Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CDH23	Gene	0	1.15	0.70	2.42	4.96	3.96	3.97	0.24
2	398842	Transcript	0	0.00	0.00	0.21	1.00	2.31	1.14	0.00
3	398828	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	398792	Transcript	0	0.16	0.25	0.21	0.87	0.28	0.80	0.00
5	398860	Transcript	0	0	0	0	0	0	0	0
6	398855	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	299366	Transcript	0	0.00	0.00	0.15	0.62	1.58	0.05	0.12
8	224721	Transcript	0	0.00	0.00	0.00	2.57	0.00	0.00	0.00
9	398809	Transcript	0	0.00	0.00	0.34	1.25	1.62	0.00	0.00
10	398788	Transcript	0	0.00	0.00	0.00	3.24	0.29	0.00	0.00
11	IG32_AR4	ActiveIntergenicRegion	0	1.07	1.21	0.39	1.00	8.83	1.35	2.74
12	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER1b	ExonRegion	0	0.00	0.00	0.27	2.75	0.68	1.49	0.00
14	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	4.71	4.47	1.15	0.00
15	ER2a	ExonRegion	0	0.00	0.00	0.24	8.04	1.65	7.12	0.00
16	E2a_E3a	KnownJunction	0	0.00	0.00	1.61	6.85	3.25	15.22	0.00
17	ER3a	ExonRegion	0	0.00	0.00	3.28	8.03	7.82	11.71	0.00
18	E3a_E4a	KnownJunction	0	0.00	0.00	3.12	7.40	8.67	9.14	0.00
19	ER4a	ExonRegion	0	0.00	0.00	2.25	5.67	6.96	8.01	0.00
20	E4a_E5a	KnownJunction	0	0.00	0.00	1.44	3.98	9.80	4.15	0.00
21	ER5a	ExonRegion	0	0.00	0.00	2.05	1.71	8.40	5.77	0.00
22	E5a_E6a	KnownJunction	0	0.00	0.00	3.98	1.44	8.46	8.17	0.00
23	ER6a	ExonRegion	0	0.00	0.00	3.53	2.45	15.67	6.57	0.00
24	E6a_E7a	KnownJunction	0	0.00	0.00	1.49	1.41	15.31	1.53	0.00
25	E6b_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER6b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER7a	ExonRegion	0	0.15	0.00	2.08	7.01	12.49	3.76	0.00
28	E7a_E8a	KnownJunction	0	1.67	0.00	2.97	10.65	12.75	11.18	0.00
29	ER8a	ExonRegion	0	0.68	0.00	3.19	8.43	24.65	12.43	0.00
30	E8a_E9a	KnownJunction	0	0.00	0.00	0.83	5.31	33.27	14.55	0.00
31	ER9a	ExonRegion	0	0.00	0.00	2.53	13.64	19.14	10.03	0.00
32	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	E9a_E10b	KnownJunction	0	0.00	0.00	5.48	15.06	28.63	12.17	0.00
34	ER10a	ExonRegion	0	0.00	0.00	0.68	2.14	3.36	1.93	0.00
35	ER10b	ExonRegion	0	0.00	0.56	4.47	8.18	16.97	6.66	0.00
36	E10a_E11a	KnownJunction	0	0.00	1.44	6.73	19.97	31.51	5.57	0.00
37	ER11a	ExonRegion	0	0.00	0.64	5.35	14.20	27.46	5.41	0.00
38	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	1.49	4.66	1.66	0.00
39	E11a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E11a_E13b	KnownJunction	0	0.00	0.00	3.94	6.39	13.37	0.00	0.00
