Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AL731543.9	Gene	0	1.53	0.85	0.98	0.57	1.52	0.66	0.88
2	388832	Transcript	0	0.39	0.21	0.25	0.14	0.41	0.16	0.22
3	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.01	0.00	0.00
6	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E3_Aa	NovelBoundary	0	37.95	15.95	28.90	9.35	25.70	13.11	23.62
8	ER3a	ExonRegion	0	0.77	0.00	0.35	0.00	2.91	0.00	0.00
9	E3_Da	NovelBoundary	0	460.91	262.58	296.70	228.81	223.77	170.15	179.30
10	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER16a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER17a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER18a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER19a	ExonRegion	0	0.00	0.00	0.00	0.00	0.27	0.00	0.00
42	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER20a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	ER21a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	ER22a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	ER23a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER24a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER25a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER26a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	E26a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	ER27a	ExonRegion	0	0.01	0.00	0.00	0.01	0.00	0.00	0.00
58	E27a_E28a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	ER28a	ExonRegion	0	20.41	11.52	13.19	7.78	19.39	8.92	11.90