Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	AGAP1	Gene	0	59.72	75.87	57.35	50.79	79.64	64.44
2	409457	Transcript	0	0.21	0.20	1.07	0.95	0.62	0.18
3	336665	Transcript	0	0	0	0	0	0	0
4	304032	Transcript	0	0	0	0	0	0	0
5	402604	Transcript	0	1.49	1.10	3.82	3.03	0.00	0.00
6	409538	Transcript	0	8.66	17.00	13.51	7.97	0.00	0.00
7	448025	Transcript	0	0	0	0	0	0	0
8	418654	Transcript	0	0	0	0	0	0	0
9	466575	Transcript	0	1.78	4.44	1.35	1.72	0.04	0.01
10	482882	Transcript	0	2.28	0.97	11.93	6.26	0.50	1.28
11	453371	Transcript	0	0.00	0.81	0.89	0.88	0.00	0.00
12	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
13	ER1b	ExonRegion	0	3.10	5.91	7.12	2.58	0.00	0.00
14	E1a_E4a	KnownJunction	0	24.64	18.67	59.94	26.91	0.00	0.00
15	E1a_E22a	NovelJunction	0	0.00	6.64	0.00	0.00	0.00	0.00
16	I1_AR1	ActiveIntronRegion	0	4.22	6.23	13.40	8.62	0.00	0.00
17	I1_AR2	ActiveIntronRegion	0	4.22	6.23	18.25	8.62	0.00	0.00
18	I1_AR3	ActiveIntronRegion	0	6.33	6.23	16.02	7.41	0.00	0.00
19	I1_AR4	ActiveIntronRegion	0	6.80	6.23	18.83	2.15	0.00	0.00
20	I1_AR5	ActiveIntronRegion	0	9.08	3.74	23.25	4.31	0.00	0.00
21	I1_AR6	ActiveIntronRegion	0	4.94	2.18	21.29	13.96	0.00	0.00
22	I1_AR7	ActiveIntronRegion	0	5.50	2.90	15.92	12.43	0.00	0.00
23	I1_AR1	ActiveIntronRegion	0	19.36	14.28	14.72	7.46	48.93	26.49
24	I1_SR2	SilentIntronRegion	0	17.89	19.05	19.35	12.78	0.00	0.00
25	I1_SR3	SilentIntronRegion	0	7.92	5.78	11.37	12.74	0.00	0.00
26	ER2a	ExonRegion	0	2.97	2.19	7.64	6.05	0.00	0.00
27	E2_Da	NovelBoundary	0	6.09	2.31	19.13	18.32	0.00	0.00
28	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
29	I2_AR1	ActiveIntronRegion	0	1.92	4.50	8.75	0.75	21.32	9.86
30	I2_AR2	ActiveIntronRegion	0	3.17	4.16	16.29	5.03	63.88	18.82
31	I2_AR3	ActiveIntronRegion	0	4.22	4.16	9.16	6.46	59.35	18.03
32	I2_SR2	SilentIntronRegion	0	1.21	8.43	9.52	8.02	41.21	13.45
33	I2_AR4	ActiveIntronRegion	0	12.17	7.08	12.14	5.25	74.77	29.92
34	I2_AR5	ActiveIntronRegion	0	13.31	8.78	3.66	4.12	0.36	2.19
35	I2_SR5	SilentIntronRegion	0	2.75	2.09	14.44	6.77	0.54	0.00
36	I2_AR7	ActiveIntronRegion	0	4.22	1.60	20.28	11.56	1.41	0.00
37	I2_AR1	ActiveIntronRegion	0	5.73	0.00	21.73	24.00	26.09	20.36
38	I2_AR2	ActiveIntronRegion	0	15.22	8.85	17.90	10.96	19.10	35.58
39	I2_AR3	ActiveIntronRegion	0	8.48	6.63	3.75	10.93	10.11	4.57
40	I2_SR3	SilentIntronRegion	0	4.55	3.21	6.86	6.87	28.81	15.30
