Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NAV2	Gene	0	106.24	152.06	403.83	426.28	201.67	114.47	65.46
2	396087	Transcript	0	11.80	11.36	42.64	29.43	17.78	6.56	6.04
3	360655	Transcript	0	0	0	0	0	0	0	0
4	349880	Transcript	0	0	0	0	0	0	0	0
5	396085	Transcript	0	0	0	0	0	0	0	0
6	311043	Transcript	1	14.04	30.50	65.00	143.79	10.24	16.44	12.98
7	IG24_AR6	ActiveIntergenicRegion	0	2.47	9.28	27.55	71.35	2.51	38.19	0.91
8	IG24_SR5	SilentIntergenicRegion	0	0.47	1.61	0.84	21.68	0.00	11.59	0.00
9	IG24_AR7	ActiveIntergenicRegion	0	5.40	22.29	46.82	195.77	1.89	61.53	4.48
10	ER1a	ExonRegion	1	12.18	26.08	91.76	210.18	1.89	77.12	5.23
11	E1_Da	NovelBoundary	1	3.89	12.35	26.71	97.66	0.00	49.82	1.45
12	E1a_E2a	KnownJunction	1	13.27	22.59	150.79	257.20	1.01	72.47	4.89
13	I1_AR1	ActiveIntronRegion	1	3.78	11.72	28.04	112.17	0.99	62.69	1.80
14	ER2a	ExonRegion	1	57.54	63.76	292.53	337.98	65.45	80.19	18.03
15	E2a_E3a	KnownJunction	1	98.37	67.10	383.40	356.22	94.40	101.12	27.72
16	ER3a	ExonRegion	1	111.05	95.49	507.99	486.97	90.03	138.77	30.09
17	E3a_E4a	KnownJunction	1	101.26	99.86	514.64	566.56	101.52	148.87	26.61
18	ER4a	ExonRegion	1	93.99	103.63	480.98	530.86	70.50	129.64	26.65
19	E4a_E5a	KnownJunction	1	90.83	97.05	407.00	433.11	61.07	124.11	25.55
20	ER5a	ExonRegion	0	49.41	77.61	218.72	390.56	56.41	92.65	22.63
21	E5a_E6a	KnownJunction	1	1.92	0.00	12.33	17.01	0.00	7.91	3.77
22	E5a_E7a	KnownJunction	0	41.01	80.65	159.61	361.29	75.15	53.30	18.40
23	E5a_E8a	NovelJunction	0	0.97	2.65	7.60	14.17	1.18	4.26	0.00
24	ER6a	ExonRegion	0	0.59	0.02	10.64	19.14	0.07	12.95	4.00
25	E6a_E7a	KnownJunction	1	0.00	0.00	6.83	14.66	0.00	6.22	3.15
26	ER7a	ExonRegion	0	45.76	89.30	229.63	434.46	70.55	91.36	26.10
27	E7a_E8a	KnownJunction	1	36.95	62.00	182.40	368.06	56.00	62.01	14.73
28	ER8a	ExonRegion	1	55.42	120.43	252.70	354.61	71.58	88.63	17.62
29	E8a_E9a	KnownJunction	1	105.61	123.37	289.17	427.39	146.55	95.81	17.37
30	ER9a	ExonRegion	1	104.54	171.43	345.52	478.43	138.82	113.53	26.58
31	E9a_E10a	KnownJunction	1	84.47	190.05	353.97	531.55	132.46	133.62	24.45
32	ER10a	ExonRegion	1	164.72	271.33	498.39	619.68	166.02	148.74	32.89
33	E10a_E11a	KnownJunction	1	150.19	275.40	518.51	629.27	179.01	152.97	34.21
34	ER11a	ExonRegion	0	74.08	193.69	289.47	441.19	114.12	102.02	26.67
35	E11a_E12a	KnownJunction	0	63.37	199.82	340.61	454.21	115.06	129.39	35.47
36	ER12a	ExonRegion	0	56.87	178.95	279.14	405.07	96.91	91.45	33.52
37	E12a_E14a	KnownJunction	0	54.03	171.18	271.58	334.17	102.59	72.68	38.54
38	E12a_E15a	NovelJunction	1	1.03	2.65	2.00	25.03	0.00	2.25	0.00
39	I12_AR1	ActiveIntronRegion	1	4.30	21.18	5.86	3.74	9.61	1.37	23.39
