Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	CUX1	Gene	0	52.07	53.79	22.58	23.40	38.60	34.68
2	497815	Transcript	0	3.22	1.78	4.58	0.63	8.31	10.08
3	292538	Transcript	0	0	0	0	0	0	0
4	419439	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
5	360264	Transcript	0	0	0	0	0	0	0
6	393824	Transcript	0	0	0	0	0	0	0
7	338990	Transcript	0	0	0	0	0	0	0
8	425244	Transcript	0	0	0	0	0	0	0
9	437600	Transcript	0	15.91	18.39	4.87	3.13	0.00	6.59
10	292535	Transcript	0	0.00	0.00	0.00	1.05	0.00	0.00
11	415720	Transcript	0	0	0	0	0	0	0
12	412016	Transcript	0	0	0	0	0	0	0
13	431850	Transcript	0	0	0	0	0	0	0
14	436903	Transcript	0	0	0	0	0	0	0
15	465461	Transcript	0	0.85	0.21	0.44	0.87	9.31	14.25
16	485792	Transcript	0	4.24	2.21	5.48	6.22	0.76	0.00
17	487284	Transcript	0	2.05	1.73	0.15	0.27	0.00	0.00
18	ER1a	ExonRegion	0	3.92	2.88	7.40	0.57	0.00	0.00
19	E1_Ab	KnownBoundary	0	0.00	10.18	0.00	0.00	0.00	0.00
20	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
21	E1_Ad	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
22	E1_Ae	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
23	E1_Af	KnownBoundary	0	13.38	11.19	26.07	8.05	0.00	0.00
24	ER1b	ExonRegion	1	10.56	10.39	26.07	6.46	0.00	0.00
25	ER1c	ExonRegion	1	10.56	10.39	26.07	6.46	0.00	0.00
26	ER1d	ExonRegion	1	10.56	10.39	26.07	6.46	0.00	0.00
27	ER1e	ExonRegion	0	17.47	16.62	37.33	12.73	0.66	0.00
28	ER1f	ExonRegion	0	38.25	54.79	80.04	37.79	10.64	3.31
29	E1a_E3a	KnownJunction	0	33.56	78.41	56.01	30.83	30.46	15.11
30	E2_Aa	NovelBoundary	1	0.00	27.28	0.00	0.00	0.00	0.00
31	ER2a	ExonRegion	0	0.00	0.00	0.00	1.05	0.00	0.00
32	E2a_E3a	KnownJunction	0	0.00	2.92	0.00	6.47	0.00	0.00
33	ER2b	ExonRegion	0	0.22	1.50	0.00	4.31	0.00	0.00
34	I2_AR4	ActiveIntronRegion	0	5.99	3.13	10.23	3.01	0.00	0.00
35	I2_SR4	SilentIntronRegion	0	4.75	4.48	10.59	5.72	0.00	0.00
36	I2_AR5	ActiveIntronRegion	0	4.76	1.07	11.10	14.24	0.00	0.00
37	I2_SR5	SilentIntronRegion	0	7.57	2.62	5.57	7.62	0.91	1.21
38	I2_AR8	ActiveIntronRegion	0	2.11	1.09	10.52	8.28	0.00	0.00
39	I2_AR9	ActiveIntronRegion	0	2.11	2.08	15.35	13.79	0.00	0.00
40	I2_AR10	ActiveIntronRegion	0	2.99	2.08	15.21	17.23	0.00	0.00
41	I2_AR11	ActiveIntronRegion	0	4.68	5.25	3.66	6.61	0.84	0.00
42	I2_AR12	ActiveIntronRegion	0	5.36	3.69	3.77	5.29	0.00	0.00
43	I2_AR14	ActiveIntronRegion	0	11.15	5.25	2.00	0.99	8.71	20.41
44	I2_AR15	ActiveIntronRegion	0	19.57	20.05	5.92	11.06	0.00	0.36
45	I2_AR21	ActiveIntronRegion	0	4.53	4.39	4.01	8.55	15.28	15.77
46	I2_AR24	ActiveIntronRegion	0	3.46	0.52	2.19	1.08	5.63	10.41
47	I2_AR28	ActiveIntronRegion	1	2.76	0.00	1.71	1.83	21.51	69.00
