Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	SEMA4D	Gene	0	62.53	149.10	19.46	31.89	50.31	56.53
2	422704	Transcript	0	10.52	38.51	6.78	11.99	0.00	0.00
3	420670	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
4	429836	Transcript	0	24.22	88.60	43.82	70.32	5.86	3.94
5	438547	Transcript	0	0	0	0	0	0	0
6	356444	Transcript	0	0	0	0	0	0	0
7	420987	Transcript	0	0	0	0	0	0	0
8	339861	Transcript	0	0	0	0	0	0	0
9	482128	Transcript	0	2.50	3.06	0.09	4.21	0.00	0.00
10	420681	Transcript	0	0.00	3.37	0.00	0.00	0.00	0.00
11	418828	Transcript	0	0.00	3.32	0.00	2.77	0.00	0.00
12	450295	Transcript	0	4.81	5.94	3.05	2.36	34.65	61.92
13	343780	Transcript	0	0	0	0	0	0	0
14	464051	Transcript	0	0.38	4.12	1.93	0.43	0.02	0.03
15	433650	Transcript	0	4.10	0.00	0.63	1.86	0.00	0.00
16	474258	Transcript	0	4.38	1.75	0.00	0.77	0.00	0.00
17	455551	Transcript	0	0	0	0	0	0	0
18	486935	Transcript	0	14.84	25.76	5.41	3.18	0.69	0.58
19	492386	Transcript	0	0	0	0	0	0	0
20	469653	Transcript	0	11.17	9.95	4.57	3.48	3.01	0.09
21	475255	Transcript	0	4.85	10.10	2.10	2.74	0.05	0.15
22	420101	Transcript	0	0	0	0	0	0	0
23	ER1a	ExonRegion	0	4.34	8.50	4.19	3.88	0.00	0.00
24	E1a_E4a	KnownJunction	0	10.00	25.70	6.55	6.25	0.00	0.00
25	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
26	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
27	E3_Aa	NovelBoundary	0	33.68	29.30	153.30	77.26	76.83	33.92
28	ER3a	ExonRegion	0	24.22	88.60	43.82	70.32	5.86	3.94
29	E3_Ab	KnownBoundary	1	177.39	54.95	174.48	116.20	90.64	30.14
30	ER3b	ExonRegion	1	18.15	111.33	30.68	78.33	0.76	0.61
31	E3_Da	NovelBoundary	0	82.67	107.71	95.29	61.60	32.71	56.67
32	E3a_E4a	KnownJunction	1	42.00	200.74	2.68	29.52	0.00	0.00
33	I3_AR4	ActiveIntronRegion	0	4.24	1.29	1.98	1.18	11.17	4.17
34	ER4a	ExonRegion	1	45.27	215.75	13.66	49.03	0.03	2.33
35	E4a_E6b	KnownJunction	0	13.50	36.50	3.42	17.51	0.00	5.04
36	E4a_E7b	KnownJunction	0	30.01	110.63	12.87	29.47	0.00	4.45
37	E4a_E9a	KnownJunction	0	17.23	81.33	9.62	25.83	0.00	0.00
38	I4_AR1	ActiveIntronRegion	0	30.45	12.47	14.52	2.49	0.00	2.24
39	I4_AR2	ActiveIntronRegion	0	19.05	8.26	9.41	6.46	0.00	1.41
40	ER5a	ExonRegion	0	4.99	2.68	0.18	1.68	0.00	0.00
41	E5_Ab	KnownBoundary	0	0.00	5.57	0.00	0.00	0.00	0.00
42	E5_Ac	KnownBoundary	0	3.37	3.26	3.30	5.82	0.00	0.00
43	ER5b	ExonRegion	0	3.38	7.79	3.04	5.17	0.00	0.00
