Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	CCDC39	Gene	0	4.75	0.80	6.52	2.23	3.95	1.06
2	495817	Transcript	0	0.00	0.00	0.00	0.54	0.00	0.00
3	471307	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
4	485055	Transcript	0	0.00	0.00	0.00	0.08	0.00	0.00
5	273654	Transcript	0	0	0	0	0	0	0
6	476379	Transcript	0	0.00	0.00	4.35	0.00	0.00	0.00
7	442201	Transcript	0	4.66	0.00	7.21	2.10	3.61	0.01
8	473854	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
9	489868	Transcript	0	2.23	2.64	1.18	0.00	2.54	0.80
10	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
11	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
12	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
13	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
14	E1a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
15	ER2a	ExonRegion	0	0.06	0.00	0.00	0.00	0.00	0.00
16	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
17	ER3a	ExonRegion	0	1.29	0.00	0.00	0.00	0.00	0.00
18	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
19	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
20	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
21	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
22	ER5a	ExonRegion	0	0.00	0.00	0.00	0.15	0.00	0.00
23	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
24	E5a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
25	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
26	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
27	E6a_E7b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
28	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
29	ER7b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
30	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
31	E7a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
32	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
33	E8a_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
34	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
35	E9_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
36	ER9b	ExonRegion	0	0.00	0.00	0.00	0.52	0.00	0.44
37	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
38	E9a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
39	ER10a	ExonRegion	0	0.00	0.00	0.00	1.35	0.00	0.00
40	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
41	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
42	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
43	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
44	E12a_E13b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
45	ER13a	ExonRegion	0	0.00	0.00	0.00	2.15	0.00	0.00
46	ER13b	ExonRegion	0	0.00	0.00	0.00	1.32	0.00	0.00
47	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
48	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
49	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
50	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
51	E15_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
52	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
53	ER15b	ExonRegion	0	0.00	0.00	0.00	0.37	0.00	0.00
54	E15_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
55	ER15c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
56	ER16a	ExonRegion	0	0.00	0.00	4.30	0.00	1.43	0.00
57	E16a_E17b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
58	ER17a	ExonRegion	0	0.00	0.00	3.21	0.00	0.00	0.00
59	E17_Ab	KnownBoundary	0	0.00	0.00	3.07	0.00	0.00	0.00
60	ER17b	ExonRegion	0	0.00	0.55	4.18	0.00	0.00	0.00
61	E17a_E18a	KnownJunction	0	0.00	0.00	3.42	0.00	0.00	0.00
62	ER18a	ExonRegion	0	5.33	4.85	1.94	1.36	0.00	0.00
63	E18a_E19a	KnownJunction	0	0.00	0.00	9.45	0.00	0.00	0.00
64	ER19a	ExonRegion	0	7.31	4.64	8.02	3.93	0.00	0.00
65	E19b_E20a	KnownJunction	0	3.01	0.00	12.18	5.65	0.00	0.00
66	ER19b	ExonRegion	0	6.33	0.00	8.69	4.31	0.00	0.00
67	ER20a	ExonRegion	0	3.35	0.00	13.04	2.32	0.22	0.00
68	E20a_E21a	KnownJunction	0	0.00	0.00	9.62	5.38	4.16	0.00
69	ER21a	ExonRegion	0	5.29	1.70	11.40	2.11	1.11	0.00
70	E21a_E22a	KnownJunction	0	0.00	0.00	8.88	0.00	0.00	0.00
71	ER22a	ExonRegion	0	4.03	1.84	11.32	1.27	1.07	1.84
72	E22a_E23a	KnownJunction	0	3.49	5.62	9.11	0.00	0.00	4.62
73	ER23a	ExonRegion	0	1.58	2.06	5.79	0.00	0.00	1.70