48	ER3a	ExonRegion	0	43.12	64.78	75.41	43.16	13.94	4.55
49	E3_Da	NovelBoundary	0	0.00	2.42	3.30	6.74	40.04	8.98
50	E3a_E4a	KnownJunction	0	47.18	89.37	81.92	48.83	12.24	9.74
51	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
52	I3_AR1	ActiveIntronRegion	0	4.29	2.13	2.18	2.16	40.02	20.66
53	I3_AR8	ActiveIntronRegion	0	0.00	0.00	10.26	4.27	0.00	3.38
54	I3_AR9	ActiveIntronRegion	0	4.61	12.18	1.22	1.10	0.00	2.25
55	I3_AR10	ActiveIntronRegion	0	2.11	3.50	0.82	0.00	2.87	7.46
56	I3_AR12	ActiveIntronRegion	0	2.21	1.43	3.55	1.69	6.45	10.51
57	I3_SR8	SilentIntronRegion	0	4.41	1.22	6.59	7.13	1.73	1.35
58	I3_AR18	ActiveIntronRegion	1	6.33	2.08	1.98	10.58	0.00	0.00
59	I3_AR19	ActiveIntronRegion	1	6.33	2.08	2.17	13.10	0.00	0.00
60	I3_AR20	ActiveIntronRegion	1	6.33	2.08	2.17	15.08	0.00	0.00
61	I3_AR21	ActiveIntronRegion	0	8.50	7.10	6.16	7.24	1.40	0.00
62	I3_AR22	ActiveIntronRegion	0	4.92	2.91	2.03	7.37	1.12	1.73
63	I3_AR23	ActiveIntronRegion	0	29.62	27.02	6.93	7.42	38.50	47.88
64	I3_SR16	SilentIntronRegion	0	4.13	0.53	0.32	0.00	4.35	8.21
65	I3_AR28	ActiveIntronRegion	0	7.83	3.85	2.68	4.44	26.06	45.75
66	I3_AR31	ActiveIntronRegion	0	4.88	3.27	7.67	4.96	9.61	4.34
67	I3_AR32	ActiveIntronRegion	0	10.90	12.91	4.45	2.31	55.83	58.92
68	I3_AR34	ActiveIntronRegion	0	6.33	0.00	10.86	6.46	5.98	7.40
69	ER4a	ExonRegion	0	66.42	93.49	88.62	62.92	7.19	2.24
70	E4a_E5a	KnownJunction	0	103.82	106.19	78.16	62.04	18.06	0.00
71	ER5a	ExonRegion	0	87.18	96.01	131.45	81.67	15.40	5.06
72	E5a_E6a	KnownJunction	0	86.71	96.57	128.14	81.72	22.31	10.41
73	ER6a	ExonRegion	0	82.28	83.85	120.92	122.65	10.57	9.66
74	E6a_E7a	KnownJunction	1	145.34	126.10	148.69	172.80	11.49	55.41
75	ER7a	ExonRegion	0	116.77	83.08	143.51	140.89	9.59	24.14
76	E7a_E8a	KnownJunction	0	116.84	120.42	113.22	104.72	29.05	17.97
77	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
78	ER7b	ExonRegion	0	99.04	90.28	102.90	114.66	13.23	8.67
79	ER8a	ExonRegion	0	114.78	117.85	119.15	125.98	21.32	19.62
80	E8_Da	KnownBoundary	0	3.25	0.00	10.59	0.00	39.37	9.57
81	E8a_E9a	KnownJunction	0	102.62	112.83	102.35	112.44	17.90	45.92
82	ER8b	ExonRegion	0	2.51	0.67	1.76	0.69	16.62	20.15
83	E8_Db	NovelBoundary	0	6.87	0.00	9.68	8.81	7.41	9.74
84	I8_AR1	ActiveIntronRegion	0	1.71	0.00	0.00	0.00	21.93	22.45
85	E9_Aa	NovelBoundary	0	2.89	0.00	9.34	6.20	0.00	0.00
86	ER9a	ExonRegion	0	98.95	137.24	101.33	125.65	9.55	12.77
87	E9_Da	KnownBoundary	0	3.68	5.85	12.07	9.24	10.32	0.00
88	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	5.21
89	E9a_E11a	KnownJunction	0	132.50	154.67	69.22	88.79	9.57	20.65
90	ER9b	ExonRegion	0	4.24	2.21	5.48	6.22	0.76	0.00