41	E12a_E13b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER12a	ExonRegion	0	0.00	0.00	0.00	2.49	4.05	2.45	0.00
43	ER13a	ExonRegion	0	0.00	0.00	0.48	1.25	3.36	0.35	0.00
44	ER13b	ExonRegion	0	0.00	0.00	4.27	8.94	19.22	5.78	0.00
45	E13a_E14a	KnownJunction	0	0.00	0.00	3.81	4.12	23.49	1.66	0.00
46	ER14a	ExonRegion	0	0.00	0.00	4.85	4.55	21.13	2.01	0.00
47	E14_Da	KnownBoundary	0	0.00	0.00	0.83	0.00	0.00	1.34	0.00
48	E14a_E15a	KnownJunction	0	0.00	0.00	2.50	5.01	12.61	2.68	0.00
49	ER14b	ExonRegion	0	0.00	0.00	0.84	0.00	0.52	0.43	0.00
50	ER15a	ExonRegion	0	0.00	0.00	4.22	4.12	14.10	1.57	0.00
51	E15a_E16a	KnownJunction	0	0.00	0.00	5.46	5.72	11.41	1.34	0.00
52	ER16a	ExonRegion	0	0.00	0.00	6.01	4.99	10.32	0.60	0.00
53	E16_Ac	KnownBoundary	0	0.00	0.00	4.50	1.25	14.22	1.15	0.00
54	ER16b	ExonRegion	0	0.00	0.00	4.19	3.74	12.00	1.11	0.00
55	ER16c	ExonRegion	0	0.00	0.00	4.74	4.16	11.61	1.63	0.00
56	ER16d	ExonRegion	0	0.00	0.00	3.39	4.09	16.48	2.88	0.00
57	E16b_E17a	KnownJunction	0	0.00	0.00	5.14	2.22	28.35	5.17	0.00
58	ER17a	ExonRegion	0	0.00	0.00	4.05	4.32	14.21	5.66	0.00
59	E17a_E18a	KnownJunction	0	0.00	0.00	3.00	9.56	15.75	6.22	0.00
60	ER18a	ExonRegion	0	0.00	0.00	5.69	9.71	15.22	7.71	0.00
61	E18a_E19a	KnownJunction	0	0.00	0.00	5.82	9.40	31.58	7.40	0.00
62	ER19a	ExonRegion	0	0.00	0.00	3.30	7.12	10.96	2.57	0.00
63	E19a_E20a	KnownJunction	0	0.00	0.00	3.33	5.39	14.82	0.00	0.00
64	ER20a	ExonRegion	0	0.00	0.00	3.97	4.93	12.67	5.13	0.00
65	E20a_E21a	KnownJunction	0	0.00	0.00	1.68	3.96	3.39	1.66	0.00
66	ER21a	ExonRegion	0	0.29	0.00	1.64	3.86	8.54	4.18	0.00
67	E21a_E22a	KnownJunction	0	1.03	0.00	3.18	5.66	12.31	2.89	0.00
68	ER22a	ExonRegion	0	0.23	0.00	2.28	4.55	15.54	4.72	0.00
69	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	5.88	8.90	1.21	0.00
70	ER23a	ExonRegion	0	0.31	0.00	1.35	7.35	7.49	8.32	0.00
71	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	1.46	10.47	6.75	0.00
72	ER24a	ExonRegion	0	0.00	0.00	1.89	8.33	6.88	5.74	0.00
73	E24a_E25a	KnownJunction	0	0.00	0.00	1.16	6.29	5.12	1.37	0.00
74	ER25a	ExonRegion	0	0.00	0.00	0.98	3.53	5.22	2.02	0.00
75	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
76	E25a_E26b	KnownJunction	0	0.00	0.00	1.78	2.90	7.05	0.00	0.00
77	ER26a	ExonRegion	0	0.00	0.00	0.68	2.49	3.24	0.00	0.00
78	ER26b	ExonRegion	0	0.00	0.00	2.08	4.36	6.84	1.94	0.30
79	E26_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	10.97	1.31	0.56
80	E26a_E27a	KnownJunction	0	0.00	0.00	1.47	3.77	3.41	1.63	0.00
81	ER26c	ExonRegion	0	0.00	0.00	0.15	0.62	1.58	0.05	0.12
