Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ARNTL	Gene	0	52.27	112.74	204.43	320.49	33.40	385.50	73.15
2	396441	Transcript	0	6.42	4.36	7.83	4.79	1.18	8.98	2.78
3	389708	Transcript	0	4.57	14.61	11.21	24.30	0.57	31.12	1.98
4	256172	Transcript	0	0	0	0	0	0	0	0
5	361003	Transcript	0	0.00	0.00	1.32	0.00	0.00	2.81	0.00
6	389707	Transcript	0	0	0	0	0	0	0	0
7	401424	Transcript	0	0.00	0.00	0.00	0.00	0.97	0.00	0.00
8	403290	Transcript	0	0	0	0	0	0	0	0
9	403510	Transcript	0	0	0	0	0	0	0	0
10	339640	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	403482	Transcript	0	5.45	4.14	6.85	7.38	0.66	10.59	1.34
12	IG9_AR1	ActiveIntergenicRegion	0	1.01	1.25	4.97	11.19	0.61	5.09	0.44
13	ER1a	ExonRegion	0	1.57	0.00	0.74	0.00	0.81	0.00	0.67
14	ER1b	ExonRegion	0	8.59	6.63	14.55	17.46	4.12	8.92	6.85
15	E1_Ac	KnownBoundary	0	3.96	3.21	7.24	1.68	2.35	0.00	2.19
16	E1_Ad	KnownBoundary	0	18.29	17.50	37.29	56.02	10.65	45.00	17.20
17	ER1c	ExonRegion	0	19.56	17.67	33.68	46.70	10.97	39.01	17.66
18	ER1d	ExonRegion	0	14.80	24.97	30.21	54.20	5.97	75.86	17.53
19	E1a_E2a	KnownJunction	0	6.03	19.60	22.78	38.55	3.07	51.56	6.51
20	ER2a	ExonRegion	0	10.81	31.92	36.55	82.16	5.76	107.03	16.60
21	E2a_E3a	KnownJunction	0	4.84	9.62	14.36	24.14	1.15	35.78	8.01
22	E2a_E4a	KnownJunction	0	13.07	34.15	50.83	105.82	2.21	158.76	19.91
23	E2a_E5a	NovelJunction	0	2.90	8.59	4.74	15.04	0.00	10.29	0.89
24	ER3a	ExonRegion	0	11.51	15.48	24.50	42.40	2.62	48.15	17.85
25	E3a_E4a	KnownJunction	0	13.59	20.54	31.14	50.42	0.88	63.68	23.45
26	ER4a	ExonRegion	0	27.79	103.83	131.12	259.29	20.80	360.38	49.43
27	E4a_E5a	KnownJunction	0	33.15	121.95	129.69	341.67	21.42	483.01	60.69
28	E4a_E8a	NovelJunction	0	0.00	1.18	0.72	3.79	0.00	13.35	0.00
29	ER5a	ExonRegion	0	37.93	143.65	180.75	391.66	26.88	503.50	64.41
30	E5a_E6a	KnownJunction	1	3.47	3.91	16.96	14.85	8.53	14.93	17.44
31	E5a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.97	0.00	0.00
32	E5a_E8a	KnownJunction	0	34.85	114.62	164.71	287.95	23.95	387.18	43.25
33	E5a_E9b	NovelJunction	0	0.00	2.47	1.45	4.09	0.00	13.45	0.00
34	ER6a	ExonRegion	1	3.46	3.64	15.92	15.74	9.62	14.10	21.17
35	ER6b	ExonRegion	1	5.22	2.60	22.48	19.36	8.15	18.29	27.75
36	E6a_E8a	KnownJunction	1	6.64	1.63	23.87	17.64	7.79	17.61	23.86
37	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E8_Aa	NovelBoundary	1	14.82	17.73	11.90	3.36	0.00	4.26	1.35
39	ER8a	ExonRegion	0	59.48	139.62	239.03	392.09	37.11	505.61	73.62
40	E8a_E9b	KnownJunction	0	48.92	95.00	160.55	289.85	38.45	357.16	44.10
41	ER9a	ExonRegion	0	5.45	4.14	6.85	7.38	0.66	10.59	1.34
42	E9_Ab	KnownBoundary	0	2.47	8.72	5.95	6.53	1.06	16.62	0.73
43	ER9b	ExonRegion	0	74.33	163.59	321.26	434.00	51.08	606.69	88.45
44	E9a_E10a	KnownJunction	0	73.10	139.58	327.00	373.69	60.68	545.94	86.23
45	E9a_E11a	NovelJunction	1	0.00	1.44	3.26	7.07	0.00	24.98	0.00
46	ER10a	ExonRegion	0	154.47	200.61	517.48	601.40	68.96	754.69	126.56
47	E10a_E11a	KnownJunction	0	134.94	220.97	523.53	627.38	77.30	700.92	116.50
48	ER11a	ExonRegion	0	149.98	223.79	538.58	637.81	86.08	640.91	136.96