91	I9_AR8	ActiveIntronRegion	0	10.56	2.08	0.00	4.31	8.64	0.00
92	I9_SR1	SilentIntronRegion	0	10.56	2.08	0.00	4.31	5.42	0.00
93	I9_AR9	ActiveIntronRegion	0	10.56	2.08	0.00	4.31	5.42	0.00
94	I9_AR10	ActiveIntronRegion	0	10.56	2.08	0.00	4.31	4.42	0.00
95	I9_AR13	ActiveIntronRegion	0	11.13	4.65	5.72	1.57	0.00	0.93
96	I9_AR14	ActiveIntronRegion	0	5.35	3.53	2.77	2.29	29.82	28.59
97	E10_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	101.55	237.60
98	ER10a	ExonRegion	0	2.56	0.63	1.32	2.61	27.93	37.56
99	I10_AR3	ActiveIntronRegion	0	11.49	1.27	5.26	1.27	7.09	0.00
100	I10_AR4	ActiveIntronRegion	1	11.08	0.00	12.63	0.00	14.46	0.00
101	I10_AR5	ActiveIntronRegion	1	8.45	0.00	13.04	1.44	13.26	0.00
102	I10_AR6	ActiveIntronRegion	1	6.33	0.00	11.95	2.15	14.46	0.00
103	I10_AR7	ActiveIntronRegion	1	6.94	0.00	10.63	2.15	15.63	0.00
104	I10_AR8	ActiveIntronRegion	0	3.93	0.00	4.35	6.02	6.61	0.06
105	I10_AR11	ActiveIntronRegion	1	11.51	7.39	4.76	9.97	4.40	17.58
106	ER11a	ExonRegion	0	108.67	136.31	57.50	63.31	7.20	10.43
107	E11a_E12a	KnownJunction	0	98.64	144.38	43.78	34.31	20.23	14.44
108	I11_AR1	ActiveIntronRegion	1	9.63	2.37	1.65	3.27	5.49	18.98
109	I11_AR4	ActiveIntronRegion	0	8.53	4.41	7.69	7.72	8.74	1.43
110	I11_SR3	SilentIntronRegion	0	7.84	8.31	6.52	7.39	12.66	1.85
111	I11_AR5	ActiveIntronRegion	0	5.70	9.97	6.30	10.34	11.48	1.48
112	I11_AR6	ActiveIntronRegion	0	6.14	10.39	4.54	7.05	8.05	0.00
113	I11_AR7	ActiveIntronRegion	0	9.88	14.77	1.00	3.06	9.99	2.34
114	ER12a	ExonRegion	0	88.52	139.14	52.04	63.19	6.58	15.02
115	E12a_E13a	KnownJunction	1	48.45	89.82	29.43	29.31	0.00	40.47
116	E12a_E13b	KnownJunction	0	27.60	34.70	9.73	6.25	0.00	13.18
117	ER13a	ExonRegion	1	60.02	82.51	41.28	32.31	1.81	18.78
118	ER13b	ExonRegion	1	77.02	136.07	38.16	31.24	2.12	18.10
119	E13a_E14a	KnownJunction	0	104.30	154.90	68.37	38.28	9.16	0.00
120	ER14a	ExonRegion	0	84.74	132.82	42.75	38.59	0.52	0.85
121	E14a_E15a	KnownJunction	0	100.75	156.70	44.46	40.29	0.00	4.45
122	ER15a	ExonRegion	0	74.80	129.66	38.66	31.48	0.00	1.85
123	E15a_E16a	KnownJunction	0	84.54	100.29	26.41	17.34	0.00	0.00
124	ER16a	ExonRegion	0	95.58	89.10	28.38	29.32	0.50	0.02
125	E16a_E17a	KnownJunction	0	6.93	18.11	15.83	14.25	0.00	0.00
126	E16a_E17b	KnownJunction	0	3.13	5.40	0.00	0.00	0.00	0.00
127	E16a_E27a	KnownJunction	0	43.75	95.90	10.30	2.99	4.83	0.00
128	ER17a	ExonRegion	0	20.36	22.91	31.16	29.35	0.00	0.00
129	E17_Ab	KnownBoundary	0	40.55	56.53	65.46	49.37	0.00	0.00
130	ER17b	ExonRegion	0	30.61	32.44	26.65	35.68	0.00	0.00
131	E17a_E18a	KnownJunction	0	31.09	32.79	21.01	36.54	0.00	0.00