44	ER5c	ExonRegion	0	4.12	7.90	1.79	7.78	0.00	0.00
45	E5a_E6b	KnownJunction	0	0.00	3.43	0.00	6.74	0.00	0.00
46	E5a_E7b	KnownJunction	0	0.00	3.37	0.00	0.00	0.00	0.00
47	E5a_E9a	KnownJunction	0	0.00	3.32	0.00	2.77	0.00	0.00
48	I5_AR1	ActiveIntronRegion	0	5.14	6.16	4.84	6.85	0.54	0.00
49	ER6a	ExonRegion	0	2.40	2.11	2.09	2.92	0.00	4.26
50	E6_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
51	ER6b	ExonRegion	0	13.12	48.37	2.82	10.77	0.73	1.93
52	E6a_E7b	KnownJunction	1	30.07	96.91	0.00	14.35	5.08	5.21
53	ER7a	ExonRegion	0	0.38	4.12	1.93	0.43	0.02	0.03
54	E7_Ab	KnownBoundary	0	0.00	2.36	2.50	0.00	0.00	0.00
55	ER7b	ExonRegion	0	49.68	235.87	41.07	68.62	3.09	1.94
56	E7a_E9a	KnownJunction	0	58.45	241.35	53.97	68.18	3.83	0.00
57	I7_AR1	ActiveIntronRegion	0	0.00	2.08	8.68	3.70	15.40	17.12
58	ER8a	ExonRegion	0	1.50	0.00	1.25	3.72	0.00	0.00
59	E8a_E9a	KnownJunction	0	6.69	0.00	0.00	0.00	0.00	0.00
60	ER9a	ExonRegion	0	67.05	245.30	35.67	69.99	5.74	2.81
61	E9_Da	KnownBoundary	1	54.35	202.43	7.06	46.05	7.16	11.25
62	ER9b	ExonRegion	0	55.20	258.68	17.91	47.03	4.23	4.56
63	E9_Db	KnownBoundary	0	76.22	318.18	31.82	42.79	22.14	5.21
64	ER9c	ExonRegion	0	65.91	237.64	34.76	52.06	6.45	7.39
65	E9_Dc	KnownBoundary	0	74.18	216.83	33.13	53.45	28.80	30.81
66	ER9d	ExonRegion	0	71.17	266.41	44.00	59.77	12.22	20.90
67	E9d_E10a	KnownJunction	0	110.03	368.52	70.47	100.97	32.46	78.25
68	ER10a	ExonRegion	1	98.35	325.89	62.79	94.22	8.46	27.74
69	E10_Da	KnownBoundary	1	106.35	334.72	29.49	79.71	3.83	45.17
70	ER10b	ExonRegion	0	80.02	334.66	29.40	72.36	9.30	20.17
71	E10_Db	NovelBoundary	0	66.70	302.21	24.08	74.06	29.72	35.18
72	E10c_E11a	KnownJunction	0	114.67	401.76	60.06	131.20	27.88	56.00
73	ER10c	ExonRegion	0	87.16	360.75	47.80	109.44	14.10	20.22
74	ER11a	ExonRegion	0	99.33	397.77	79.83	119.44	5.08	13.34
75	E11a_E12a	KnownJunction	1	86.23	466.61	93.76	93.09	3.41	15.87
76	ER12a	ExonRegion	0	116.68	397.67	44.17	86.41	0.71	6.54
77	E12a_E13a	KnownJunction	0	93.82	381.34	43.95	32.08	5.16	8.82
78	ER13a	ExonRegion	0	98.67	389.14	56.46	88.71	0.94	7.66
79	E13a_E14a	KnownJunction	0	114.85	440.46	73.26	129.35	3.50	4.28
80	ER14a	ExonRegion	0	96.10	373.61	50.67	90.99	1.93	6.84
81	E14a_E15a	KnownJunction	0	130.39	433.15	81.80	121.69	0.00	16.37
82	ER15a	ExonRegion	0	88.02	327.69	40.31	97.32	4.21	5.31
83	E15a_E16a	KnownJunction	0	118.10	350.58	36.77	90.91	12.40	4.03