74	E23a_E24a	KnownJunction	0	0.00	0.00	2.79	0.00	0.00	0.00
75	ER24a	ExonRegion	0	1.34	0.00	2.32	0.00	0.00	0.00
76	E24a_E25a	KnownJunction	0	3.49	0.00	5.86	0.00	0.00	0.00
77	ER25a	ExonRegion	0	3.62	0.22	4.52	0.26	2.07	0.00
78	E25a_E26a	KnownJunction	0	0.00	2.53	0.00	2.56	0.00	0.00
79	ER26a	ExonRegion	0	1.65	2.26	4.35	2.86	1.41	1.11
80	E26a_E27a	KnownJunction	0	0.00	0.00	0.00	3.21	0.00	5.21
81	ER27a	ExonRegion	0	2.10	2.90	1.58	1.37	0.50	3.53
82	E27a_E28a	KnownJunction	0	2.59	0.00	8.37	0.00	8.99	8.06
83	ER28a	ExonRegion	0	7.01	3.43	24.31	2.89	2.69	3.47
84	E28a_E29a	KnownJunction	0	6.51	0.00	43.89	3.15	9.57	0.00
85	ER29a	ExonRegion	0	7.41	0.00	22.30	8.19	5.47	2.41
86	E29a_E30a	KnownJunction	0	17.05	0.00	2.39	0.00	4.99	4.70
87	ER30a	ExonRegion	0	2.98	0.00	4.59	1.84	3.28	1.43
88	E30a_E31a	KnownJunction	0	2.53	0.00	3.53	2.88	4.83	0.00
89	E30a_E32a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
90	ER31a	ExonRegion	0	5.30	0.00	6.44	2.28	0.96	0.06
91	E31a_E32a	KnownJunction	0	10.79	0.00	15.65	3.26	8.66	0.00
92	ER32a	ExonRegion	0	5.54	0.00	7.41	2.96	4.75	0.22
93	E32a_E33a	KnownJunction	0	11.09	0.00	5.75	3.37	4.58	0.00
94	Ix	Intron	0	28.24	3.79	0.00	0.00	26.40	11.24
95	Ix_AR1	ActiveIntronRegion	0	28.47	3.82	0.00	0.00	26.61	11.33
96	E33_Aa	NovelBoundary	0	51.82	10.12	3.53	0.00	87.65	13.43
97	ER33a	ExonRegion	0	28.53	2.24	20.31	5.78	45.79	6.87
98	E33_Da	NovelBoundary	0	55.38	13.05	7.06	10.11	81.90	5.21
99	E33a_E34a	KnownJunction	0	10.00	0.00	0.00	3.32	8.74	0.00
100	Ix	Intron	0	14.81	6.07	8.89	1.26	12.68	4.33
101	Ix_AR1	ActiveIntronRegion	0	15.04	6.17	9.01	1.28	12.88	4.40
102	E34_Aa	NovelBoundary	0	48.45	12.77	18.56	8.43	75.08	0.00
103	ER34a	ExonRegion	0	35.70	2.50	13.97	7.34	17.63	2.86
104	E34_Ab	KnownBoundary	0	65.02	3.49	19.81	9.13	43.53	5.04
105	ER34b	ExonRegion	0	50.31	6.11	22.10	7.57	29.75	6.88
106	E34_Ac	KnownBoundary	0	39.17	6.75	16.17	6.31	49.86	15.28
107	ER34c	ExonRegion	0	30.71	3.04	16.71	7.23	21.82	3.50
108	E34_Da	NovelBoundary	0	32.84	0.00	2.96	0.00	19.98	0.00
109	E34a_E35a	KnownJunction	0	6.27	0.00	12.75	5.87	4.83	0.00
110	Ix	Intron	0	12.67	4.16	2.17	3.23	9.02	6.48
111	Ix_AR1	ActiveIntronRegion	0	12.84	4.21	2.20	3.27	9.11	6.57
112	E35_Aa	NovelBoundary	0	16.75	17.10	12.41	6.14	32.71	20.49
113	ER35a	ExonRegion	0	20.94	1.50	7.30	5.22	7.95	6.45
114	E35_Da	NovelBoundary	0	16.45	11.98	2.50	2.23	14.32	3.44
115	E35a_E36a	KnownJunction	0	21.09	0.00	3.53	0.00	4.08	0.00
116	E35a_E37a	KnownJunction	0	3.19	6.86	3.53	0.00	0.00	0.00
117	Ix	Intron	0	9.48	2.27	30.38	14.79	3.59	8.66
118	Ix_AR1	ActiveIntronRegion	0	9.49	2.27	30.43	14.81	3.60	8.68
119	E36_Aa	NovelBoundary	0	16.39	5.51	18.16	17.40	26.30	12.43
120	ER36a	ExonRegion	0	14.47	0.71	21.46	10.82	13.23	3.16
121	E36_Da	KnownBoundary	0	23.74	0.00	38.94	14.57	43.62	3.78
122	E36a_E37a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
123	ER36b	ExonRegion	0	13.55	2.18	30.29	10.24	11.07	2.82
124	E36_Db	KnownBoundary	0	27.48	0.00	13.55	6.20	10.07	0.00
125	ER36c	ExonRegion	0	14.07	0.27	14.47	6.21	14.90	1.94
126	E36_Dc	NovelBoundary	0	7.11	3.15	8.14	9.84	10.15	3.69
127	ER36d	ExonRegion	0	0.00	0.00	4.35	0.00	0.00	0.00
128	Ix	Intron	0	6.73	2.21	15.01	9.16	4.80	0.98
129	Ix_SR1	SilentIntronRegion	0	6.88	2.24	15.33	9.36	4.91	1.00
130	E37_Aa	NovelBoundary	0	17.35	6.97	75.65	44.10	28.38	19.73
131	ER37a	ExonRegion	0	3.02	3.75	1.70	0.00	0.39	0.00
132	E37_Da	NovelBoundary	0	14.82	3.43	41.67	32.13	3.75	75.56
133	E37a_E38a	KnownJunction	0	3.31	0.00	0.00	0.00	3.50	0.00
134	E37a_E39a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
135	Ix	Intron	0	3.01	1.31	25.24	11.39	1.29	6.13
136	Ix_SR3	SilentIntronRegion	0	3.49	0.78	23.10	12.16	1.46	7.41
137	Ix_AR2	ActiveIntronRegion	0	2.70	2.17	24.89	10.49	0.56	4.07
138	Ix_SR2	SilentIntronRegion	0	2.11	5.43	39.87	14.02	0.98	7.02
139	Ix_SR1	SilentIntronRegion	0	1.81	0.75	46.93	14.37	2.43	5.80
140	E38_Aa	NovelBoundary	0	158.96	69.07	79.41	109.83	987.26	427.76
141	ER38a	ExonRegion	0	0.17	1.06	0.00	0.00	4.13	2.39
142	E38_Da	NovelBoundary	0	150.10	21.99	290.04	194.71	272.10	102.85
143	E39_Aa	NovelBoundary	0	9.52	2.59	138.73	109.29	0.00	4.62
144	ER39a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00