Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	FHIT	Gene	0	9.59	7.69	4.25	3.67	12.75	9.83
2	468189	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
3	492590	Transcript	1	56.53	19.83	4.19	5.50	22.38	21.49
4	488467	Transcript	0	0.00	0.00	0.00	0.04	0.00	0.00
5	476844	Transcript	0	58.51	43.25	3.36	3.37	51.61	9.74
6	465330	Transcript	0	1.14	0.56	0.00	0.00	0.00	0.00
7	490952	Transcript	0	0.23	0.05	1.04	1.29	5.73	4.17
8	341848	Transcript	0	0	0	0	0	0	0
9	466788	Transcript	0	0.77	0.37	0.35	0.34	0.66	0.74
10	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
11	ER1b	ExonRegion	0	6.05	4.66	7.05	0.00	0.00	0.15
12	E1_Ac	KnownBoundary	0	0.00	5.85	0.00	0.00	0.00	0.00
13	E1_Ad	KnownBoundary	0	3.56	0.00	0.00	0.00	0.00	0.00
14	E1_Ae	KnownBoundary	0	33.38	16.42	26.58	0.00	14.15	5.21
15	ER1c	ExonRegion	0	16.89	10.39	15.21	0.00	3.62	1.85
16	ER1d	ExonRegion	0	18.55	13.36	20.25	0.38	3.62	1.85
17	ER1e	ExonRegion	0	15.11	17.17	15.68	5.22	11.28	0.98
18	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
19	E1a_E3a	KnownJunction	0	5.78	12.82	2.79	7.78	24.47	0.00
20	ER2a	ExonRegion	0	2.28	1.12	0.00	0.00	0.00	0.00
21	ER3a	ExonRegion	0	4.52	17.09	8.69	4.22	6.42	0.72
22	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	2.28	0.00	0.00
23	E3a_E6a	KnownJunction	0	6.33	19.80	16.22	0.00	8.99	8.56
24	ER4a	ExonRegion	0	0.00	0.00	2.08	2.00	0.00	0.00
25	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
26	ER5a	ExonRegion	0	0.63	0.00	0.08	0.00	1.62	1.66
27	E5_Da	NovelBoundary	0	1064.30	669.88	347.07	222.82	2680.93	1867.28
28	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
29	I5_AR3	ActiveIntronRegion	0	0.36	0.81	1.70	2.11	7.96	16.97
30	ER6a	ExonRegion	0	25.06	28.42	24.14	5.77	7.33	5.45
31	E6a_E7a	KnownJunction	0	46.22	33.47	35.58	9.95	15.15	9.57
32	ER7a	ExonRegion	0	40.86	35.50	20.98	14.78	18.86	9.48
33	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
34	E7a_E9a	KnownJunction	0	48.45	43.20	12.01	31.86	21.56	22.67
35	ER8a	ExonRegion	0	0.00	0.00	0.00	0.11	0.00	0.00
36	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
37	I8_AR1	ActiveIntronRegion	0	0.44	0.00	0.46	1.46	10.28	4.29
38	E9_Ab	NovelBoundary	1	11.57	43.31	14.06	23.16	12.49	4.20
39	ER9a	ExonRegion	0	32.02	36.01	12.43	27.41	13.06	11.00
40	ER9b	ExonRegion	0	21.05	33.53	19.74	22.24	15.21	5.64
41	E9_Da	KnownBoundary	0	3.74	0.00	2.85	8.86	17.73	14.69
42	E9a_E12a	KnownJunction	0	42.00	30.15	14.80	14.41	14.82	4.28
43	ER9c	ExonRegion	0	0.76	0.30	4.09	3.48	32.76	23.33
44	I9_AR6	ActiveIntronRegion	0	1.26	0.00	9.31	1.98	5.25	6.00
45	I9_AR7	ActiveIntronRegion	0	1.45	0.00	1.42	2.90	6.52	7.50
46	I9_AR11	ActiveIntronRegion	0	2.11	0.00	1.65	0.26	16.20	4.96
47	I9_AR12	ActiveIntronRegion	0	0.15	0.00	3.30	3.94	12.40	2.60
48	I9_AR13	ActiveIntronRegion	0	4.73	4.20	2.17	3.44	69.98	52.31
49	I9_AR14	ActiveIntronRegion	0	7.61	3.00	5.95	6.21	0.00	0.00