82	ER27a	ExonRegion	0	0.00	0.00	1.96	5.73	2.34	1.66	0.00
83	E27_Da	KnownBoundary	0	0.00	0.00	2.33	7.45	0.92	2.25	0.00
84	ER27b	ExonRegion	0	0.00	0.00	2.24	4.86	2.28	1.15	0.00
85	E27b_E28a	KnownJunction	0	0.00	0.00	2.34	2.93	1.98	0.00	0.00
86	E28_Aa	NovelBoundary	0	0.00	1.23	0.68	2.14	10.47	0.00	0.00
87	ER28a	ExonRegion	0	0.00	0.00	2.75	2.34	2.31	0.75	0.00
88	E28a_E29a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
89	E28a_E30a	KnownJunction	0	0.00	0.00	4.04	1.27	2.03	1.23	0.00
90	ER29a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
91	ER30a	ExonRegion	0	0.00	0.00	3.71	2.82	0.62	3.30	0.00
92	E30a_E31a	KnownJunction	0	0.00	0.00	2.23	3.85	0.00	5.17	0.00
93	E30a_E32a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
94	ER31a	ExonRegion	0	0.00	0.00	1.63	3.08	0.91	2.83	0.02
95	E31a_E32a	KnownJunction	0	0.00	0.00	3.54	1.68	1.08	6.32	0.00
96	ER32a	ExonRegion	0	0.00	0.00	2.41	2.22	0.46	4.25	0.36
97	E32a_E33a	KnownJunction	0	0.00	0.00	2.18	1.44	0.90	3.83	0.00
98	ER33a	ExonRegion	0	0.30	0.00	1.72	1.86	0.87	3.52	0.19
99	E33a_E34a	KnownJunction	0	0.00	0.00	1.39	2.98	0.00	4.48	0.89
100	ER34a	ExonRegion	0	0.00	0.00	1.21	3.33	0.36	2.34	0.30
101	E34a_E35a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
102	E34a_E36a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
103	E34a_E36b	KnownJunction	0	0.00	0.00	0.56	2.60	0.85	2.41	0.00
104	E35a_E36b	KnownJunction	0	0.00	0.00	0.00	1.46	0.00	0.00	0.00
105	ER35a	ExonRegion	0	0.00	0.00	0.00	6.23	0.00	0.00	0.00
106	ER36a	ExonRegion	0	0.00	0.00	0.17	2.18	0.20	0.61	0.00
107	ER36b	ExonRegion	0	0.00	1.86	0.55	4.39	0.03	5.21	1.02
108	E36a_E37a	KnownJunction	0	0.00	0.00	2.20	1.11	0.00	2.63	0.00
109	ER37a	ExonRegion	0	0.00	0.72	0.99	3.31	0.32	2.16	0.00
110	E37a_E38a	KnownJunction	0	0.00	0.00	0.59	8.13	0.00	4.88	0.00
111	ER38a	ExonRegion	0	0.00	0.00	2.05	3.52	0.64	2.10	0.00
112	E38a_E39a	KnownJunction	0	0.00	0.00	1.58	9.29	0.00	1.58	0.00
113	ER39a	ExonRegion	0	0.37	0.20	3.25	6.09	0.54	2.68	1.12
114	E39_Da	KnownBoundary	0	1.03	1.63	0.55	0.00	0.00	0.00	0.00
115	E39a_E40a	KnownJunction	0	0.00	0.00	2.27	2.63	0.00	3.00	0.00
116	ER39b	ExonRegion	0	0.48	0.75	0.08	0.00	0.00	0.00	0.00
117	Ix_AR6	ActiveIntronRegion	0	2.06	20.21	0.39	11.86	0.00	5.49	6.70
118	ER40a	ExonRegion	0	0.00	0.00	1.54	2.46	0.36	3.32	0.00
119	E40a_E41a	KnownJunction	0	0.00	0.00	0.72	4.06	0.00	2.68	0.00
120	ER41a	ExonRegion	0	0.00	0.00	1.29	5.90	0.16	5.00	0.43