84	ER16a	ExonRegion	0	97.42	330.76	39.59	67.67	2.40	3.94
85	E16a_E17a	KnownJunction	0	141.72	406.15	57.21	46.76	14.23	10.41
86	E16a_E18a	NovelJunction	0	6.99	9.45	0.00	0.00	0.00	0.00
87	ER17a	ExonRegion	0	107.46	393.62	58.33	78.71	5.13	4.31
88	E17_Ab	KnownBoundary	0	137.44	503.40	70.64	115.54	0.00	0.00
89	ER17b	ExonRegion	0	92.15	354.92	41.59	79.35	1.61	2.80
90	E17a_E18a	KnownJunction	0	85.14	410.25	31.99	93.09	0.00	9.07
91	ER18a	ExonRegion	0	139.35	467.71	61.68	108.09	3.18	2.74
92	E18_Ab	KnownBoundary	0	203.79	694.69	92.56	121.63	0.00	4.53
93	ER18b	ExonRegion	0	126.62	480.87	58.63	102.12	4.04	5.77
94	E18_Da	KnownBoundary	0	3.19	5.85	0.00	0.00	0.00	0.00
95	E18a_E19a	KnownJunction	0	168.30	467.68	23.79	69.49	9.82	4.03
96	ER18c	ExonRegion	0	4.38	1.75	0.00	0.77	0.00	0.00
97	E19_Aa	NovelBoundary	0	6.27	16.48	12.30	0.00	0.00	0.00
98	ER19a	ExonRegion	0	100.82	426.74	26.93	70.42	5.02	4.72
99	E19a_E20b	KnownJunction	0	62.61	317.56	25.22	66.06	9.24	15.11
100	E19a_E22c	NovelJunction	0	10.12	41.00	0.00	5.87	0.00	0.00
101	E19a_E24c	KnownJunction	1	10.00	75.31	0.00	6.31	0.00	0.00
102	I19	Intron	0	13.29	14.26	5.55	7.11	0.80	0.33
103	I19_SR1	SilentIntronRegion	0	13.24	13.60	5.39	6.98	1.25	0.00
104	I19_AR1	ActiveIntronRegion	0	14.05	15.61	5.60	6.01	0.00	1.59
105	I19_AR2	ActiveIntronRegion	0	12.57	15.32	6.16	9.16	0.00	0.00
106	I19	Intron	0	13.57	19.60	5.74	4.53	0.54	0.11
107	I19_SR1	SilentIntronRegion	0	13.76	17.19	5.57	4.52	0.27	0.13
108	I19_AR1	ActiveIntronRegion	0	12.58	34.60	6.90	4.62	2.23	0.00
109	E20_Aa	NovelBoundary	0	14.40	52.03	23.57	3.37	4.83	0.00
110	ER20a	ExonRegion	0	14.84	25.76	5.41	3.18	0.69	0.58
111	E20_Ab	KnownBoundary	0	21.69	21.65	9.96	9.46	5.16	0.00
112	ER20b	ExonRegion	0	70.64	289.75	30.69	52.06	3.84	5.60
113	E20a_E21a	KnownJunction	0	44.65	199.61	17.48	47.85	5.16	0.00
114	ER21a	ExonRegion	1	40.36	256.20	25.38	57.23	5.14	3.28
115	E21_Da	NovelBoundary	1	3.74	3.37	0.00	0.00	4.74	37.28
116	E21a_E22a	KnownJunction	0	22.54	85.38	20.89	43.72	4.74	4.53
117	E21a_E22c	KnownJunction	1	26.87	212.10	9.79	21.37	4.66	8.73
118	E21a_E24c	NovelJunction	0	0.00	10.18	0.00	0.00	0.00	0.00
119	I21_AR1	ActiveIntronRegion	0	5.34	10.38	2.69	2.37	15.47	14.25
120	E22_Aa	NovelBoundary	0	17.05	18.73	2.62	16.04	0.00	0.00
121	ER22a	ExonRegion	0	37.03	120.83	32.61	44.22	3.12	3.92
