Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TUBGCP2	Gene	0	76.58	79.07	100.98	62.85	109.74	35.22	172.34
2	368563	Transcript	0	77.94	27.11	75.45	18.88	126.55	7.07	56.78
3	252936	Transcript	0	36.50	12.15	34.89	9.04	54.60	4.60	28.67
4	368562	Transcript	0	3.18	2.42	2.57	0.74	5.80	0.41	1.45
5	ER1a	ExonRegion	0	12.56	8.87	10.07	5.25	16.15	0.90	12.77
6	E1a_E2b	KnownJunction	0	143.33	45.34	140.83	32.51	236.96	13.24	100.79
7	ER2a	ExonRegion	0	71.46	24.30	69.77	16.83	108.12	9.19	56.67
8	ER2b	ExonRegion	0	156.65	84.38	174.93	58.63	113.69	35.99	159.20
9	E2a_E3a	KnownJunction	0	355.56	124.37	393.14	85.42	191.45	69.06	265.83
10	E3_Aa	NovelBoundary	0	27.24	8.62	19.06	0.00	7.65	0.00	10.55
11	ER3a	ExonRegion	0	253.63	123.73	304.48	105.60	199.88	72.31	261.89
12	E3a_E4a	KnownJunction	0	182.19	111.21	248.66	86.39	126.24	47.49	228.94
13	ER4a	ExonRegion	0	115.49	98.72	150.33	72.40	105.58	38.94	172.35
14	E4a_E5a	KnownJunction	0	68.50	127.68	108.18	84.09	78.49	52.55	162.07
15	ER5a	ExonRegion	0	96.19	124.05	144.66	85.94	140.35	47.09	246.23
16	E5_Da	NovelBoundary	1	13.45	39.14	21.30	12.35	8.60	4.56	5.83
17	E5a_E6a	KnownJunction	0	58.06	71.51	90.38	51.23	79.97	26.85	204.12
18	I5	Intron	0	17.06	21.80	12.79	10.44	6.82	5.37	5.94
19	I5_SR1	SilentIntronRegion	0	20.34	17.26	15.95	8.85	8.02	3.89	6.32
20	I5_AR2	ActiveIntronRegion	1	9.29	24.61	11.56	16.67	5.56	3.14	7.50
21	I5_AR3	ActiveIntronRegion	0	9.09	21.36	14.60	16.62	6.92	7.16	7.74
22	I5_AR4	ActiveIntronRegion	1	18.44	32.80	8.81	19.54	9.85	3.68	9.44
23	I5_AR5	ActiveIntronRegion	1	17.16	29.80	6.01	22.86	5.78	4.05	8.81
24	I5_AR6	ActiveIntronRegion	0	17.09	35.09	16.74	16.44	9.22	11.37	8.04
25	I5_SR4	SilentIntronRegion	0	27.19	22.45	13.29	7.24	5.80	3.99	5.57
26	I5_AR9	ActiveIntronRegion	0	15.44	25.89	9.00	12.56	5.00	4.61	5.67
27	E6_Aa	NovelBoundary	1	4.81	23.07	5.35	8.67	2.24	2.84	3.18
28	ER6a	ExonRegion	0	69.83	99.80	106.57	82.88	116.28	35.11	215.73
29	E6a_E7a	KnownJunction	0	67.96	96.99	98.08	91.60	98.46	26.50	206.19
30	E7_Aa	NovelBoundary	1	23.40	2.31	27.86	4.25	2.12	3.00	7.60
31	ER7a	ExonRegion	0	75.31	123.25	104.15	102.41	121.32	47.91	226.26
32	E7a_E8a	KnownJunction	0	82.62	133.30	104.40	105.06	118.08	54.35	224.97
33	ER8a	ExonRegion	0	107.02	148.61	142.57	126.89	194.26	62.65	304.27
34	E8a_E9b	KnownJunction	0	114.86	147.15	166.15	146.43	207.20	68.50	347.19
35	ER9a	ExonRegion	0	3.18	2.42	2.57	0.74	5.80	0.41	1.45
36	E9_Ab	KnownBoundary	0	0.00	3.10	0.00	0.00	2.10	0.00	0.00
37	ER9b	ExonRegion	0	158.94	168.10	206.83	159.15	282.07	74.57	444.99
38	E9a_E10a	KnownJunction	0	173.26	162.09	239.77	143.31	280.32	75.44	430.86
39	ER10a	ExonRegion	0	180.34	162.76	231.85	161.49	313.93	70.69	486.66
40	E10a_E11a	KnownJunction	0	172.06	146.44	172.06	139.17	267.46	64.37	466.07
41	ER11a	ExonRegion	0	123.54	137.76	154.92	106.77	215.66	63.60	367.78
42	E11a_E12a	KnownJunction	0	121.89	148.49	161.80	101.27	350.50	63.92	431.53
43	E12_Aa	NovelBoundary	1	46.31	1.42	52.22	0.00	2.35	0.00	6.88
44	ER12a	ExonRegion	0	106.23	129.41	148.68	97.37	201.70	43.72	304.38
45	E12_Da	NovelBoundary	1	7.03	35.26	6.25	11.70	8.69	11.28	8.74
46	E12a_E13a	KnownJunction	0	102.08	98.12	184.36	105.06	308.40	38.16	321.38
47	I12	Intron	0	9.30	23.50	4.86	9.00	5.58	8.03	5.24
48	I12_AR1	ActiveIntronRegion	0	9.37	23.68	4.90	9.07	5.63	8.09	5.28
49	E13_Aa	NovelBoundary	1	17.11	45.92	6.64	23.98	8.67	5.87	15.71
50	ER13a	ExonRegion	0	105.82	130.86	165.49	106.90	200.52	65.35	308.35
51	E13_Da	NovelBoundary	1	21.05	11.95	10.43	10.02	7.49	4.23	3.81
52	E13a_E14a	KnownJunction	0	103.33	122.53	173.62	96.12	158.05	52.63	261.66
53	E14_Aa	NovelBoundary	0	10.61	23.59	10.61	8.24	3.11	7.05	0.60
54	ER14a	ExonRegion	0	170.66	147.91	251.21	121.44	237.15	78.85	366.15
55	E14a_E15a	KnownJunction	0	148.37	113.78	204.19	111.72	193.16	83.80	302.26
56	ER15a	ExonRegion	0	102.57	111.16	155.68	90.98	172.48	68.84	238.27
57	E15a_E16a	KnownJunction	0	108.82	100.17	143.10	71.76	156.74	54.43	237.07
58	E15a_E17a	NovelJunction	0	4.19	8.91	7.53	4.17	2.19	9.86	2.16
59	ER16a	ExonRegion	0	80.55	79.53	85.61	54.45	88.14	41.88	147.59
60	E16a_E17a	KnownJunction	0	53.54	70.51	70.18	52.34	52.03	39.45	141.15
61	I16_SR2	SilentIntronRegion	0	31.09	16.40	20.66	16.30	8.39	10.73	5.08
62	ER17a	ExonRegion	0	63.18	95.07	85.13	59.01	78.09	54.59	147.18
63	E17a_E18a	KnownJunction	0	38.67	81.65	57.47	40.26	70.82	34.04	107.17
64	I17_AR4	ActiveIntronRegion	0	18.37	5.73	8.98	1.01	4.83	1.15	3.35
65	ER18a	ExonRegion	0	22.17	46.18	33.23	24.39	32.94	21.78	61.28
66	ER18b	ExonRegion	0	3.07	2.43	0.77	2.85	4.16	0.00	3.47
67	ER18c	ExonRegion	0	1.54	0.00	0.00	1.25	1.08	0.00	0.67