Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RIC3	Gene	0	19.08	13.08	34.21	39.10	30.05	3.24	8.24
2	343202	Transcript	0	14.39	9.75	43.07	35.22	31.51	1.58	8.28
3	309737	Transcript	0	3.12	1.52	9.16	8.98	7.20	0.15	2.46
4	335425	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	396677	Transcript	0	4.55	4.93	6.13	1.98	3.58	0.51	1.54
6	ER1a	ExonRegion	0	12.27	18.80	19.36	41.58	15.50	2.72	5.89
7	E1a_E2a	KnownJunction	0	2.05	19.81	5.79	25.68	1.01	2.33	1.39
8	E1a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER2a	ExonRegion	0	21.56	16.70	44.68	52.18	20.87	4.00	9.18
10	E2_Da	NovelBoundary	0	22.82	8.49	54.41	26.03	9.73	2.09	7.57
11	E2a_E3a	KnownJunction	0	7.91	9.51	22.39	10.08	6.96	1.66	5.76
12	I2	Intron	0	15.18	10.77	37.29	22.03	15.83	1.19	6.75
13	I2_AR1	ActiveIntronRegion	0	18.96	14.16	47.65	28.21	16.54	1.57	8.54
14	E3_Aa	NovelBoundary	0	47.75	24.38	113.50	80.00	24.51	7.24	15.98
15	ER3a	ExonRegion	0	36.01	24.12	58.90	55.33	30.86	5.31	13.70
16	E3a_E4a	KnownJunction	0	50.02	25.64	90.58	89.94	38.66	5.25	26.15
17	E3a_E6b	NovelJunction	0	0.00	3.26	0.00	10.08	0.00	0.00	0.00
18	ER4a	ExonRegion	0	43.57	15.68	95.48	69.88	37.95	4.47	20.84
19	E4_Da	NovelBoundary	0	6.38	1.50	10.22	6.53	21.74	0.00	0.73
20	E4a_E6a	KnownJunction	0	0.85	0.00	2.24	4.25	2.26	0.00	0.53
21	E4a_E6b	KnownJunction	0	14.39	9.75	43.07	35.22	31.51	1.58	8.28
22	I4	Intron	0	2.11	1.29	4.96	2.74	7.80	0.62	2.30
23	I4_AR1	ActiveIntronRegion	0	5.47	1.38	12.04	6.03	10.05	0.47	4.85
24	I4_SR1	SilentIntronRegion	1	3.31	2.47	15.80	5.77	12.03	0.72	4.87
25	I4_AR2	ActiveIntronRegion	0	2.63	2.22	10.04	5.33	10.76	0.12	3.42
26	I4_SR2	SilentIntronRegion	0	7.22	2.53	14.14	4.24	10.30	0.10	1.48
27	I4_AR3	ActiveIntronRegion	0	10.54	5.33	17.33	12.41	16.20	0.75	6.31
28	I4_AR5	ActiveIntronRegion	0	1.55	0.65	2.58	0.55	7.74	0.00	2.34
29	I4_AR6	ActiveIntronRegion	0	1.59	1.52	4.38	2.20	8.73	0.36	1.78
30	I4_AR7	ActiveIntronRegion	0	5.59	2.30	10.40	1.74	11.77	1.35	1.15
31	E5_Aa	NovelBoundary	0	4.59	5.04	8.39	6.99	23.05	1.66	2.14
32	ER5a	ExonRegion	0	1.42	2.14	2.71	0.69	2.92	0.00	0.92
33	E5a_E6b	KnownJunction	0	7.68	7.72	9.54	3.28	4.24	1.02	2.16
34	I5_AR1	ActiveIntronRegion	0	2.25	1.93	4.98	4.05	9.16	0.66	2.38
35	ER6a	ExonRegion	0	5.38	3.04	16.09	13.72	12.15	0.31	4.38
36	ER6b	ExonRegion	0	36.79	17.32	73.48	57.91	47.84	0.43	12.39
37	E6a_E7a	KnownJunction	0	35.72	25.51	86.14	68.59	41.13	0.00	13.11
38	ER7a	ExonRegion	0	16.84	11.71	28.70	35.15	31.03	3.32	7.44
39	IG16	Intergenic	0	1.36	1.51	2.95	4.42	8.69	1.72	1.74
40	IG16_AR2	ActiveIntergenicRegion	0	0.84	1.04	2.43	3.42	7.63	1.52	1.54
41	IG16_AR1	ActiveIntergenicRegion	0	2.87	2.88	4.51	7.30	13.13	2.95	2.79