Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	CNTNAP3	Gene	0	1.84	1.06	5.31	2.52	3.08	1.18
2	377653	Transcript	0	0.15	0.17	0.24	0.10	0.03	0.23
3	443583	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
4	377651	Transcript	0	0	0	0	0	0	0
5	377659	Transcript	0	2.81	0.00	2.11	0.93	8.22	2.86
6	377557	Transcript	0	0	0	0	0	0	0
7	377656	Transcript	0	0	0	0	0	0	0
8	323947	Transcript	0	0	0	0	0	0	0
9	297668	Transcript	0	2.67	0.35	3.09	1.27	7.38	2.56
10	358144	Transcript	0	2.06	0.11	6.04	2.62	2.87	0.29
11	469061	Transcript	0	1.26	2.73	0.52	1.03	6.05	6.86
12	448573	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
13	495573	Transcript	0	0.00	0.00	0.36	0.33	0.00	0.00
14	483502	Transcript	0	0.04	0.87	1.38	2.43	2.46	0.10
15	493965	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
16	477002	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
17	ER1a	ExonRegion	0	0.25	0.13	0.00	0.00	0.00	0.00
18	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
19	E1_Ac	KnownBoundary	0	3.56	2.87	0.00	0.00	0.00	0.00
20	ER1b	ExonRegion	0	2.11	2.08	0.00	0.00	0.00	0.00
21	ER1c	ExonRegion	0	1.04	2.51	0.00	0.43	0.00	0.00
22	E1_Ad	KnownBoundary	0	0.00	6.36	3.53	0.00	0.00	0.00
23	ER1d	ExonRegion	0	0.54	5.64	0.00	1.85	0.00	0.11
24	E1_Ae	KnownBoundary	0	0.00	6.30	0.00	0.00	0.00	0.00
25	ER1e	ExonRegion	0	2.11	3.21	0.00	2.15	1.76	1.85
26	E1_Da	KnownBoundary	0	6.99	5.85	6.94	3.37	5.16	5.21
27	E1a_E1f	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
28	ER1f	ExonRegion	0	0.79	0.00	1.39	3.64	1.19	1.07
29	E1_Af	KnownBoundary	0	3.56	0.00	10.30	13.21	0.00	0.00
30	ER1g	ExonRegion	0	2.11	4.01	7.66	5.08	0.00	0.00
31	E1b_E2a	KnownJunction	0	2.83	5.51	12.41	2.72	0.00	0.00
32	ER2a	ExonRegion	0	0.84	0.71	4.46	0.70	0.00	0.53
33	E2a_E3a	KnownJunction	0	3.56	0.00	10.08	2.61	0.00	5.21
34	ER3a	ExonRegion	0	2.11	0.00	10.86	5.63	0.00	1.85
35	ER3b	ExonRegion	0	0.43	0.76	7.95	4.13	0.00	1.09
36	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
37	ER4a	ExonRegion	0	4.05	0.14	12.04	2.87	0.00	0.00
38	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
39	ER5a	ExonRegion	0	5.90	2.22	36.69	12.32	1.13	2.07
40	E5a_E6a	KnownJunction	0	7.35	6.97	38.20	12.89	4.66	0.00
41	ER6a	ExonRegion	0	5.39	3.21	35.44	13.53	1.87	0.00
42	E6a_E7a	KnownJunction	0	10.85	3.32	29.26	6.31	0.00	0.00
43	ER7a	ExonRegion	0	5.04	4.80	20.65	4.01	8.59	1.95
44	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
45	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
46	ER8a	ExonRegion	0	0.00	0.00	1.42	0.00	0.00	3.65
47	E8_Da	KnownBoundary	0	25.85	8.55	19.30	3.21	8.49	73.71
48	ER8b	ExonRegion	0	0.19	0.38	0.72	0.29	0.08	0.68
49	ER9a	ExonRegion	0	4.05	2.25	11.43	5.30	5.90	0.54
50	E9a_E10a	KnownJunction	0	3.19	12.09	24.71	2.77	10.32	0.00
51	ER10a	ExonRegion	0	3.77	2.80	9.79	5.86	8.06	1.90
52	E10a_E11a	KnownJunction	0	0.00	10.46	13.49	3.37	13.65	0.00
53	E10a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
54	E11_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	9.57	8.23
55	ER11a	ExonRegion	0	1.62	1.56	1.69	2.30	5.34	0.04
56	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
57	ER12a	ExonRegion	0	2.66	0.00	1.54	0.14	2.65	0.00
58	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
59	E13_Ab	NovelBoundary	0	6.87	0.00	8.20	2.94	15.90	3.86
60	ER13a	ExonRegion	0	4.22	0.00	2.17	2.15	3.62	0.00
61	ER13b	ExonRegion	0	3.91	0.00	3.66	2.15	3.40	0.00
62	E13_Ac	KnownBoundary	0	2.59	3.21	3.24	3.37	4.08	3.61
63	ER13c	ExonRegion	0	6.41	0.80	7.62	2.83	1.81	0.00
64	E13_Da	NovelBoundary	0	3.43	0.00	8.99	3.37	0.00	0.00
65	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
66	E13a_E15a	KnownJunction	0	0.00	0.00	0.00	3.10	0.00	0.00
67	E13a_E15b	KnownJunction	0	9.16	2.98	13.09	3.21	0.00	0.00
68	E14_Aa	NovelBoundary	0	5.66	9.67	5.64	0.00	57.85	13.52
69	ER14a	ExonRegion	0	2.52	5.46	1.05	2.06	12.10	13.72
70	E14_Da	NovelBoundary	0	11.63	10.41	0.00	0.00	0.00	0.00
71	I14_AR1	ActiveIntronRegion	0	12.00	2.78	4.72	3.97	0.00	0.93
72	ER15a	ExonRegion	0	2.11	0.52	2.17	2.69	0.00	0.00
73	ER15b	ExonRegion	0	1.49	1.81	4.08	1.90	2.94	0.00
74	E15a_E16a	KnownJunction	0	0.00	3.49	6.66	3.15	0.00	0.00