122	E22_Da	KnownBoundary	0	46.88	163.62	20.95	51.93	4.66	8.90
123	ER22b	ExonRegion	0	137.60	183.24	44.88	60.59	151.82	96.26
124	E22_Db	KnownBoundary	0	163.35	233.64	9.11	15.39	643.33	973.14
125	ER22c	ExonRegion	0	125.85	181.03	16.18	18.38	762.51	671.50
126	E22_Ab	KnownBoundary	1	137.75	116.09	29.54	24.09	2778.98	1189.08
127	ER22d	ExonRegion	1	94.40	90.07	21.73	15.61	759.20	319.48
128	E22_Dc	KnownBoundary	0	85.74	90.16	15.54	21.15	10.32	23.84
129	ER22e	ExonRegion	0	51.09	76.09	14.03	13.48	15.02	11.46
130	E22_Ac	KnownBoundary	0	86.11	83.75	8.25	19.36	19.31	19.90
131	ER22f	ExonRegion	0	59.31	250.08	11.51	24.17	21.17	21.68
132	E22_Dd	KnownBoundary	0	7.17	21.88	0.00	0.00	25.39	42.90
133	E22d_E24c	KnownJunction	1	78.69	312.78	3.53	26.53	8.66	31.40
134	ER22g	ExonRegion	0	7.22	9.76	4.00	1.79	69.29	119.59
135	E22_De	NovelBoundary	0	6.51	8.38	0.00	0.00	22.31	64.65
136	I22_AR1	ActiveIntronRegion	0	17.27	7.51	10.17	19.34	0.50	0.10
137	ER23a	ExonRegion	0	8.79	7.69	2.94	3.86	0.85	0.18
138	E23a_E24c	KnownJunction	0	13.56	12.21	6.20	3.10	5.16	0.00
139	I23	Intron	0	12.60	9.82	8.44	5.70	5.80	2.50
140	I23_AR1	ActiveIntronRegion	0	12.66	9.87	8.48	5.73	5.83	2.51
141	ER24a	ExonRegion	0	6.60	14.25	2.10	3.55	0.00	0.14
142	E24_Ab	KnownBoundary	0	23.86	17.83	3.53	7.67	0.00	0.00
143	ER24b	ExonRegion	0	13.38	16.28	2.91	4.18	1.13	0.74
144	E24_Ac	KnownBoundary	0	25.55	21.26	5.58	5.93	4.33	8.14
145	ER24c	ExonRegion	0	179.74	512.04	29.96	82.39	20.99	28.65
146	E24_Da	KnownBoundary	0	0.00	6.97	3.42	0.00	0.00	0.00
147	E24a_E24d	KnownJunction	0	210.53	651.32	35.64	111.25	36.96	63.14
148	ER24d	ExonRegion	0	3.11	5.94	2.10	1.93	0.10	0.16
149	E24_Ad	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
150	ER24e	ExonRegion	0	167.56	567.71	37.20	77.66	25.52	24.87
151	E24b_E25a	KnownJunction	0	292.66	769.55	34.27	102.66	98.72	73.38
152	ER25a	ExonRegion	1	179.62	587.45	25.87	86.14	36.44	66.18
153	E25_Da	KnownBoundary	0	215.17	648.06	20.72	56.98	105.38	226.60
154	ER25b	ExonRegion	0	314.93	833.93	31.51	93.08	83.53	188.90
155	E25_Db	KnownBoundary	0	234.70	801.83	18.90	22.56	203.43	539.25
156	ER25c	ExonRegion	1	205.92	593.87	20.94	41.37	282.01	728.07
157	E25_Dc	KnownBoundary	0	30.49	26.27	9.56	3.26	80.24	116.28
158	ER25d	ExonRegion	0	27.52	31.21	12.24	6.95	59.06	61.20
159	IG32_SR1	SilentIntergenicRegion	0	3.59	7.03	5.19	3.40	5.85	4.26