50	I9_SR8	SilentIntronRegion	0	5.30	0.00	1.22	2.39	17.61	4.37
51	I9_AR16	ActiveIntronRegion	0	7.35	5.78	1.89	1.12	26.73	19.00
52	I9_AR17	ActiveIntronRegion	0	12.90	16.05	1.95	2.32	50.35	35.90
53	I9_AR23	ActiveIntronRegion	0	2.76	1.97	5.65	2.91	25.99	28.57
54	I9_AR24	ActiveIntronRegion	0	1.25	1.96	4.70	7.29	1.28	1.72
55	I9_AR25	ActiveIntronRegion	0	2.60	0.00	2.64	6.58	0.00	2.25
56	I9_AR28	ActiveIntronRegion	0	12.94	9.63	1.21	1.11	69.88	68.62
57	I9_AR29	ActiveIntronRegion	0	29.17	25.15	0.53	0.00	10.95	9.53
58	I9_AR32	ActiveIntronRegion	0	0.48	0.00	4.22	3.08	5.43	39.36
59	I9_AR35	ActiveIntronRegion	0	5.23	2.23	0.93	0.00	20.84	19.93
60	I9_AR38	ActiveIntronRegion	0	1.36	1.08	3.26	0.00	12.47	7.25
61	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
62	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
63	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
64	E11a_E12b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
65	I11_AR7	ActiveIntronRegion	0	0.00	0.00	1.81	5.81	1.20	0.00
66	ER12a	ExonRegion	0	41.06	30.68	9.66	20.38	20.88	5.89
67	E12_Ab	KnownBoundary	0	35.13	35.77	9.62	17.07	68.67	8.98
68	ER12b	ExonRegion	0	34.40	33.88	16.08	17.35	21.47	4.54
69	E12b_E13a	KnownJunction	0	31.03	34.98	5.69	11.31	19.64	4.79
70	ER12c	ExonRegion	0	41.58	32.60	12.20	12.26	10.43	9.54
71	E13a_E14a	KnownJunction	0	80.26	27.39	6.20	5.82	48.03	31.74
72	ER13a	ExonRegion	0	57.92	34.97	7.82	8.90	18.86	11.42
73	I13_AR8	ActiveIntronRegion	0	0.00	0.49	0.51	0.00	11.42	6.93
74	ER14a	ExonRegion	0	66.12	34.08	9.89	7.27	31.68	21.76
75	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
76	E14a_E16a	KnownJunction	0	56.28	32.85	6.55	5.82	66.59	37.70
77	I14_AR5	ActiveIntronRegion	0	0.00	0.00	2.17	6.88	1.81	0.00
78	ER15a	ExonRegion	0	0.00	0.09	0.00	0.00	0.05	0.00
79	E15_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	17.56	5.21
80	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
81	I15_AR1	ActiveIntronRegion	0	0.98	0.00	4.78	2.54	9.17	12.10
82	I15_AR2	ActiveIntronRegion	0	1.00	0.00	1.03	1.02	16.57	40.97
83	I15_AR9	ActiveIntronRegion	0	5.65	0.50	4.00	1.15	10.83	7.16
84	ER16a	ExonRegion	0	62.46	50.27	5.30	7.97	33.52	16.85
85	E16_Da	KnownBoundary	1	0.00	12.60	3.13	0.00	0.00	0.00
86	E16_Db	KnownBoundary	0	10.67	0.00	2.62	2.72	0.00	0.00
87	E16b_E17a	KnownJunction	0	63.09	21.49	5.12	6.14	29.55	29.72
88	E16b_E17b	KnownJunction	0	58.51	43.25	3.36	3.37	51.61	9.74
89	ER16b	ExonRegion	0	93.32	61.91	10.86	10.77	40.14	17.40
90	ER16c	ExonRegion	0	2.49	3.87	1.50	1.76	0.00	0.00
91	E16_Dc	KnownBoundary	0	3.13	0.00	3.24	0.00	0.00	4.53
92	ER16d	ExonRegion	0	6.15	2.89	2.78	2.69	5.24	5.94
93	E16_Dd	NovelBoundary	0	27.36	6.19	0.00	0.00	4.74	15.53
94	E17_Aa	NovelBoundary	0	7.23	16.82	5.64	0.00	9.82	18.97
95	E17_Ab	NovelBoundary	1	76.22	9.90	12.41	5.76	23.56	20.07
96	ER17a	ExonRegion	1	49.97	18.18	3.26	4.85	15.22	13.27
97	ER17b	ExonRegion	0	35.93	31.53	5.21	2.80	42.70	45.48