41	I2_AR4	ActiveIntronRegion	0	24.98	13.46	4.35	2.45	45.90	40.28
42	I2_SR10	SilentIntronRegion	0	3.04	13.23	13.91	4.27	6.06	3.96
43	I2_SR15	SilentIntronRegion	0	12.42	8.35	4.71	3.68	4.12	2.14
44	I2_AR29	ActiveIntronRegion	0	2.99	2.17	5.34	2.49	23.28	67.61
45	ER3a	ExonRegion	0	1.05	6.27	2.49	0.93	0.00	0.00
46	E3a_E4a	KnownJunction	0	16.27	27.73	24.53	15.01	0.00	0.00
47	I3_AR3	ActiveIntronRegion	0	2.11	2.08	8.10	11.36	0.00	0.00
48	I3_AR4	ActiveIntronRegion	0	2.11	2.08	10.07	12.73	0.00	0.00
49	I3_AR7	ActiveIntronRegion	0	2.95	1.33	7.96	6.02	123.73	90.59
50	ER4a	ExonRegion	0	46.56	64.58	78.91	49.07	0.00	0.00
51	E4a_E5a	KnownJunction	0	84.60	101.07	84.31	52.52	0.00	0.00
52	ER5a	ExonRegion	0	39.49	77.55	54.66	43.92	1.56	2.84
53	E5_Da	NovelBoundary	1	0.00	2.59	11.27	28.71	0.00	0.00
54	E5a_E6a	KnownJunction	0	20.55	26.60	3.53	18.43	0.00	9.24
55	E5a_E9a	NovelJunction	0	0.00	10.46	3.53	0.00	0.00	0.00
56	I5_SR1	SilentIntronRegion	0	2.33	3.16	13.47	14.38	0.32	0.33
57	I5_AR1	ActiveIntronRegion	0	9.62	4.34	12.76	11.76	3.85	1.31
58	I5_SR2	SilentIntronRegion	0	3.81	2.03	8.36	5.42	21.29	12.42
59	I5_SR3	SilentIntronRegion	0	2.86	4.20	12.83	8.53	6.39	5.50
60	I5_AR2	ActiveIntronRegion	0	3.99	2.20	11.83	9.58	136.17	69.23
61	I5_SR4	SilentIntronRegion	0	3.27	3.32	15.25	12.91	0.52	1.39
62	I5_AR3	ActiveIntronRegion	0	5.48	5.68	18.37	15.08	0.91	0.00
63	I5_SR5	SilentIntronRegion	0	11.19	8.67	12.04	11.29	0.00	1.19
64	I5_AR4	ActiveIntronRegion	0	15.95	12.60	12.17	12.60	80.96	148.32
65	I5_AR5	ActiveIntronRegion	0	9.79	6.42	11.88	6.34	172.59	197.82
66	I5_SR7	SilentIntronRegion	0	2.70	3.63	18.18	13.23	0.22	0.44
67	I5_SR8	SilentIntronRegion	0	5.79	5.17	7.04	10.68	0.16	4.28
68	I5_AR8	ActiveIntronRegion	0	4.11	7.33	18.22	8.71	0.64	0.00
69	ER6a	ExonRegion	0	43.60	68.95	77.25	66.63	1.98	9.19
70	E6a_E7a	KnownJunction	0	62.43	108.83	85.56	80.47	4.00	14.52
71	ER7a	ExonRegion	0	89.62	134.62	128.58	118.62	4.55	8.09
72	E7_Da	NovelBoundary	0	113.82	156.64	159.28	200.26	0.00	22.16
73	E7b_E8a	KnownJunction	1	46.40	178.64	141.97	153.77	3.66	4.53
74	ER7b	ExonRegion	0	78.12	156.63	159.68	158.26	0.84	8.20
75	I7_AR1	ActiveIntronRegion	0	4.14	1.30	9.32	11.28	0.76	0.00
76	I7_AR5	ActiveIntronRegion	0	2.81	2.96	10.67	6.72	24.68	24.52
77	I7_SR3	SilentIntronRegion	0	1.12	2.26	6.97	6.69	27.88	26.13
78	ER8a	ExonRegion	0	112.15	170.61	131.17	147.99	7.29	13.75
79	E8a_E9a	KnownJunction	0	160.82	252.94	301.53	300.47	4.66	26.11
