Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	POLL	Gene	0	20.41	18.57	13.11	6.56	39.63	8.81	40.10
2	370174	Transcript	0	2.82	4.36	2.19	0.56	6.18	0.75	7.67
3	370172	Transcript	0	0.00	1.18	0.89	0.00	4.43	4.18	7.29
4	370157	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	370158	Transcript	0	0	0	0	0	0	0	0
6	370164	Transcript	0	0.00	2.52	1.74	0.00	2.17	1.63	2.42
7	299206	Transcript	0	0	0	0	0	0	0	0
8	339310	Transcript	0	8.56	7.33	10.88	4.28	33.62	4.48	15.73
9	370169	Transcript	0	0	0	0	0	0	0	0
10	370162	Transcript	0	2.27	3.18	0.73	1.27	0.00	0.00	0.57
11	370168	Transcript	0	4.76	5.35	2.20	1.60	8.67	1.58	5.92
12	ER1a	ExonRegion	0	0.00	0.24	0.68	0.00	0.00	0.00	0.07
13	ER1b	ExonRegion	0	1.34	4.67	2.14	1.01	2.86	0.73	7.40
14	E1a_E1f	KnownJunction	0	8.46	12.85	5.91	1.68	18.53	2.25	22.94
15	E1a_E2a	KnownJunction	0	0.00	1.18	0.89	0.00	4.43	4.18	7.29
16	ER1c	ExonRegion	0	6.98	14.27	6.15	1.25	20.04	4.50	27.71
17	ER1d	ExonRegion	0	2.08	6.29	1.68	0.00	7.60	1.32	4.13
18	E1_Ad	KnownBoundary	0	0.65	6.94	2.85	1.63	16.46	5.47	3.05
19	ER1e	ExonRegion	0	3.89	9.24	3.53	1.02	14.22	5.68	8.03
20	E1_Db	KnownBoundary	1	5.37	17.94	11.01	2.68	52.95	2.49	17.93
21	E1b_E1f	KnownJunction	0	0.95	5.36	1.78	1.08	7.75	1.50	4.40
22	ER1f	ExonRegion	0	8.56	7.33	10.88	4.28	33.62	4.48	15.73
23	E1_Ae	KnownBoundary	0	11.30	5.83	8.81	0.00	36.52	4.07	7.25
24	E1_Af	KnownBoundary	0	7.66	6.52	2.20	3.36	13.21	3.11	4.26
25	ER1g	ExonRegion	0	15.22	11.34	9.30	2.66	39.68	5.56	11.96
26	ER1h	ExonRegion	0	25.36	32.06	17.99	7.97	74.38	13.81	42.41
27	E1_Ag	KnownBoundary	0	26.42	30.32	22.72	7.56	65.75	16.62	45.66
28	ER1i	ExonRegion	0	23.41	28.62	21.80	5.48	54.92	10.98	23.34
29	E1_Dc	KnownBoundary	0	24.30	21.44	18.81	2.93	64.13	6.65	16.32
30	E1c_E2a	KnownJunction	0	2.27	3.18	0.73	1.27	0.00	0.00	0.57
31	ER1j	ExonRegion	0	22.13	19.65	14.21	4.26	46.76	8.74	27.32
32	E1d_E3a	KnownJunction	0	21.05	12.85	9.69	5.82	41.70	10.99	38.72
33	E1d_E6a	KnownJunction	0	2.47	3.47	2.07	0.00	3.25	0.00	0.89
34	E2_Aa	NovelBoundary	1	4.97	13.19	0.00	1.52	3.78	0.00	2.48
35	ER2a	ExonRegion	0	3.63	4.91	2.07	3.43	4.41	5.00	9.34
36	E2a_E3a	KnownJunction	0	4.06	2.52	0.00	1.16	0.00	1.29	4.33
37	ER3a	ExonRegion	0	23.71	24.88	13.88	6.70	50.59	9.93	58.38