40	ER13a	ExonRegion	0	0.89	7.34	0.00	3.12	5.61	0.80	5.47
41	ER14a	ExonRegion	0	72.41	225.13	350.10	425.03	140.85	89.67	75.32
42	E14a_E15a	KnownJunction	1	65.54	216.21	294.48	358.20	132.32	73.99	63.79
43	ER15a	ExonRegion	0	87.39	227.86	371.37	444.76	137.11	93.31	63.36
44	E15a_E16a	KnownJunction	0	94.43	231.21	425.62	394.93	126.15	111.73	57.97
45	ER16a	ExonRegion	0	99.71	231.87	446.02	455.64	171.40	108.94	75.69
46	E16a_E17a	KnownJunction	0	190.43	343.89	702.18	585.01	287.58	149.54	134.83
47	ER17a	ExonRegion	0	154.02	266.44	584.41	612.30	261.99	136.54	123.75
48	E17a_E18a	KnownJunction	1	26.64	12.08	281.67	118.82	3.37	53.17	36.47
49	E17a_E19a	KnownJunction	1	27.19	53.67	130.01	284.46	14.87	32.08	20.49
50	E17a_E20a	NovelJunction	1	62.79	245.24	145.14	264.92	226.89	55.82	48.44
51	ER18a	ExonRegion	1	25.45	11.47	286.63	109.13	3.63	58.70	37.94
52	E18a_E19a	KnownJunction	1	21.01	12.14	231.69	88.43	0.97	59.66	32.85
53	ER19a	ExonRegion	1	55.04	61.44	453.50	407.17	18.10	94.57	66.08
54	E19_Da	NovelBoundary	1	20.78	1.39	142.45	5.77	3.18	0.00	2.57
55	E19a_E20a	KnownJunction	1	43.91	45.45	374.16	316.45	22.13	77.64	58.66
56	ER20a	ExonRegion	0	117.80	232.15	568.60	577.27	237.18	125.97	119.62
57	E20a_E21a	KnownJunction	0	139.26	227.75	648.53	574.58	324.58	117.97	130.57
58	ER21a	ExonRegion	0	104.37	192.20	479.19	475.22	202.79	91.09	102.19
59	E21a_E22a	KnownJunction	0	25.90	37.94	99.37	64.56	7.75	13.72	7.61
60	E21a_E23a	KnownJunction	0	73.79	128.86	349.69	291.23	162.20	60.86	85.82
61	ER22a	ExonRegion	1	25.81	31.11	108.46	71.45	11.67	15.33	4.91
62	E22a_E23a	KnownJunction	1	11.10	36.02	70.36	72.93	1.91	17.88	3.83
63	ER23a	ExonRegion	0	88.01	173.15	463.75	370.51	168.98	79.04	88.17
64	E23a_E24a	KnownJunction	0	62.34	104.30	306.89	237.07	124.81	48.00	53.30
65	E24a_E25a	KnownJunction	0	72.48	151.11	354.20	349.83	113.44	75.23	66.88
66	ER24a	ExonRegion	0	88.40	179.24	438.58	415.71	143.95	85.87	84.94
67	ER25a	ExonRegion	0	99.01	177.60	454.22	391.73	219.02	86.88	81.23
68	E25a_E26a	KnownJunction	0	117.26	138.32	466.65	329.75	180.13	57.41	70.38
69	ER26a	ExonRegion	0	92.13	203.65	438.44	400.72	174.20	84.05	88.22
70	E26a_E27a	KnownJunction	0	83.78	219.73	398.60	422.73	149.94	97.39	76.62
71	ER27a	ExonRegion	0	110.11	203.69	449.87	440.83	191.87	91.58	90.75
72	E27a_E28a	KnownJunction	0	122.12	191.81	477.27	404.36	310.48	79.09	104.05
73	ER28a	ExonRegion	0	151.47	186.22	535.12	433.07	309.30	98.26	95.51
74	E28a_E29a	KnownJunction	1	29.51	39.91	154.64	192.92	21.92	31.70	4.10
75	E28a_E30a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
76	E28a_E30b	KnownJunction	0	115.44	99.94	307.81	83.22	308.03	38.22	104.92
77	I28	Intron	1	25.26	9.32	110.95	12.03	4.67	3.63	0.77
