Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SAPS3	Gene	0	279.98	217.99	277.84	313.86	382.77	289.20	169.80
2	265636	Transcript	0	16.00	33.79	10.20	48.19	12.98	23.41	13.51
3	393801	Transcript	0	8.00	17.52	8.19	21.39	18.96	19.28	9.67
4	265637	Transcript	0	0	0	0	0	0	0	0
5	393799	Transcript	0	0	0	0	0	0	0	0
6	393800	Transcript	0	0	0	0	0	0	0	0
7	ER1a	ExonRegion	0	9.75	12.59	9.95	15.93	17.15	4.68	8.89
8	ER1b	ExonRegion	0	46.35	160.18	43.79	222.54	119.08	145.76	37.65
9	E1a_E2a	KnownJunction	1	12.92	54.57	3.58	74.64	9.13	41.78	13.96
10	E1a_E3a	KnownJunction	0	15.50	132.99	21.58	180.18	15.63	131.27	16.32
11	ER2a	ExonRegion	0	23.10	50.20	17.83	52.53	16.50	30.90	17.57
12	E2a_E3a	KnownJunction	1	18.24	17.81	9.43	49.69	9.15	16.27	13.63
13	ER3a	ExonRegion	0	126.97	201.47	183.90	273.88	153.78	220.98	123.32
14	E3a_E4a	KnownJunction	0	236.03	197.77	356.46	272.08	267.69	282.20	177.72
15	E3a_E5a	NovelJunction	0	29.62	16.50	34.10	23.70	23.28	8.84	12.57
16	ER4a	ExonRegion	0	255.11	307.54	370.58	435.00	309.84	423.06	202.57
17	E4a_E5a	KnownJunction	0	242.49	284.34	350.64	439.50	375.44	370.91	200.07
18	ER5a	ExonRegion	0	367.34	347.31	461.19	476.29	405.58	435.79	230.30
19	E5a_E6a	KnownJunction	0	446.49	390.66	493.95	543.85	433.42	442.60	187.21
20	E5a_E7a	NovelJunction	1	2.95	2.55	0.00	3.01	1.84	20.18	2.32
21	ER6a	ExonRegion	0	475.31	327.25	566.09	508.77	487.02	437.00	260.58
22	E6a_E7a	KnownJunction	0	420.35	245.17	441.87	428.47	341.23	314.95	176.12
23	E7_Aa	NovelBoundary	0	36.37	57.80	24.93	48.11	1.15	80.69	3.75
24	ER7a	ExonRegion	0	362.26	239.46	427.65	367.49	393.29	316.85	186.68
25	E7a_E8a	KnownJunction	0	364.41	257.88	454.38	357.14	428.92	301.90	214.81
26	E7a_E9a	NovelJunction	0	1.55	14.19	3.77	7.07	4.33	2.87	0.00
27	ER8a	ExonRegion	0	435.39	271.71	495.69	448.48	438.77	396.13	248.95
28	E8a_E9a	KnownJunction	0	291.19	187.18	328.35	317.53	300.17	289.81	152.67
29	ER9a	ExonRegion	0	320.30	229.22	386.95	414.63	366.51	305.50	198.22
30	E9a_E10a	KnownJunction	0	223.95	207.91	269.72	341.40	326.96	259.39	147.80
31	ER10a	ExonRegion	0	236.84	237.45	307.18	356.88	359.76	260.76	171.67
32	E10a_E11a	KnownJunction	0	186.49	219.02	245.49	281.45	335.23	216.38	153.33
33	E10a_E12a	KnownJunction	0	21.76	11.45	30.09	18.21	4.26	23.24	5.82
34	ER11a	ExonRegion	0	388.10	259.65	398.93	380.50	476.69	288.21	208.21
35	E11a_E12a	KnownJunction	0	334.47	290.01	410.69	354.62	494.05	335.75	215.63
36	ER12a	ExonRegion	0	524.58	308.07	529.46	475.49	631.90	377.13	284.53
37	E12a_E13a	KnownJunction	0	319.08	273.17	362.92	343.73	503.22	309.51	214.05
38	ER13a	ExonRegion	0	316.39	262.48	361.61	374.20	513.31	299.52	257.57
39	E13a_E14a	KnownJunction	0	341.84	250.89	358.67	405.93	542.87	283.03	285.40
40	ER14a	ExonRegion	0	322.88	293.96	351.74	419.56	577.58	348.89	273.45
41	E14a_E15a	KnownJunction	0	256.92	239.96	258.54	319.30	426.04	249.35	196.15
42	ER15a	ExonRegion	0	336.65	291.74	324.32	419.69	560.37	311.55	263.78
43	E15a_E16a	KnownJunction	0	256.34	214.32	260.09	381.69	463.78	253.07	203.96
44	E15a_E17a	KnownJunction	0	67.78	48.81	54.66	53.45	207.96	39.72	47.22
45	ER16a	ExonRegion	0	288.62	206.08	272.99	326.49	403.31	234.66	162.93
46	E16a_E17a	KnownJunction	0	294.33	139.42	238.00	258.15	326.52	195.42	127.61
47	ER17a	ExonRegion	0	481.99	222.32	384.33	391.19	759.29	289.06	246.99
48	E17a_E18a	KnownJunction	0	624.42	305.96	485.88	480.11	918.70	416.98	295.66
49	ER18a	ExonRegion	0	643.28	372.83	493.71	537.60	827.82	472.66	302.55
50	E18a_E19a	KnownJunction	0	656.95	409.26	473.27	553.04	932.19	477.65	263.61
51	ER19a	ExonRegion	0	736.14	405.56	578.56	571.48	928.42	509.50	338.58
52	E19a_E20a	KnownJunction	0	563.02	326.08	430.49	439.96	694.33	387.98	241.27
53	ER20a	ExonRegion	0	534.21	323.81	452.06	430.95	635.94	395.99	255.54
54	E20a_E21a	KnownJunction	0	453.77	301.65	434.03	378.54	592.57	378.12	251.72
55	ER21a	ExonRegion	0	265.66	234.04	265.77	347.82	429.75	288.34	172.29
56	E21a_E22a	KnownJunction	0	237.55	220.57	236.74	355.90	293.44	248.51	190.71
57	ER22a	ExonRegion	0	147.91	224.01	158.42	309.46	269.64	251.31	144.65
58	E22a_E23a	KnownJunction	0	91.94	222.12	103.75	296.38	105.24	217.91	113.59
59	ER23a	ExonRegion	0	129.36	272.86	137.24	386.87	255.29	275.41	161.59
60	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	E23a_E25b	KnownJunction	0	118.92	224.07	121.87	310.19	246.04	273.01	147.01
62	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
63	ER24a	ExonRegion	0	0.10	1.13	0.41	1.08	0.11	0.49	0.04
64	I24_AR1	ActiveIntronRegion	1	52.03	56.88	32.92	21.86	19.59	17.35	12.30
65	I24_SR2	SilentIntronRegion	1	34.37	63.43	29.39	25.30	24.57	13.13	14.35
66	ER25a	ExonRegion	0	31.89	68.94	32.35	84.48	75.72	76.62	38.62
67	ER25b	ExonRegion	0	139.48	242.11	139.15	329.63	277.64	270.35	171.11
68	E25a_E26a	KnownJunction	0	93.08	123.03	95.06	216.19	240.37	180.74	124.58
69	E26_Aa	NovelBoundary	0	23.30	62.53	21.28	49.79	23.38	47.44	16.52
70	ER26a	ExonRegion	0	226.23	157.83	197.97	218.80	328.44	248.26	126.58