38	E3a_E4a	KnownJunction	1	23.33	25.75	12.59	4.12	67.31	9.70	91.25
39	E3a_E5a	KnownJunction	0	0.00	2.52	1.74	0.00	2.17	1.63	2.42
40	ER4a	ExonRegion	1	36.52	33.23	15.21	5.70	66.08	16.60	102.43
41	E4a_E5a	KnownJunction	0	22.43	18.02	10.00	0.00	30.48	6.51	55.23
42	I4	Intron	0	1.23	2.10	2.38	1.44	10.45	0.47	6.70
43	I4_AR1	ActiveIntronRegion	0	0.28	0.00	2.13	0.00	11.83	0.00	1.66
44	I4_SR1	SilentIntronRegion	1	1.43	2.82	2.83	1.76	11.38	0.63	8.14
45	ER5a	ExonRegion	0	30.17	23.57	13.88	8.92	48.68	7.31	56.14
46	E5a_E6a	KnownJunction	1	33.65	18.10	12.01	6.20	32.27	2.76	45.92
47	I5_AR2	ActiveIntronRegion	0	1.58	0.33	0.85	1.35	8.56	0.67	4.40
48	ER6a	ExonRegion	0	35.92	26.54	16.80	3.76	53.83	7.59	52.52
49	E6_Da	NovelBoundary	0	11.07	4.39	6.01	3.01	5.62	2.84	2.69
50	E6a_E7b	KnownJunction	0	31.01	21.02	9.41	4.39	50.90	9.67	61.47
51	E7_Aa	NovelBoundary	0	2.84	7.83	2.86	1.60	11.55	1.66	6.03
52	ER7a	ExonRegion	0	4.76	5.35	2.20	1.60	8.67	1.58	5.92
53	E7_Ab	KnownBoundary	0	7.81	4.39	3.85	2.87	6.43	0.00	7.37
54	ER7b	ExonRegion	0	36.71	25.99	16.47	8.02	53.15	11.73	65.93
55	E7a_E8a	KnownJunction	0	28.29	20.12	17.01	7.59	47.24	11.52	48.98
56	ER8a	ExonRegion	0	29.66	21.62	23.69	13.36	58.37	10.63	66.25
57	E8_Da	NovelBoundary	1	1.87	4.36	7.96	7.31	8.90	2.81	10.56
58	E8a_E9a	KnownJunction	0	29.98	23.22	18.80	6.12	41.79	14.77	52.47
59	E9_Aa	NovelBoundary	0	3.54	4.62	4.58	3.06	9.11	9.51	7.55
60	ER9a	ExonRegion	0	29.71	22.92	24.90	7.93	57.58	15.01	66.09
61	E9_Da	KnownBoundary	0	21.58	8.33	9.34	2.47	26.90	11.20	40.10
62	E9a_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
63	E9_Db	KnownBoundary	0	12.70	10.46	13.19	6.07	28.56	4.18	24.59
64	E9b_E9c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
65	ER9b	ExonRegion	0	42.26	32.80	27.10	12.47	68.84	24.52	85.00
66	ER9c	ExonRegion	0	36.36	36.25	29.74	13.98	64.84	22.62	76.41
67	E9_Ab	KnownBoundary	0	14.10	11.35	8.79	4.04	19.34	11.63	28.86
68	E9_Ac	KnownBoundary	1	6.71	7.04	8.81	3.28	17.13	10.43	21.33
69	ER9d	ExonRegion	0	31.51	34.02	31.16	16.21	55.88	31.88	83.65
70	ER9e	ExonRegion	0	31.02	36.35	32.03	14.18	59.57	23.26	79.99
71	E9_Dc	KnownBoundary	0	28.36	34.94	24.52	10.29	64.59	11.39	68.82
72	ER9f	ExonRegion	0	21.72	19.90	13.22	10.13	36.90	10.73	37.13
73	ER9g	ExonRegion	0	2.69	1.82	0.68	0.00	9.72	1.23	0.67