80	I8_AR2	ActiveIntronRegion	0	1.40	3.67	3.42	3.51	243.67	131.96
81	I8_AR4	ActiveIntronRegion	0	4.22	2.08	18.74	8.62	19.21	13.19
82	Ix	Intron	0	0.50	2.96	7.22	12.79	0.00	0.00
83	Ix_SR1	SilentIntronRegion	0	0.50	2.98	7.27	12.87	0.00	0.00
84	Ix	Intron	0	1.68	1.92	6.75	10.26	0.48	1.84
85	Ix_SR1	SilentIntronRegion	0	1.68	1.93	6.76	10.27	0.48	1.84
86	Ix_AR2	ActiveIntronRegion	0	7.65	9.09	24.71	10.77	0.00	0.00
87	I8_AR1	ActiveIntronRegion	0	7.42	1.00	4.16	5.50	122.10	81.57
88	ER9a	ExonRegion	0	109.43	212.35	179.77	191.02	8.59	12.32
89	E9a_E10a	KnownJunction	0	149.01	194.27	74.06	121.31	5.16	30.64
90	ER10a	ExonRegion	0	127.14	227.73	163.04	195.93	7.53	27.25
91	E10a_E11a	KnownJunction	1	83.64	189.60	48.33	120.11	29.96	27.20
92	ER11a	ExonRegion	0	107.38	186.18	87.11	125.94	4.78	24.92
93	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
94	E11a_E13a	KnownJunction	0	208.43	232.46	105.08	119.51	0.00	70.27
95	I11_AR6	ActiveIntronRegion	0	10.91	13.35	2.78	1.99	96.70	103.39
96	I11_AR7	ActiveIntronRegion	0	3.01	0.47	21.25	16.94	0.00	0.00
97	ER12a	ExonRegion	0	0.62	0.61	3.21	2.85	1.86	0.54
98	ER13a	ExonRegion	0	187.66	254.52	112.93	183.15	5.85	14.19
99	E13_Ab	KnownBoundary	0	224.45	301.59	138.16	247.56	23.06	4.79
100	ER13b	ExonRegion	0	217.74	252.35	167.89	217.54	10.11	6.62
101	E13_Da	NovelBoundary	0	0.00	0.00	12.92	16.15	0.00	0.00
102	E13a_E14a	KnownJunction	0	253.74	320.04	224.57	204.82	15.32	18.13
103	ER14a	ExonRegion	0	233.67	280.83	210.84	250.08	7.70	5.55
104	E14_Ab	KnownBoundary	0	222.53	236.57	159.22	220.92	14.23	9.24
105	ER14b	ExonRegion	0	199.36	230.80	144.34	187.28	1.98	3.82
106	E14a_E15a	KnownJunction	0	79.30	127.62	47.48	45.95	0.00	0.00
107	E14a_E16a	KnownJunction	0	150.82	175.54	129.28	115.92	0.00	4.20
108	I14_AR1	ActiveIntronRegion	0	4.52	3.20	7.46	13.80	1.17	2.16
109	I14_SR2	SilentIntronRegion	0	2.37	3.49	7.21	8.30	21.06	33.89
110	ER15a	ExonRegion	0	44.76	82.55	47.97	45.67	1.67	0.00
111	E15a_E16a	KnownJunction	0	73.63	61.31	33.98	37.25	0.00	0.00
112	I15_AR1	ActiveIntronRegion	0	0.00	0.00	11.54	13.97	11.90	31.11
113	ER16a	ExonRegion	0	146.16	182.86	127.61	119.39	0.00	0.67
114	E16a_E17a	KnownJunction	0	24.46	5.51	26.87	5.82	0.00	0.00
115	E16a_E18a	KnownJunction	0	81.10	138.81	39.39	29.80	0.00	0.00
116	I16_AR1	ActiveIntronRegion	0	2.61	1.71	10.74	15.81	2.48	21.95
117	I16_AR8	ActiveIntronRegion	0	2.11	0.00	10.86	16.70	0.00	10.41
