Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	CHL1	Gene	0	83.33	16.76	162.22	56.71	145.91	36.76
2	256509	Transcript	0	67.05	10.51	60.95	39.04	118.12	26.17
3	481167	Transcript	0	0	0	0	0	0	0
4	397491	Transcript	0	0	0	0	0	0	0
5	427688	Transcript	1	0.00	0.00	28.80	0.00	26.22	0.00
6	421198	Transcript	0	0.00	0.00	4.46	4.34	0.03	2.91
7	489224	Transcript	0	1.43	0.68	7.07	2.83	2.60	0.73
8	453040	Transcript	0	0	0	0	0	0	0
9	435603	Transcript	0	0.00	0.00	6.55	0.00	8.74	3.95
10	486881	Transcript	0	0.34	1.15	4.86	4.47	0.29	0.00
11	449294	Transcript	0	1.67	1.56	9.80	4.67	2.49	1.23
12	461289	Transcript	0	1.57	0.00	2.15	1.77	2.59	0.00
13	471332	Transcript	0	2.11	4.67	60.52	27.83	0.00	0.96
14	470880	Transcript	0	1.76	2.08	74.23	20.47	1.21	0.00
15	470005	Transcript	0	1.40	0.23	8.91	2.85	6.79	0.82
16	445697	Transcript	0	0	0	0	0	0	0
17	491608	Transcript	0	0.00	0.00	0.22	0.00	5.14	0.00
18	ER1a	ExonRegion	0	0.00	2.81	0.28	0.93	0.40	0.00
19	E1_Ab	KnownBoundary	0	0.00	6.97	0.00	0.00	3.50	3.44
20	E1_Ac	KnownBoundary	0	0.00	0.00	3.47	0.00	9.82	0.00
21	ER1b	ExonRegion	0	0.00	4.16	4.35	0.00	3.62	0.00
22	ER1c	ExonRegion	0	2.28	2.20	12.38	4.09	3.75	0.94
23	E1a_E6b	KnownJunction	0	9.88	13.33	32.39	13.43	21.56	0.00
24	E1a_E8a	KnownJunction	1	0.00	0.00	28.80	0.00	26.22	0.00
25	ER2a	ExonRegion	0	0.00	0.00	5.56	2.70	0.07	0.70
26	E2a_E6b	KnownJunction	0	0.00	0.00	3.36	5.98	0.00	5.12
27	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
28	ER3b	ExonRegion	0	0.44	3.27	2.56	0.36	1.57	2.39
29	E3_Ac	KnownBoundary	0	0.00	6.58	0.00	3.32	0.00	0.00
30	E3_Ad	KnownBoundary	0	0.00	0.00	9.05	7.07	4.00	5.04
31	ER3c	ExonRegion	0	0.00	4.16	9.00	6.46	1.81	3.70
32	ER3d	ExonRegion	0	0.00	2.69	22.89	6.88	5.10	3.20
33	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
34	E3a_E6b	KnownJunction	0	0.00	0.00	21.12	5.60	4.99	4.37
35	E3a_E8a	KnownJunction	0	0.00	0.00	6.55	0.00	8.74	3.95
36	I3_AR1	ActiveIntronRegion	1	0.00	0.00	7.23	0.00	2.01	21.78
37	ER4a	ExonRegion	0	0.67	2.31	9.71	8.94	0.58	0.00
38	ER5a	ExonRegion	0	2.90	1.90	6.96	3.95	0.83	0.00
39	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
40	ER6a	ExonRegion	0	2.11	2.77	22.45	10.05	6.63	3.70
41	ER6b	ExonRegion	0	8.63	4.92	67.35	27.51	47.35	17.95
42	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
43	E6a_E8a	KnownJunction	0	6.87	5.74	100.93	39.64	106.46	21.32
44	ER7a	ExonRegion	0	2.21	0.55	11.34	8.44	0.95	0.49
45	E7_Da	KnownBoundary	0	0.00	0.00	7.06	10.11	0.00	4.20
46	ER7b	ExonRegion	0	2.86	1.36	14.13	5.65	5.21	1.45
47	ER8a	ExonRegion	0	20.32	13.25	163.29	61.87	49.63	34.14
48	E8_Ab	KnownBoundary	0	16.45	2.76	152.33	46.33	60.18	49.79
49	ER8b	ExonRegion	0	20.17	10.75	382.53	122.18	81.07	39.23
50	E8a_E9a	KnownJunction	0	23.50	22.55	609.33	226.08	214.75	91.34
51	ER9a	ExonRegion	0	18.27	19.09	327.45	133.26	82.81	47.31
52	E9a_E10a	KnownJunction	0	19.40	2.59	256.16	82.32	223.15	209.81
53	ER10a	ExonRegion	1	21.78	18.99	424.17	179.07	91.38	216.62
