Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	THRB	Gene	0	100.96	28.05	82.24	28.32	289.10	60.11
2	447414	Transcript	0	0.00	0.00	6.11	0.00	4.64	0.00
3	413780	Transcript	0	1.25	0.00	5.84	0.00	7.85	3.13
4	453729	Transcript	0	0.00	0.00	2.72	1.68	0.00	0.00
5	356447	Transcript	0	0	0	0	0	0	0
6	416420	Transcript	0	0.00	0.00	0.00	2.50	0.00	0.00
7	418247	Transcript	0	0	0	0	0	0	0
8	431815	Transcript	0	0	0	0	0	0	0
9	396671	Transcript	0	0	0	0	0	0	0
10	428492	Transcript	0	0	0	0	0	0	0
11	447875	Transcript	0	0.00	0.00	0.72	0.00	0.00	0.00
12	415021	Transcript	0	0	0	0	0	0	0
13	416811	Transcript	0	2.82	5.19	22.81	9.34	0.90	0.00
14	456926	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
15	280696	Transcript	0	0.85	0.55	3.19	0.72	0.00	0.00
16	ER1a	ExonRegion	0	0.00	0.00	3.50	0.00	1.05	0.00
17	E1a_E5a	KnownJunction	0	0.00	0.00	8.71	0.00	8.24	0.00
18	ER2a	ExonRegion	0	0.00	0.00	1.53	0.00	0.00	0.00
19	E2_Ab	KnownBoundary	0	0.00	0.00	6.26	0.00	0.00	0.00
20	ER2b	ExonRegion	0	0.11	0.00	3.88	0.00	0.34	1.06
21	E2a_E4a	KnownJunction	0	0.00	0.00	3.02	0.00	0.00	0.00
22	E2a_E5a	KnownJunction	0	3.74	0.00	16.00	0.00	23.56	9.40
23	ER2c	ExonRegion	1	3.07	0.00	23.11	0.00	7.89	6.73
24	ER2d	ExonRegion	1	4.22	0.00	36.12	0.00	9.04	7.40
25	E2_Ag	KnownBoundary	0	3.25	0.00	10.30	0.00	5.16	0.00
26	E2_Ah	KnownBoundary	0	3.37	0.00	0.00	0.00	5.08	0.00
27	ER2e	ExonRegion	1	4.22	0.00	38.74	0.00	10.55	7.40
28	ER2f	ExonRegion	1	6.33	0.00	36.93	0.00	10.85	7.40
29	ER2g	ExonRegion	1	4.86	0.00	24.11	2.05	3.62	0.00
30	E2_Ai	KnownBoundary	0	3.62	0.00	20.04	6.63	0.00	0.00
31	ER2h	ExonRegion	0	6.33	0.00	30.42	4.31	3.62	0.00
32	ER2i	ExonRegion	0	6.76	0.00	30.42	4.31	3.62	0.00
33	E2_Aj	KnownBoundary	0	3.25	0.00	8.37	0.00	0.00	0.00
34	ER2j	ExonRegion	0	7.50	0.00	26.83	4.31	2.44	0.00
35	ER2k	ExonRegion	0	4.89	1.23	16.00	2.20	0.21	1.56
36	E2_Db	KnownBoundary	0	3.19	0.00	7.06	0.00	0.00	5.21
37	E2b_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
38	E2b_E5a	KnownJunction	0	0.00	3.21	5.64	0.00	4.16	0.00
39	ER2l	ExonRegion	0	3.38	0.00	10.68	1.48	0.00	1.85
40	E2c_E5a	KnownJunction	0	5.66	0.00	9.79	2.94	0.00	0.00
41	I2_SR1	SilentIntronRegion	0	1.22	0.40	20.30	5.40	0.17	0.53
42	I2_AR2	ActiveIntronRegion	0	15.26	3.23	12.10	1.11	57.81	33.17
43	I2_AR3	ActiveIntronRegion	0	19.81	4.81	8.78	2.16	44.30	65.43
44	I2_SR3	SilentIntronRegion	0	32.74	6.38	36.21	11.21	66.58	9.19
45	I2_AR5	ActiveIntronRegion	0	95.33	12.34	29.84	12.37	160.57	35.02
46	I2_SR4	SilentIntronRegion	0	34.86	5.99	15.85	5.73	0.31	0.00
47	I2_AR7	ActiveIntronRegion	0	0.34	0.00	16.76	4.52	0.00	0.00
48	I2_SR6	SilentIntronRegion	0	1.74	0.50	15.90	5.74	0.56	2.55
49	Ix	Intron	0	12.91	2.34	20.97	6.85	51.98	9.23
50	Ix_SR1	SilentIntronRegion	0	9.29	2.26	21.64	7.34	23.05	2.77
51	Ix_AR1	ActiveIntronRegion	0	38.19	2.88	16.36	3.45	253.82	54.33
52	ER3a	ExonRegion	0	0.00	0.00	2.17	0.00	0.00	0.00
53	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
54	ER4a	ExonRegion	0	0.00	0.00	1.84	1.78	0.00	0.00
55	E4a_E5a	KnownJunction	0	0.00	0.00	3.30	3.26	0.00	0.00
56	ER5a	ExonRegion	0	10.06	15.96	92.94	24.35	8.69	3.19
57	E5a_E6a	KnownJunction	0	0.00	0.00	12.69	10.93	0.00	0.00