49	E11a_E12a	KnownJunction	0	143.77	192.60	425.89	555.75	63.44	563.01	130.13
50	E11a_E13a	NovelJunction	0	3.81	14.19	12.55	48.03	0.00	32.64	0.00
51	ER12a	ExonRegion	0	95.79	181.65	361.88	474.23	59.09	487.93	117.88
52	E12a_E13a	KnownJunction	0	39.40	138.50	239.96	425.66	54.82	460.29	90.47
53	E13_Aa	NovelBoundary	1	12.90	5.57	90.56	1.03	0.00	2.09	4.01
54	ER13a	ExonRegion	0	48.89	159.08	279.16	406.84	47.29	473.28	103.38
55	E13a_E14a	KnownJunction	0	42.44	120.93	256.83	330.29	47.28	451.60	105.82
56	ER14a	ExonRegion	0	37.09	125.96	216.98	360.71	35.40	412.24	92.17
57	E14a_E15a	KnownJunction	0	36.73	68.20	150.99	238.51	25.15	321.44	56.29
58	E14a_E15b	KnownJunction	0	26.62	37.62	110.44	134.53	9.36	152.52	28.36
59	E14a_E17a	KnownJunction	0	0.00	0.00	1.32	0.00	0.00	2.81	0.00
60	E15_Ab	NovelBoundary	1	20.01	7.70	65.95	3.01	0.00	1.47	4.04
61	ER15a	ExonRegion	0	43.80	77.75	183.40	266.23	26.52	349.41	64.25
62	ER15b	ExonRegion	0	67.75	167.14	292.26	476.96	47.17	521.51	118.76
63	E15a_E16a	KnownJunction	0	78.48	180.88	365.05	439.28	56.04	550.44	112.00
64	ER16a	ExonRegion	0	96.15	155.16	377.85	447.30	70.09	508.58	125.46
65	E16_Da	NovelBoundary	0	15.87	27.95	28.81	15.90	2.07	23.69	7.04
66	E16a_E17a	KnownJunction	0	119.55	118.98	445.54	405.77	65.10	457.10	113.07
67	ER17a	ExonRegion	0	84.73	140.84	333.45	404.04	34.59	483.77	101.14
68	E17a_E18a	KnownJunction	0	0.77	9.17	8.03	21.94	0.00	25.33	0.00
69	E17a_E18b	KnownJunction	0	92.90	120.80	328.94	300.66	34.86	413.47	92.32
70	ER18a	ExonRegion	0	8.37	20.06	14.39	26.65	1.15	36.91	3.96
71	E18_Ab	KnownBoundary	0	6.91	17.42	13.48	23.35	3.30	30.95	6.78
72	ER18b	ExonRegion	0	72.33	101.55	248.33	326.11	51.65	368.79	88.75
73	E18_Da	NovelBoundary	0	4.66	31.42	11.41	20.91	0.00	21.47	0.77
74	E18a_E19a	KnownJunction	0	49.30	87.14	155.19	287.19	25.06	325.62	74.29
75	E18a_E20a	NovelJunction	0	0.78	5.49	4.64	24.08	0.00	17.07	0.00
76	E19_Aa	NovelBoundary	0	17.61	19.20	32.84	61.61	0.00	104.68	6.11
77	ER19a	ExonRegion	0	78.09	133.87	241.71	396.98	49.45	481.20	87.91
78	E19_Da	KnownBoundary	0	11.57	10.88	12.62	2.71	0.00	7.50	5.06
79	E19a_E20a	KnownJunction	0	122.10	163.04	427.47	530.23	57.72	633.31	143.77
80	ER19b	ExonRegion	0	6.42	4.36	7.83	4.79	1.18	8.98	2.78
81	I19_SR2	SilentIntronRegion	0	15.14	21.66	26.77	23.54	2.27	20.43	10.36
82	E20_Aa	NovelBoundary	1	63.29	31.45	185.55	31.99	1.06	22.67	8.57
83	ER20a	ExonRegion	0	67.17	163.35	228.57	455.00	39.12	550.59	96.08
84	E20a_E21a	KnownJunction	0	41.94	122.03	122.74	299.87	20.61	291.61	49.46
85	ER21a	ExonRegion	0	65.82	140.05	254.47	433.72	45.80	461.75	103.64
86	E21a_E22a	KnownJunction	0	61.95	131.72	264.67	427.23	88.06	532.91	114.26
87	ER22a	ExonRegion	0	39.98	117.55	165.72	347.20	30.65	453.97	72.17
88	ER22b	ExonRegion	0	1.54	3.64	14.56	9.35	2.43	33.71	3.71
89	ER22c	ExonRegion	0	1.02	2.02	10.16	3.74	1.89	17.16	2.47
90	IG10	Intergenic	0	4.77	5.27	15.33	5.92	1.46	9.10	8.42
91	IG10_SR1	SilentIntergenicRegion	0	6.67	4.91	7.11	2.97	1.34	8.66	2.84
92	IG10_AR2	ActiveIntergenicRegion	0	5.08	5.68	17.61	6.60	1.66	9.65	9.86
93	IG10_SR2	SilentIntergenicRegion	0	2.36	4.43	5.63	4.36	0.00	8.70	1.51