118	I16_AR10	ActiveIntronRegion	0	1.32	2.32	5.69	4.17	58.73	54.32
119	ER17a	ExonRegion	1	28.24	3.99	14.63	14.99	0.53	0.00
120	E17a_E18a	KnownJunction	0	26.87	5.96	11.67	23.22	4.41	0.00
121	ER18a	ExonRegion	0	88.32	137.44	84.79	65.68	3.63	0.64
122	E18_Da	NovelBoundary	0	43.75	128.80	51.12	57.04	12.24	4.11
123	E18b_E19b	KnownJunction	0	83.21	161.42	72.75	73.29	7.32	3.53
124	ER18b	ExonRegion	0	80.11	145.54	88.71	80.42	5.42	1.85
125	ER19a	ExonRegion	0	1.78	4.44	1.35	1.72	0.04	0.01
126	E19_Ab	KnownBoundary	0	2.47	0.00	0.00	0.00	0.00	0.00
127	ER19b	ExonRegion	0	93.72	120.43	50.47	60.03	3.40	0.21
128	E19a_E21a	KnownJunction	0	130.76	184.03	34.16	31.54	31.38	15.03
129	ER20a	ExonRegion	0	0.00	1.62	1.78	1.77	0.00	0.00
130	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
131	ER21a	ExonRegion	0	96.56	137.69	63.98	62.32	5.63	1.89
132	E21_Da	KnownBoundary	0	2.65	5.06	6.03	12.78	0.00	0.00
133	E21a_E22a	KnownJunction	0	103.34	85.72	47.42	47.47	4.25	0.00
134	ER21b	ExonRegion	0	2.28	0.97	11.93	6.26	0.50	1.28
135	I21_AR1	ActiveIntronRegion	0	2.52	4.00	14.97	8.29	0.32	0.97
136	I21_AR2	ActiveIntronRegion	0	16.42	11.93	10.26	12.43	95.85	83.73
137	I21_AR3	ActiveIntronRegion	0	13.72	5.52	14.74	5.04	7.31	7.60
138	I21_AR7	ActiveIntronRegion	0	8.55	5.80	3.16	4.86	19.71	10.83
139	I21_AR8	ActiveIntronRegion	0	11.80	0.58	10.65	12.09	8.25	10.61
140	ER22a	ExonRegion	0	55.43	103.20	33.81	45.63	1.87	0.00
141	E22_Da	KnownBoundary	0	45.01	122.90	37.34	40.02	4.16	0.00
142	ER22b	ExonRegion	0	43.25	112.94	14.48	21.15	1.04	0.00
143	E22_Db	KnownBoundary	0	61.58	138.64	12.81	14.46	14.48	4.87
144	ER22c	ExonRegion	0	70.73	97.82	32.72	38.53	4.14	0.63
145	E22c_E23a	KnownJunction	0	207.16	173.85	31.65	45.13	163.89	31.99
146	ER23a	ExonRegion	0	107.39	122.03	93.51	73.84	400.95	281.91
147	E23_Da	KnownBoundary	0	125.39	179.93	92.79	30.45	73.33	197.55
148	ER23b	ExonRegion	0	102.24	100.51	98.60	65.58	47.55	93.90
149	IG18_AR1	ActiveIntergenicRegion	0	87.49	118.08	118.34	78.32	4.97	17.42
150	IG18_SR1	SilentIntergenicRegion	0	136.95	181.40	74.58	71.45	2.45	0.36
151	IG18_AR2	ActiveIntergenicRegion	0	263.69	248.24	64.74	74.86	3.79	0.34
152	IG18_SR2	SilentIntergenicRegion	0	218.20	235.15	65.26	57.43	9.85	3.53
153	IG18_AR3	ActiveIntergenicRegion	0	278.60	252.14	64.45	42.01	298.90	198.87
154	IG18_SR3	SilentIntergenicRegion	0	1.47	0.00	0.75	3.36	34.43	18.91