121	E41a_E42a	KnownJunction	0	0.00	0.00	0.56	5.36	1.18	2.89	0.00
122	ER42a	ExonRegion	0	0.00	0.00	1.07	2.94	0.35	3.73	0.00
123	E42a_E43a	KnownJunction	0	0.00	0.00	1.28	3.36	0.00	7.21	0.00
124	ER43a	ExonRegion	0	0.00	0.00	0.81	5.08	0.00	2.96	0.00
125	E43a_E44a	KnownJunction	0	0.00	0.00	0.00	1.25	0.00	3.54	0.00
126	ER44a	ExonRegion	0	0.00	0.00	1.93	4.31	0.20	1.64	0.00
127	E44a_E45a	KnownJunction	0	0.00	0.00	2.23	0.00	0.00	4.07	0.00
128	ER45a	ExonRegion	0	0.00	0.00	2.42	1.06	0.37	1.86	0.00
129	E45a_E46a	KnownJunction	0	0.00	0.00	3.32	1.54	0.00	1.02	0.00
130	ER46a	ExonRegion	0	0.00	0.00	1.82	0.21	0.00	1.31	0.00
131	E46a_E47a	KnownJunction	0	0.00	0.00	0.50	1.30	0.00	2.49	0.00
132	ER47a	ExonRegion	0	0.00	0.00	0.94	3.32	0.33	1.93	0.00
133	E47a_E48a	KnownJunction	0	0.00	0.00	0.79	2.82	0.00	0.00	0.00
134	ER48a	ExonRegion	0	0.00	0.00	2.03	4.30	0.20	3.55	0.00
135	E48a_E49a	KnownJunction	0	0.00	0.00	0.00	3.31	1.06	1.15	0.00
136	ER49a	ExonRegion	0	0.01	0.00	1.65	6.03	0.42	1.32	0.00
137	E49a_E50a	KnownJunction	0	0.00	0.00	1.38	2.57	2.95	2.47	0.00
138	E50_Aa	NovelBoundary	0	1.64	1.34	3.38	7.91	0.00	14.47	0.00
139	ER50a	ExonRegion	0	0.47	0.00	3.12	5.86	0.44	2.88	0.00
140	E50a_E51a	KnownJunction	0	0.00	0.00	0.00	4.55	0.00	0.00	0.00
141	ER51a	ExonRegion	0	0.26	0.41	2.15	5.97	0.91	5.60	0.00
142	E51a_E52a	KnownJunction	0	0.00	0.00	2.17	5.26	0.00	2.57	0.00
143	ER52a	ExonRegion	0	0.00	1.09	2.56	8.52	0.32	3.51	0.00
144	E52a_E53a	KnownJunction	0	0.00	0.00	3.08	7.21	1.11	0.00	0.00
145	ER53a	ExonRegion	0	1.69	0.00	4.09	6.32	0.38	1.62	0.00
146	E53a_E54a	KnownJunction	0	0.00	0.00	3.28	5.99	1.18	2.28	0.00
147	ER54a	ExonRegion	0	0.01	1.54	2.27	4.34	1.15	6.13	0.00
148	E54a_E55a	KnownJunction	0	0.00	0.00	1.45	1.60	0.00	1.37	0.00
149	E55_Aa	NovelBoundary	0	0.83	4.07	0.59	4.20	0.00	10.00	1.69
150	ER55a	ExonRegion	0	3.81	3.11	3.35	5.30	0.01	6.83	0.00
151	E55_Da	NovelBoundary	0	3.72	2.42	0.89	3.28	0.00	12.35	0.89
152	E55a_E56a	KnownJunction	0	0.00	0.00	0.60	2.87	0.00	3.06	0.00
153	ER56a	ExonRegion	0	3.56	4.77	1.74	7.04	0.39	6.44	1.21
154	E56a_E57a	KnownJunction	0	0.00	0.00	2.80	1.63	0.00	0.00	0.00
155	ER57a	ExonRegion	0	0.61	1.44	1.94	3.60	0.00	3.35	0.27
156	E57a_E58a	KnownJunction	0	0.00	0.00	2.11	1.46	0.00	0.00	0.00
157	ER58a	ExonRegion	0	1.51	0.79	0.91	4.34	0.00	3.97	0.00
158	E58a_E59a	KnownJunction	0	0.00	0.00	2.27	0.00	0.00	1.13	0.00
159	ER59a	ExonRegion	0	2.25	1.43	2.00	5.31	0.95	3.78	1.17
160	E59_Da	NovelBoundary	0	4.96	11.27	3.22	1.68	0.00	4.18	0.00
