Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SH2D4B	Gene	0	0.15	0.23	0.42	0.46	0.20	0.28	0.55
2	372150	Transcript	0	0.09	0.00	0.15	1.87	0.43	0.00	0.00
3	339284	Transcript	0	0.00	0.00	0.06	0.00	0.00	0.00	0.30
4	372147	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.40	0.00
5	313455	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	IG46	Intergenic	0	13.38	8.31	10.58	8.26	13.54	3.94	30.43
7	IG46_AR1	ActiveIntergenicRegion	0	77.94	49.48	39.39	42.43	102.71	19.52	193.73
8	IG46_SR1	SilentIntergenicRegion	0	11.99	4.37	5.28	2.99	12.47	3.92	23.61
9	IG46_AR2	ActiveIntergenicRegion	0	19.93	8.91	15.72	7.65	28.18	9.81	46.50
10	IG46_AR3	ActiveIntergenicRegion	0	26.56	13.90	22.54	11.64	32.19	8.88	60.36
11	IG46_AR4	ActiveIntergenicRegion	0	3.42	1.58	3.57	3.53	1.65	1.30	8.17
12	IG46_SR2	SilentIntergenicRegion	0	7.56	4.27	9.10	6.53	3.98	3.60	18.47
13	IG46_AR5	ActiveIntergenicRegion	0	6.04	5.48	8.66	5.75	4.70	2.37	14.09
14	IG46_SR3	SilentIntergenicRegion	0	5.56	3.75	5.43	5.52	2.42	1.35	9.67
15	IG46_AR6	ActiveIntergenicRegion	0	7.03	5.06	8.26	5.08	3.54	2.42	9.63
16	IG46_AR7	ActiveIntergenicRegion	0	10.25	5.76	10.35	6.71	3.86	2.45	15.95
17	IG46_SR4	SilentIntergenicRegion	0	9.57	5.63	13.02	6.95	5.68	1.97	16.97
18	IG46_AR8	ActiveIntergenicRegion	0	8.14	5.34	9.73	6.25	5.38	1.63	18.94
19	IG46_SR5	SilentIntergenicRegion	0	14.22	9.95	9.99	3.31	3.06	0.00	31.32
20	IG46_AR9	ActiveIntergenicRegion	0	3.79	1.20	5.13	2.05	2.41	1.06	16.90
21	ER1a	ExonRegion	0	0.85	0.00	0.83	0.92	0.20	0.00	0.74
22	E1_Ab	KnownBoundary	0	0.00	0.00	0.85	0.00	0.00	0.00	0.00
23	ER1b	ExonRegion	0	0.29	0.91	0.55	0.46	0.10	0.00	0.25
24	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER2a	ExonRegion	0	0.00	0.00	0.17	0.00	0.00	0.00	0.00
27	ER2b	ExonRegion	0	0.00	0.58	1.31	0.00	0.26	0.59	1.43
28	E2a_E3a	KnownJunction	0	0.00	0.00	0.53	0.00	0.00	1.37	0.89
29	ER3a	ExonRegion	0	0.39	0.00	0.67	0.00	0.14	1.26	0.86
30	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	2.21	0.00	0.54
31	ER4a	ExonRegion	0	0.00	0.00	0.70	1.28	0.14	1.02	0.03
32	E4_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	1.61	0.00
33	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER4b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.40	0.00
35	ER5a	ExonRegion	0	0.00	0.00	0.24	0.00	0.00	0.00	0.00
36	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER6a	ExonRegion	0	0.00	0.00	0.00	0.51	0.23	0.00	0.20
38	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	1.52	1.06	0.00	0.00
39	E6a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.89
40	ER7a	ExonRegion	0	0.26	0.00	0.44	1.52	0.24	0.00	0.00
41	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	2.57	0.00	0.00	0.00
42	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER9a	ExonRegion	0	0.12	0.19	0.39	0.52	0.29	0.38	0.80
45	E9_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.72
46	ER9b	ExonRegion	0	0.00	0.31	0.17	0.00	0.07	0.00	0.32