75	E15a_E17b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
76	ER16a	ExonRegion	0	4.75	1.42	7.26	3.80	6.30	0.38
77	E16_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
78	E16a_E17b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
79	E16a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
80	ER16b	ExonRegion	0	2.81	0.00	2.11	0.93	8.22	2.86
81	ER17a	ExonRegion	0	0.00	0.00	1.45	0.00	0.00	0.00
82	ER17b	ExonRegion	0	1.26	0.00	10.25	3.87	0.30	0.00
83	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
84	E17a_E19a	KnownJunction	0	0.00	0.00	6.83	8.81	4.33	0.00
85	ER18a	ExonRegion	0	0.00	0.00	0.00	1.33	0.00	0.00
86	E18_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	8.48
87	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
88	E19_Ab	NovelBoundary	0	0.00	0.00	0.00	5.38	0.00	0.00
89	ER19a	ExonRegion	0	0.00	0.00	6.21	6.46	1.81	0.00
90	ER19b	ExonRegion	0	3.14	2.00	8.23	5.03	1.06	0.86
91	E19_Da	KnownBoundary	0	3.68	0.00	0.00	0.00	0.00	0.00
92	E19a_E20a	KnownJunction	0	12.41	0.00	8.37	5.93	5.16	0.00
93	E19_Db	KnownBoundary	0	0.00	3.32	0.00	0.00	0.00	8.82
94	E19b_E20a	KnownJunction	0	0.00	3.49	0.00	0.00	0.00	0.00
95	ER19c	ExonRegion	0	2.11	2.08	0.00	0.00	0.00	0.00
96	ER19d	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
97	ER19e	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
98	ER19f	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
99	ER20a	ExonRegion	0	2.60	1.10	5.90	7.31	1.42	0.00
100	E20a_E21a	KnownJunction	0	0.00	0.00	2.33	3.10	4.25	0.00
101	E20a_E21b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
102	E20a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
103	E21_Aa	NovelBoundary	0	0.00	0.00	2.85	0.00	12.40	0.00
104	ER21a	ExonRegion	0	0.14	0.00	1.59	6.61	2.05	0.00
105	ER21b	ExonRegion	0	0.56	0.00	3.86	6.69	5.55	0.43
106	E21_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
107	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	12.40	13.07	0.00
108	ER21c	ExonRegion	0	0.00	0.00	1.61	0.00	3.56	0.39
109	E21_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	28.13	9.74
110	ER22a	ExonRegion	0	0.00	0.51	5.81	5.08	4.09	0.00
111	E22_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
112	ER22b	ExonRegion	0	0.00	1.37	6.30	0.34	6.80	0.00
113	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
114	ER23a	ExonRegion	0	0.00	0.99	5.01	3.42	1.92	0.00
115	E23_Da	KnownBoundary	0	0.00	0.00	9.51	6.69	10.32	0.00
116	E23a_E23c	KnownJunction	0	0.00	2.42	5.58	0.00	5.16	0.00
117	E23_Db	KnownBoundary	0	0.00	0.00	2.39	3.37	0.00	0.00
118	ER23b	ExonRegion	0	0.00	0.00	3.04	4.31	3.62	0.00
119	ER23c	ExonRegion	0	0.46	0.00	10.37	2.99	3.22	0.26
120	E23_Ab	KnownBoundary	0	3.74	0.00	11.16	3.37	5.16	0.00
121	ER23d	ExonRegion	0	1.09	0.00	10.16	2.61	2.98	1.42
122	E23_Dc	KnownBoundary	0	2.77	0.00	9.17	0.00	4.74	0.00
123	E23c_E23c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
124	ER23e	ExonRegion	0	3.41	0.32	7.10	3.82	1.58	0.62
125	E23_Ac	KnownBoundary	0	0.00	5.29	16.22	2.77	3.91	0.00
126	ER23f	ExonRegion	0	5.02	3.08	9.11	1.68	5.74	0.00
127	E23_Dd	KnownBoundary	0	0.00	0.00	0.00	2.39	0.00	0.00
128	E23d_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
129	E23d_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
130	ER23g	ExonRegion	0	2.33	0.00	0.65	1.04	3.80	0.00
131	E23_De	NovelBoundary	0	0.00	0.00	0.00	0.00	24.72	4.37
132	ER24a	ExonRegion	0	0.43	2.94	0.00	0.00	0.54	0.00
133	E24_Da	KnownBoundary	0	2.47	0.00	5.64	0.00	0.00	0.00
134	ER24b	ExonRegion	0	0.00	1.12	0.00	0.00	1.07	0.00
135	E24b_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
136	ER25a	ExonRegion	0	0.00	0.38	0.00	0.00	0.00	0.00
137	E25_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
138	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
139	ER25b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
140	E25b_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
141	ER26a	ExonRegion	0	2.33	3.06	1.51	0.50	0.95	1.51
142	E26_Da	KnownBoundary	0	9.34	3.49	19.30	0.00	0.00	0.00
143	ER26b	ExonRegion	0	4.86	1.68	9.14	2.97	0.83	1.26
144	E26_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
145	ER26c	ExonRegion	0	2.67	0.35	3.09	1.27	7.38	2.56