54	E10_Da	KnownBoundary	1	25.55	31.22	647.02	273.50	108.12	507.60
55	ER10b	ExonRegion	1	20.29	26.26	758.45	261.62	42.94	226.36
56	E10_Db	KnownBoundary	1	14.40	22.89	657.49	160.18	45.20	252.29
57	ER10c	ExonRegion	1	14.85	16.69	420.83	136.51	73.46	179.61
58	E10_Dc	KnownBoundary	0	0.00	0.00	6.32	0.00	0.00	0.00
59	E10c_E11a	KnownJunction	1	21.39	6.97	319.30	112.88	155.40	359.42
60	ER10d	ExonRegion	0	1.57	0.00	2.15	1.77	2.59	0.00
61	E11_Aa	NovelBoundary	0	0.00	0.00	6.66	3.37	17.23	33.41
62	ER11a	ExonRegion	0	13.97	12.75	393.68	126.10	8.92	23.79
63	E11a_E12a	KnownJunction	0	17.47	2.98	352.82	94.39	0.00	4.03
64	ER12a	ExonRegion	0	12.61	3.32	290.56	93.31	1.81	2.33
65	E12_Da	KnownBoundary	0	6.75	2.81	205.16	81.83	5.16	4.62
66	ER12b	ExonRegion	0	17.17	6.63	200.46	73.39	1.48	0.33
67	E12b_E13a	KnownJunction	0	0.00	0.00	30.17	27.30	0.00	0.00
68	E12b_E14a	KnownJunction	0	16.27	15.47	314.00	66.34	0.00	0.00
69	ER13a	ExonRegion	0	0.62	0.00	38.79	39.40	1.58	0.00
70	E13a_E14a	KnownJunction	0	2.95	0.00	38.48	51.65	5.16	0.00
71	ER14a	ExonRegion	0	17.36	4.91	295.03	125.16	1.73	2.28
72	E14a_E15a	KnownJunction	0	12.23	9.90	369.45	179.92	0.00	0.00
73	ER15a	ExonRegion	0	12.29	7.61	320.92	136.89	4.71	0.79
74	E15a_E16a	KnownJunction	0	10.73	10.12	244.89	50.19	4.33	0.00
75	ER16a	ExonRegion	0	5.89	6.03	165.52	42.22	2.78	0.52
76	E16a_E17a	KnownJunction	0	6.81	6.47	161.04	49.37	0.00	4.95
77	ER17a	ExonRegion	0	11.56	9.33	189.66	73.17	8.76	1.81
78	E17a_E18b	KnownJunction	0	12.35	29.70	295.27	120.44	4.83	4.95
79	ER18a	ExonRegion	0	4.22	9.35	118.40	54.93	0.00	1.85
80	ER18b	ExonRegion	0	7.48	15.44	185.52	64.10	6.74	3.39
81	E18a_E19a	KnownJunction	0	6.33	22.39	254.46	59.38	5.16	0.00
82	ER19a	ExonRegion	0	11.15	22.57	291.14	91.30	3.12	0.79
83	E19_Da	KnownBoundary	0	0.00	0.00	6.94	5.55	0.00	0.00
84	E19a_E20a	KnownJunction	0	30.97	29.08	518.71	140.12	12.65	0.00
85	ER19b	ExonRegion	0	0.00	0.00	2.63	0.72	0.00	0.08
86	ER20a	ExonRegion	0	12.01	13.35	331.10	98.85	36.97	7.63
87	E20_Da	NovelBoundary	0	17.96	5.29	3.53	3.37	233.89	117.62
88	E20a_E22b	KnownJunction	0	16.15	15.64	558.33	140.23	4.41	0.00
89	ER21a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
90	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
91	ER22a	ExonRegion	0	5.28	6.23	222.68	61.40	3.62	0.00
92	ER22b	ExonRegion	0	11.49	13.62	264.91	81.22	5.60	0.00
93	E22a_E23a	KnownJunction	1	9.04	33.92	144.08	30.61	0.00	0.00
94	ER23a	ExonRegion	1	7.39	29.09	142.03	49.01	0.00	0.00
95	ER23b	ExonRegion	0	11.72	13.28	371.04	107.55	1.98	0.00
96	E23a_E24a	KnownJunction	0	14.88	5.29	519.67	192.05	7.41	0.00
97	ER24a	ExonRegion	0	10.70	18.23	258.86	95.32	5.44	0.71
98	E24a_E25a	KnownJunction	1	6.81	31.22	147.66	58.94	3.83	0.00
99	ER25a	ExonRegion	0	8.50	11.29	129.19	48.88	2.55	0.00
100	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	2.28	0.00	0.00
101	E25a_E27a	KnownJunction	0	21.51	3.49	150.17	41.05	4.49	0.00
102	Ix	Intron	0	3.10	0.00	28.30	13.84	1.99	0.00