58	E5a_E7a	KnownJunction	0	3.74	0.00	38.08	8.10	0.00	0.00
59	E5a_E8b	KnownJunction	1	10.06	48.54	120.80	43.55	9.66	0.00
60	E5a_E10a	NovelJunction	0	0.00	0.00	0.00	6.20	0.00	0.00
61	ER6a	ExonRegion	0	2.62	0.00	12.43	12.31	1.00	0.00
62	E6a_E7b	KnownJunction	0	0.00	0.00	0.00	2.50	0.00	0.00
63	E6a_E8b	KnownJunction	0	3.07	0.00	6.49	0.00	0.00	0.00
64	ER7a	ExonRegion	0	1.34	0.00	28.33	13.76	2.51	0.00
65	E7_Ab	KnownBoundary	0	0.00	0.00	27.61	25.39	7.99	0.00
66	ER7b	ExonRegion	0	2.09	3.26	39.71	20.17	3.37	0.00
67	E7a_E8b	KnownJunction	0	6.87	0.00	24.93	20.61	4.99	0.00
68	E7a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
69	ER8a	ExonRegion	0	2.82	5.19	22.81	9.34	0.90	0.00
70	ER8b	ExonRegion	0	12.23	22.13	124.80	48.49	5.08	1.76
71	E8a_E10a	KnownJunction	0	12.59	3.43	120.45	42.74	7.91	3.95
72	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
73	ER10a	ExonRegion	0	10.80	15.39	126.50	58.45	6.99	3.78
74	E10_Da	KnownBoundary	0	9.88	0.00	32.05	3.15	5.16	9.49
75	E10_Db	KnownBoundary	0	14.16	13.44	97.63	56.11	28.22	0.00
76	ER10b	ExonRegion	0	16.14	8.31	104.28	51.86	13.17	5.02
77	ER10c	ExonRegion	0	10.93	9.95	123.75	53.48	11.19	2.15
78	E10c_E12a	KnownJunction	0	10.48	4.61	144.08	29.91	5.16	0.00
79	I10_AR8	ActiveIntronRegion	0	1.03	3.81	19.27	8.05	0.00	0.00
80	ER11a	ExonRegion	0	1.69	1.11	6.38	1.44	0.00	0.00
81	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
82	I11_AR3	ActiveIntronRegion	0	2.71	0.00	10.47	6.20	0.00	0.00
83	I11_AR4	ActiveIntronRegion	0	0.00	0.00	6.63	6.89	0.00	0.00
84	ER12a	ExonRegion	0	8.45	1.71	103.27	22.47	5.68	0.00
85	ER12b	ExonRegion	0	12.07	4.16	77.12	12.66	6.05	0.00
86	E12_Db	KnownBoundary	0	17.90	6.92	61.14	12.78	13.73	0.00
87	ER12c	ExonRegion	0	16.62	4.16	57.90	16.67	5.19	0.00
88	E12d_E13a	KnownJunction	0	24.52	10.63	121.37	31.81	4.33	0.00
89	ER12d	ExonRegion	0	23.81	13.62	122.02	28.01	3.62	0.00
90	ER13a	ExonRegion	0	16.41	10.51	117.05	26.49	11.69	0.00
91	E13_Da	KnownBoundary	0	10.42	11.19	48.16	26.10	28.72	0.00
92	ER13b	ExonRegion	0	6.63	12.66	68.81	17.38	5.59	0.00
93	E13_Db	NovelBoundary	0	0.00	0.00	0.00	8.92	51.86	0.00
94	E13b_E14a	KnownJunction	1	6.21	30.09	102.81	25.23	0.00	0.00
95	ER14a	ExonRegion	0	20.04	28.62	116.98	41.23	0.67	0.00
96	E14a_E15a	KnownJunction	0	19.28	33.24	171.00	56.98	0.00	0.00
97	ER15a	ExonRegion	0	20.98	21.96	117.15	41.06	2.46	0.00
98	E15a_E16a	KnownJunction	0	16.99	15.86	72.64	29.09	4.91	0.00
99	ER16a	ExonRegion	0	22.72	7.11	93.82	29.81	6.91	0.00
100	E16a_E17a	KnownJunction	0	20.97	11.70	118.58	27.68	12.24	0.00
101	ER17a	ExonRegion	0	15.06	20.93	101.63	31.81	9.50	2.39
102	E17_Da	KnownBoundary	1	7.35	32.68	119.49	56.71	5.16	3.53
103	ER17b	ExonRegion	0	20.79	10.92	137.45	38.76	1.69	0.47
104	E17_Db	KnownBoundary	1	13.50	3.37	272.79	46.92	0.00	0.00
105	ER17c	ExonRegion	0	22.16	6.79	130.96	47.43	2.29	0.00
106	E17_Dc	KnownBoundary	0	20.25	20.92	178.18	45.84	0.00	0.00
107	ER17d	ExonRegion	0	233.05	58.70	107.92	38.41	709.14	147.40
108	E17_Dd	KnownBoundary	0	15.00	2.87	2.68	5.49	114.78	66.91
109	ER17e	ExonRegion	0	8.28	1.61	7.86	3.08	9.85	2.33
110	IG2_AR3	ActiveIntergenicRegion	0	3.94	0.39	7.90	3.42	12.31	2.07