27.01	56.53	12.76	26.69
26	ER2a	ExonRegion	0	3.44	16.90	5.04	7.02	26.13	7.73	2.41
27	E2_Da	NovelBoundary	0	61.67	88.38	52.11	21.29	39.12	10.16	17.20
28	E2a_E3a	KnownJunction	0	6.24	20.23	8.28	8.51	6.45	12.14	5.52
29	ER3a	ExonRegion	0	175.34	523.91	364.68	439.84	331.54	413.96	110.84
30	E3_Da	KnownBoundary	0	230.47	545.42	450.61	427.63	283.87	476.10	120.20
31	E3a_E4a	KnownJunction	0	0.00	1.37	0.00	0.00	1.82	1.23	0.00
32	ER3b	ExonRegion	0	174.48	511.30	335.90	405.01	261.33	408.72	93.73
33	E3_Db	KnownBoundary	0	116.78	378.86	196.92	292.50	159.55	335.72	65.80
34	ER3c	ExonRegion	0	121.41	421.97	243.97	373.48	203.79	329.86	80.64
35	E3c_E4a	KnownJunction	1	135.82	298.15	216.47	264.57	217.99	216.81	58.06
36	E3c_E6b	NovelJunction	1	24.42	7.59	10.17	29.64	0.00	15.81	1.66
37	ER4a	ExonRegion	1	190.76	307.34	336.83	272.28	332.59	245.62	73.84
38	E4_Da	KnownBoundary	1	294.54	353.98	543.44	399.32	706.94	408.72	108.53
39	ER4b	ExonRegion	1	139.58	192.33	193.74	167.03	188.29	183.46	51.82
40	E4_Db	NovelBoundary	1	98.70	24.70	55.10	17.53	40.87	18.57	5.53
41	I4	Intron	1	87.11	19.09	41.96	15.40	38.04	7.91	10.17
42	I4_AR1	ActiveIntronRegion	1	87.39	19.14	42.10	15.45	38.16	7.93	10.20
43	I4	Intron	0	42.49	16.78	25.79	15.51	23.56	11.45	7.11
44	I4_AR2	ActiveIntronRegion	0	41.68	18.95	29.83	14.39	25.16	8.33	8.30
45	I4_AR3	ActiveIntronRegion	0	50.17	27.70	42.08	24.26	28.48	16.71	5.92
46	I4_AR4	ActiveIntronRegion	0	48.96	30.37	35.71	22.45	24.06	19.27	6.75
47	I4_AR6	ActiveIntronRegion	0	75.96	27.64	44.60	29.05	49.65	20.00	13.40
48	ER5a	ExonRegion	0	104.19	101.11	80.44	134.08	191.34	155.15	48.80
49	E5_Ab	KnownBoundary	0	303.99	338.48	239.15	427.58	701.22	500.46	167.10
50	ER5b	ExonRegion	0	581.52	590.68	402.92	683.15	1194.90	726.57	287.95
51	E5_Da	KnownBoundary	0	69.71	142.05	75.37	192.32	82.16	210.59	21.61
52	E5a_E6b	KnownJunction	0	789.97	746.63	498.72	851.77	1152.30	919.39	390.59
53	ER5c	ExonRegion	0	31.14	102.02	34.71	126.13	24.25	135.44	11.65
54	E5b_E6b	KnownJunction	0	31.53	150.17	45.68	207.25	10.51	264.89	19.58
55	ER6a	ExonRegion	0	36.07	15.46	20.37	17.40	7.77	13.80	6.95
56	E6_Ab	KnownBoundary	0	27.77	28.90	9.80	18.72	4.43	19.75	10.99
57	ER6b	ExonRegion	0	619.34	1337.50	501.91	1400.19	697.17	1536.13	411.52
58	E6_Da	NovelBoundary	0	79.31	88.09	42.59	63.53	72.43	30.36	25.95
59	E6a_E7a	KnownJunction	0	540.04	1142.52	438.90	1140.91	651.91	1340.36	308.43
60	E6a_E8a	KnownJunction	0	84.92	182.72	159.70	294.75	151.69	203.68	109.48
61	I6	Intron	0	76.21	39.63	48.39	21.28	33.57	16.09	17.25
62	I6_AR1	ActiveIntronRegion	0	78.20	48.87	49.91	33.26	53.99	23.40	20.07
63	I6_SR1	SilentIntronRegion	0	40.67	42.37	34.69	11.58	16.71	10.77	10.91
64	I6_AR2	ActiveIntronRegion	0	72.47	38.39	54.83	15.67	26.64	17.00	17.22
65	I6_SR2	SilentIntronRegion	0	100.89	58.63	59.84	16.21	20.93	19.39	17.26
66	I6_AR3	ActiveIntronRegion	0	85.73	34.99	48.01	18.32	27.18	12.10	17.25
67	E7_Aa	NovelBoundary	1	201.16	35.23	159.94	11.41	10.79	11.71	12.47
68	ER7a	ExonRegion	0	330.53	872.63	259.08	805.57	427.69	1002.69	215.41
69	E7a_E8a	KnownJunction	0	355.40	726.98	295.27	806.72	295.98	1037.26	247.32
70	I7	Intron	0	54.89	31.60	30.38	16.02	31.58	9.93	15.52
71	I7_AR1	ActiveIntronRegion	0	54.95	31.63	30.41	16.03	31.61	9.94	15.54
72	ER8a	ExonRegion	0	299.00	794.84	297.32	832.42	322.20	1030.18	242.20
73	ER8b	ExonRegion	0	24.95	65.04	19.28	73.82	36.28	105.93	18.21
74	ER8c	ExonRegion	0	8.84	13.97	5.42	19.95	9.31	18.39	6.07
75	IG13	Intergenic	0	18.69	8.11	10.08	6.19	17.83	3.85	9.44
76	IG13_AR1	ActiveIntergenicRegion	0	13.29	11.72	14.10	4.73	16.25	4.42	10.84
77	IG13_SR1	SilentIntergenicRegion	0	49.16	27.90	29.96	17.34	36.43	7.24	24.26
78	IG13_AR2	ActiveIntergenicRegion	0	53.41	37.86	30.82	17.87	45.35	6.54	26.20
79	IG13_SR2	SilentIntergenicRegion	0	39.45	18.32	19.50	14.74	34.49	3.96	19.16
80	IG13_AR3	ActiveIntergenicRegion	0	3.04	1.21	2.09	0.00	13.56	3.68	1.35
81	IG13_AR4	ActiveIntergenicRegion	0	31.25	8.50	13.33	4.18	21.95	3.07	10.18
82	IG13_SR3	SilentIntergenicRegion	0	9.82	3.34	7.25	2.56	9.69	1.90	7.88
83	IG13_AR7	ActiveIntergenicRegion	0	16.93	2.23	10.17	2.29	48.27	2.34	2.88
84	IG13_SR4	SilentIntergenicRegion	0	17.29	4.93	8.01	4.25	11.25	2.45	6.46
85	IG13_SR5	SilentIntergenicRegion	0	12.25	1.44	7.64	3.65	7.04	3.61	3.20
86	IG13_SR6	SilentIntergenicRegion	0	21.12	7.85	12.91	10.04	25.08	4.58	12.16
87	IG13_AR10	ActiveIntergenicRegion	0	11.30	11.22	7.92	6.95	16.16	6.91	14.72
88	IG13_AR11	ActiveIntergenicRegion	0	60.19	23.90	22.85	20.99	37.39	11.03	30.80
89	IG13_SR9	SilentIntergenicRegion	0	10.57	4.20	5.28	3.95	15.25	4.39	5.16