103	Ix_SR1	SilentIntronRegion	0	3.12	0.00	28.44	13.91	2.00	0.00
104	ER26a	ExonRegion	0	2.81	0.46	17.82	3.41	13.58	1.64
105	E26_Da	NovelBoundary	1	0.00	0.00	6.20	5.82	229.90	24.10
106	Ix	Intron	0	4.73	0.00	13.68	6.21	59.81	11.46
107	Ix_SR1	SilentIntronRegion	0	1.05	0.00	23.02	8.35	34.87	5.67
108	Ix_AR1	ActiveIntronRegion	0	5.75	0.00	11.15	5.63	66.76	13.06
109	I26	Intron	0	8.78	2.00	15.37	6.77	40.71	14.98
110	I26_AR1	ActiveIntronRegion	0	29.98	5.64	10.94	2.27	142.34	66.10
111	I26_AR2	ActiveIntronRegion	0	6.35	0.00	19.40	14.23	8.26	0.84
112	I26_SR2	SilentIntronRegion	0	4.10	2.43	14.27	4.95	44.69	12.01
113	I26_AR5	ActiveIntronRegion	0	2.64	0.00	15.34	11.71	1.31	1.94
114	I26_SR3	SilentIntronRegion	0	1.13	0.00	16.02	12.95	0.00	0.00
115	E27_Aa	NovelBoundary	0	2.95	13.89	18.44	6.09	0.00	0.00
116	ER27a	ExonRegion	0	13.07	20.71	159.79	53.86	6.48	0.31
117	E27_Da	KnownBoundary	0	17.47	16.76	181.48	63.40	4.99	3.86
118	ER27b	ExonRegion	0	8.87	9.81	108.92	32.35	2.20	1.39
119	E27b_E28a	KnownJunction	0	20.97	9.79	99.73	25.34	8.82	5.04
120	ER27c	ExonRegion	0	15.43	6.23	100.68	27.93	5.74	1.85
121	ER28a	ExonRegion	0	12.80	4.58	203.90	71.31	4.88	4.40
122	E28a_E29a	KnownJunction	0	16.99	13.67	392.73	144.96	4.91	4.20
123	ER29a	ExonRegion	0	20.90	12.13	416.42	137.24	2.69	4.06
124	E29a_E30a	KnownJunction	0	26.93	9.00	654.53	169.15	7.41	0.00
125	ER30a	ExonRegion	0	12.67	8.19	356.03	80.06	0.40	3.22
126	E30a_E31a	KnownJunction	1	16.63	8.16	308.37	53.01	0.00	0.00
127	ER31a	ExonRegion	0	14.78	12.47	410.24	84.37	0.00	0.00
128	ER31b	ExonRegion	0	15.65	11.01	247.99	46.59	1.31	2.15
129	E31a_E32a	KnownJunction	0	12.71	13.72	128.77	56.60	8.16	4.79
130	E31a_E33a	KnownJunction	0	0.00	0.00	3.07	9.73	0.00	0.00
131	ER32a	ExonRegion	0	30.82	12.67	248.12	61.84	16.78	4.73
132	E32_Da	NovelBoundary	0	0.00	0.00	0.00	2.61	22.89	22.42
133	E32a_E33a	KnownJunction	0	17.05	14.06	352.88	73.29	22.89	9.24
134	I32	Intron	0	0.27	1.05	4.11	1.09	9.34	16.10
135	I32_AR1	ActiveIntronRegion	0	0.37	1.10	4.09	1.53	12.87	22.36
136	ER33a	ExonRegion	0	32.84	10.55	326.07	126.58	12.45	4.26
137	E33a_E34a	KnownJunction	1	97.37	21.65	583.60	244.35	29.30	0.00
138	ER34a	ExonRegion	0	52.58	13.46	371.77	136.45	12.33	1.65
139	E34a_E35a	KnownJunction	0	0.00	0.00	0.00	0.00	8.32	0.00
140	E34a_E36a	KnownJunction	0	42.06	5.17	246.89	72.70	10.32	3.53
141	E35_Aa	NovelBoundary	0	0.00	0.00	26.47	8.26	25.89	25.61
142	ER35a	ExonRegion	0	0.00	0.00	0.45	0.00	1.95	0.00
143	I35_AR2	ActiveIntronRegion	0	0.77	0.00	20.73	11.72	1.32	0.00
144	E36_Aa	NovelBoundary	0	0.00	0.00	37.29	32.62	3.83	0.00
145	ER36a	ExonRegion	0	31.10	26.36	372.08	104.79	19.49	2.18
146	E36_Da	KnownBoundary	0	42.24	13.95	372.18	86.29	59.60	4.03
147	ER36b	ExonRegion	0	63.14	13.69	259.57	90.03	146.79	33.52
148	E36_Db	KnownBoundary	0	55.86	9.00	526.90	263.17	49.86	9.49
149	ER36c	ExonRegion	0	331.70	49.75	197.04	75.89	583.46	130.85
150	IG4_AR1	ActiveIntergenicRegion	0	0.70	0.00	2.90	0.00	12.05	7.82