Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C10orf4	Gene	0	44.10	11.05	55.63	16.05	54.16	19.28	34.79
2	394100	Transcript	0	0.00	0.00	0.01	0.08	4.90	0.00	0.00
3	371430	Transcript	0	0.69	0.86	1.23	1.14	3.29	0.00	2.24
4	371426	Transcript	0	0.00	0.01	0.01	0.01	3.03	0.02	0.40
5	359204	Transcript	0	46.25	13.67	73.87	21.73	46.65	34.95	36.89
6	ER1a	ExonRegion	0	26.08	7.74	20.30	10.79	43.24	11.53	17.89
7	E1a_E2a	KnownJunction	0	66.59	19.36	54.35	27.80	67.20	27.98	48.63
8	I1_AR1	ActiveIntronRegion	0	9.77	1.62	13.03	1.80	14.29	2.62	2.36
9	ER2a	ExonRegion	0	150.01	39.08	126.04	53.99	129.15	47.99	95.06
10	E2a_E3a	KnownJunction	0	200.35	51.94	174.60	82.95	207.04	61.69	111.60
11	ER3a	ExonRegion	0	181.50	54.29	189.19	66.10	217.49	59.47	120.74
12	E3a_E4a	KnownJunction	0	145.02	37.49	127.25	41.15	149.64	42.21	94.96
13	ER4a	ExonRegion	0	158.98	34.41	169.26	44.94	181.39	50.37	107.88
14	E4a_E5a	KnownJunction	0	122.12	25.14	151.18	37.71	180.11	51.16	81.60
15	ER5a	ExonRegion	0	145.44	34.66	202.98	43.01	179.24	58.61	117.90
16	E5a_E6a	KnownJunction	0	129.53	27.48	184.29	34.62	187.40	54.03	116.61
17	ER6a	ExonRegion	0	132.50	21.12	179.01	30.62	154.86	55.16	113.72
18	E6_Da	NovelBoundary	1	6.76	1.42	15.97	3.71	22.04	0.00	1.49
19	E6a_E7a	KnownJunction	0	83.45	12.98	110.11	20.16	114.39	36.85	90.43
20	E6a_E8a	NovelJunction	0	12.20	2.86	6.93	5.12	12.86	1.39	3.35
21	I6	Intron	0	7.57	0.17	14.14	3.60	10.01	0.00	2.87
22	I6_AR1	ActiveIntronRegion	0	7.59	0.17	14.18	3.62	10.05	0.00	2.88
23	E7_Aa	NovelBoundary	1	4.92	0.00	15.38	1.46	4.26	0.00	0.00
24	ER7a	ExonRegion	0	86.34	13.94	137.44	29.34	114.23	37.52	100.75
25	E7_Da	NovelBoundary	0	10.15	1.39	18.95	1.49	14.96	0.00	4.53
26	E7a_E8a	KnownJunction	0	95.02	10.56	145.57	25.84	138.46	32.00	81.32
27	I7_AR1	ActiveIntronRegion	0	8.09	0.81	13.75	1.81	10.48	1.00	2.81
28	ER8a	ExonRegion	0	106.56	17.99	138.69	27.08	122.75	36.75	84.10
29	E8a_E9a	KnownJunction	0	90.78	23.54	104.49	23.76	117.62	37.92	65.72
30	ER9a	ExonRegion	0	104.10	23.85	119.61	35.22	76.99	39.67	78.39
31	E9a_E10a	KnownJunction	0	77.21	21.07	80.09	23.98	73.77	41.83	59.22
32	ER10a	ExonRegion	0	66.87	19.04	79.24	24.10	62.32	28.45	52.79
33	E10a_E11a	KnownJunction	0	33.25	12.58	46.85	14.03	46.27	20.61	26.50
34	ER11a	ExonRegion	0	57.40	14.53	79.80	21.35	54.82	35.87	46.67
35	E11a_E12a	KnownJunction	0	56.98	13.85	79.45	17.28	63.58	19.38	60.52
36	ER12a	ExonRegion	0	60.15	15.01	97.72	19.70	49.32	42.34	58.05
37	E12a_E13a	KnownJunction	0	0.97	1.47	1.78	1.68	3.27	0.00	4.11
38	E12a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E12a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.90	0.00	0.89
40	E12a_E18a	KnownJunction	1	42.83	10.30	76.65	16.25	26.19	46.74	32.66
41	ER13a	ExonRegion	0	1.10	1.12	1.91	1.73	6.59	0.00	2.61
42	E13_Da	NovelBoundary	0	33.10	10.09	30.92	17.23	120.36	8.92	24.03
43	E13a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	I13	Intron	0	3.51	1.26	2.85	0.72	19.21	0.50	6.99
45	I13_SR1	SilentIntronRegion	0	3.74	1.58	3.73	0.25	20.19	0.86	6.98
46	I13_AR1	ActiveIntronRegion	0	3.20	0.83	1.65	1.37	17.86	0.00	7.01
47	E14_Aa	NovelBoundary	0	1.89	0.00	1.65	1.27	24.69	0.00	6.35
48	ER14a	ExonRegion	0	0.00	0.00	0.01	0.16	9.81	0.00	0.00
49	E14_Da	NovelBoundary	0	3.64	1.60	1.55	2.90	37.55	0.00	5.39
50	I14	Intron	0	1.47	1.16	2.58	1.19	17.33	0.00	4.82
51	I14_SR1	SilentIntronRegion	0	1.47	1.16	2.58	1.19	17.33	0.00	4.82
52	ER15a	ExonRegion	0	0.02	0.06	0.05	0.06	7.38	0.08	0.46
53	E15_Da	NovelBoundary	0	2.64	2.71	1.49	0.00	26.97	0.00	8.07
54	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	2.35	0.00	0.64
55	I15	Intron	0	3.34	0.10	2.09	0.88	22.84	0.22	6.24
56	I15_SR1	SilentIntronRegion	0	2.99	0.17	2.05	0.74	20.98	0.18	6.23
57	I15_AR1	ActiveIntronRegion	0	3.89	0.00	2.15	1.10	25.80	0.28	6.27
58	E16_Aa	NovelBoundary	0	3.07	0.00	1.41	0.00	27.02	0.00	4.21
59	ER16a	ExonRegion	0	0.00	0.00	0.00	0.00	6.03	0.00	0.00
60	E16b_E18a	NovelJunction	0	2.07	1.52	1.74	2.68	23.10	2.95	0.77
61	ER16b	ExonRegion	0	0.00	0.00	0.00	0.00	4.52	0.00	0.00
62	ER17a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
63	ER18a	ExonRegion	0	69.52	17.56	101.20	31.92	63.67	49.46	49.54
64	E18a_E19a	KnownJunction	0	63.84	23.62	101.71	33.21	75.89	37.79	57.18
65	ER19a	ExonRegion	0	8.82	3.22	15.90	5.55	20.83	5.80	8.17