78	I28_AR1	ActiveIntronRegion	1	16.14	15.04	83.31	11.64	3.88	2.47	0.47
79	I28_SR1	SilentIntronRegion	1	26.42	8.62	114.48	12.09	4.77	3.77	0.81
80	E29a_E30b	KnownJunction	1	40.46	65.73	230.85	284.62	14.18	58.77	3.65
81	ER29a	ExonRegion	1	63.69	103.26	366.01	457.77	29.51	75.74	7.57
82	I29	Intron	1	35.61	13.67	122.71	17.89	5.30	3.03	1.94
83	I29_SR1	SilentIntronRegion	1	35.92	13.79	123.83	18.06	5.35	3.06	1.96
84	ER30a	ExonRegion	0	23.59	22.72	85.28	58.86	35.55	13.12	12.08
85	ER30b	ExonRegion	0	229.81	222.69	833.98	551.48	359.84	138.87	131.36
86	E30a_E31a	KnownJunction	0	163.03	149.51	608.24	380.44	259.69	82.73	99.06
87	I30_AR3	ActiveIntronRegion	1	23.94	7.73	59.86	11.04	9.28	4.04	0.89
88	I30_SR3	SilentIntronRegion	1	22.18	10.70	62.44	8.56	6.65	2.45	0.95
89	ER31a	ExonRegion	0	116.82	162.03	529.78	425.20	245.41	99.76	97.33
90	E31a_E32a	KnownJunction	0	92.71	155.40	484.61	426.03	202.98	92.38	95.26
91	E31a_E33a	NovelJunction	1	0.85	0.00	4.07	9.64	1.18	8.92	0.00
92	E32_Aa	NovelBoundary	1	44.23	2.78	210.71	1.68	0.00	1.66	0.00
93	ER32a	ExonRegion	0	86.25	159.21	423.95	442.15	191.73	105.68	96.12
94	E32a_E33a	KnownJunction	0	96.82	183.03	500.96	492.57	280.78	130.62	106.47
95	ER33a	ExonRegion	0	135.73	207.88	566.01	542.85	332.74	136.46	113.30
96	E33a_E34a	KnownJunction	0	188.33	208.88	682.76	567.61	461.13	149.25	136.29
97	E33a_E35a	NovelJunction	1	3.84	1.34	8.22	14.49	1.15	1.18	0.00
98	ER34a	ExonRegion	0	144.60	235.87	670.42	637.03	332.21	155.17	142.07
99	E34a_E35a	KnownJunction	0	152.30	264.03	732.97	679.12	403.24	134.78	135.42
100	ER35a	ExonRegion	0	200.02	262.33	824.98	693.40	378.54	150.20	135.57
101	E35a_E36a	KnownJunction	0	114.24	241.41	598.87	568.34	270.92	110.68	92.51
102	ER36a	ExonRegion	0	135.60	234.59	634.73	596.16	353.17	145.28	123.16
103	E36a_E37a	KnownJunction	0	144.28	290.33	635.74	702.17	340.84	224.29	147.53
104	ER37a	ExonRegion	0	157.47	275.91	680.41	724.14	359.93	194.17	154.11
105	E37a_E38a	KnownJunction	0	175.46	263.90	734.17	745.41	418.52	254.14	133.00
106	ER38a	ExonRegion	0	154.08	274.19	751.19	734.39	427.71	220.25	155.01
107	E38a_E39a	KnownJunction	0	124.41	239.65	707.58	695.13	386.80	201.03	150.97
108	ER39a	ExonRegion	0	145.10	230.08	631.68	605.11	290.25	192.16	120.09
109	E39a_E40a	KnownJunction	0	88.81	219.45	399.24	545.70	226.26	148.98	67.69
110	ER40a	ExonRegion	0	122.84	212.69	441.93	580.62	216.61	170.48	98.22
111	E40a_E41a	KnownJunction	0	106.42	241.22	365.12	604.00	187.81	191.91	94.90
112	ER41a	ExonRegion	0	110.41	247.78	393.40	725.62	216.22	217.52	100.84
113	E41a_E42a	KnownJunction	0	122.82	281.58	466.52	913.81	176.33	263.12	139.24
114	ER42a	ExonRegion	0	135.45	108.46	409.65	376.11	287.28	122.46	64.34