132	E17a_E19a	KnownJunction	0	0.00	0.00	0.00	2.72	0.00	0.00
133	E17a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
134	ER18a	ExonRegion	1	25.62	29.02	8.69	26.05	0.00	0.00
135	E18a_E19a	KnownJunction	0	23.44	36.95	5.75	18.92	0.00	0.00
136	ER19a	ExonRegion	0	33.06	38.62	27.86	31.38	0.00	0.00
137	E19a_E20a	KnownJunction	0	42.48	41.73	17.08	26.53	0.00	0.00
138	ER20a	ExonRegion	0	23.23	36.57	11.52	15.67	0.33	0.00
139	E20a_E21a	KnownJunction	0	54.35	79.59	32.73	22.24	0.00	0.00
140	ER21a	ExonRegion	0	45.61	49.75	17.37	25.09	0.83	0.00
141	E21a_E22a	KnownJunction	0	68.81	47.58	30.46	23.11	0.00	0.00
142	ER22a	ExonRegion	0	50.60	47.71	20.31	33.60	0.00	0.00
143	E22a_E23a	KnownJunction	0	45.85	52.48	18.79	34.42	0.00	0.00
144	ER23a	ExonRegion	0	34.88	42.80	26.11	34.06	1.38	0.00
145	E23a_E24a	KnownJunction	0	61.10	38.87	3.30	13.00	0.00	0.00
146	ER24a	ExonRegion	0	39.87	37.10	15.55	27.56	3.98	1.28
147	E24a_E25a	KnownJunction	0	66.16	66.09	41.21	58.29	13.07	4.11
148	ER25a	ExonRegion	0	28.47	43.49	17.40	27.09	2.05	1.98
149	E25a_E26a	KnownJunction	0	21.39	32.62	9.39	14.03	8.16	5.21
150	ER26a	ExonRegion	0	7.59	8.69	1.56	2.21	1.47	0.57
151	E26_Da	KnownBoundary	0	2.83	2.64	0.00	0.00	4.66	0.00
152	ER26b	ExonRegion	0	46.97	44.11	20.25	20.47	62.66	55.71
153	ER27a	ExonRegion	0	73.39	77.37	8.05	8.10	0.69	0.00
154	E27a_E28b	KnownJunction	0	164.62	138.14	18.56	25.83	0.00	0.00
155	ER28a	ExonRegion	0	2.05	1.73	0.15	0.27	0.00	0.00
156	E28_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
157	ER28b	ExonRegion	0	131.83	113.42	11.69	15.37	0.27	0.00
158	E28a_E29a	KnownJunction	0	79.78	92.41	11.90	5.87	0.00	0.00
159	ER29a	ExonRegion	0	81.63	78.74	11.90	13.82	2.56	0.00
160	E29a_E30a	KnownJunction	0	119.55	129.76	21.23	14.63	4.08	0.00
161	ER30a	ExonRegion	0	97.61	106.90	12.52	19.15	4.13	0.00
162	E30a_E31a	KnownJunction	0	101.29	125.71	12.64	26.26	4.16	0.00
163	ER31a	ExonRegion	0	128.26	114.66	10.78	15.95	0.41	1.10
164	E31a_E32a	KnownJunction	0	124.31	156.36	9.05	14.90	0.00	4.87
165	ER32a	ExonRegion	0	133.83	143.24	10.94	23.05	0.00	2.73
166	E32a_E33a	KnownJunction	0	184.26	178.47	26.53	41.32	0.00	4.11
167	ER33a	ExonRegion	0	189.39	201.52	30.63	26.12	0.92	0.57
168	E33a_E34a	KnownJunction	0	245.36	255.58	33.93	8.32	5.16	0.00
169	ER34a	ExonRegion	0	213.18	230.10	28.58	36.52	3.45	3.02
170	E34a_E35a	KnownJunction	0	211.02	209.18	20.55	37.35	13.48	10.24
171	ER35a	ExonRegion	0	161.53	169.16	19.26	21.02	36.04	32.09
172	ER35b	ExonRegion	0	41.64	40.06	18.86	10.94	64.15	53.39
173	ER35c	ExonRegion	0	4.22	2.08	0.00	0.00	0.00	0.00
174	IG42_AR1	ActiveIntergenicRegion	0	0.00	6.23	0.00	0.00	0.00	0.00