161	E59a_E60a	KnownJunction	0	0.00	0.00	0.55	2.84	0.00	1.26	0.00
162	ER60a	ExonRegion	0	4.17	1.45	3.71	6.97	1.30	5.23	0.42
163	E60_Da	NovelBoundary	0	4.74	3.57	0.78	6.23	3.62	7.99	0.66
164	E60a_E61a	KnownJunction	0	3.09	0.00	2.62	3.14	0.00	1.45	0.00
165	E61_Aa	NovelBoundary	0	1.64	8.41	1.06	2.74	0.00	3.30	0.00
166	ER61a	ExonRegion	0	3.21	2.26	1.87	6.03	2.30	4.39	0.92
167	E61_Da	NovelBoundary	0	4.84	4.07	0.89	8.48	1.11	0.00	0.00
168	E61a_E62a	KnownJunction	0	0.00	0.00	0.00	8.24	0.00	0.00	0.00
169	E62_Aa	NovelBoundary	0	1.72	1.63	0.66	3.12	2.01	10.37	3.93
170	ER62a	ExonRegion	0	4.54	3.95	3.29	8.77	1.60	8.43	1.40
171	E62_Da	NovelBoundary	0	4.69	1.08	0.50	1.19	1.18	9.00	1.22
172	E62a_E63a	KnownJunction	0	0.00	0.00	5.43	3.28	0.00	5.68	0.00
173	ER63a	ExonRegion	0	5.51	4.69	5.76	5.62	3.76	4.29	1.54
174	E63_Da	NovelBoundary	0	7.21	1.63	2.53	10.08	2.17	9.51	2.94
175	E63a_E64a	KnownJunction	0	0.00	0.00	3.10	4.14	0.00	3.30	0.00
176	E64_Aa	NovelBoundary	0	12.10	7.22	9.07	3.12	1.18	0.00	2.35
177	ER64a	ExonRegion	0	1.00	0.73	2.84	6.95	0.36	3.00	0.01
178	E64_Da	NovelBoundary	0	10.50	2.86	0.65	2.79	0.00	1.05	0.63
179	E64a_E65a	KnownJunction	0	0.00	0.00	4.34	5.42	0.00	3.75	0.00
180	ER65a	ExonRegion	0	0.70	0.00	4.66	9.18	1.52	2.87	0.00
181	E65a_E66a	KnownJunction	0	0.00	0.00	4.84	12.19	0.00	4.26	0.00
182	ER66a	ExonRegion	0	0.00	0.00	2.48	5.14	0.00	4.72	0.00
183	E66a_E67a	KnownJunction	0	0.00	0.00	0.82	3.93	0.00	5.63	0.00
184	ER67a	ExonRegion	0	0.00	0.00	1.88	4.42	0.49	5.87	0.00
185	E67a_E69a	KnownJunction	0	0.00	0.00	3.68	1.33	2.26	2.20	0.00
186	ER68a	ExonRegion	0	0.00	0.00	0.00	1.88	0.58	0.00	0.00
187	E68a_E69a	KnownJunction	0	0.00	0.00	0.00	4.61	0.00	0.00	0.00
188	ER69a	ExonRegion	0	2.26	1.42	5.95	5.93	0.72	7.52	0.81
189	E69a_E70a	KnownJunction	0	0.00	0.00	3.68	3.36	0.00	2.39	0.00
190	ER70a	ExonRegion	0	2.27	0.75	3.05	9.74	0.67	5.59	1.22
191	E70a_E71a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
192	E70a_E72a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
193	ER71a	ExonRegion	0	1.65	2.64	0.25	1.34	0.39	1.55	0.00
194	E71a_E72a	KnownJunction	0	0.00	0.00	0.00	1.68	0.00	1.37	0.00
195	ER72a	ExonRegion	0	6.78	1.95	5.05	6.50	0.93	7.11	0.78
196	E72_Da	KnownBoundary	0	9.81	0.00	0.53	5.61	0.00	5.79	0.00
197	ER72b	ExonRegion	0	8.83	4.47	4.29	5.61	1.06	5.50	0.70
198	E72_Db	KnownBoundary	0	6.78	1.63	3.26	4.71	0.00	0.00	2.26
199	ER72c	ExonRegion	0	1.27	0.99	1.89	1.81	0.71	0.00	0.74
200	IG33_AR1	ActiveIntergenicRegion	0	10.43	8.50	7.55	2.49	0.81	1.05	0.67