Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	CHD6	Gene	0	27.99	28.01	38.93	30.59	10.88	22.65
2	309279	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
3	373233	Transcript	0	12.94	20.00	62.38	47.60	3.26	3.72
4	482596	Transcript	0	16.51	5.68	4.95	13.16	13.40	13.01
5	373222	Transcript	0	2.43	0.70	2.27	3.64	2.68	1.12
6	440647	Transcript	0	0.02	0.11	2.35	0.00	3.04	6.12
7	470470	Transcript	0	0	0	0	0	0	0
8	440697	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
9	476641	Transcript	0	0.87	0.00	4.57	1.10	0.00	0.50
10	480022	Transcript	0	1.95	2.45	10.00	5.28	0.00	0.18
11	ER1a	ExonRegion	0	3.37	2.84	5.38	2.35	7.35	6.57
12	E1_Ab	KnownBoundary	0	3.56	0.00	3.47	6.14	10.32	10.41
13	E1_Ac	KnownBoundary	1	9.70	13.16	21.69	0.00	53.27	73.97
14	ER1b	ExonRegion	1	21.11	16.62	36.21	9.10	29.13	35.79
15	ER1c	ExonRegion	0	57.19	27.07	79.82	29.79	36.47	49.45
16	E1a_E3a	KnownJunction	0	2.59	0.00	0.00	2.94	0.00	0.00
17	E1a_E4a	KnownJunction	1	79.00	29.53	117.89	27.78	51.11	83.45
18	E1a_E5a	KnownJunction	0	16.51	5.68	4.95	13.16	13.40	13.01
19	I1	Intron	0	1.06	0.57	9.42	4.70	0.00	0.05
20	I1_AR1	ActiveIntronRegion	0	0.00	0.00	14.59	2.15	0.00	0.00
21	I1_AR2	ActiveIntronRegion	0	0.00	0.00	17.38	2.96	0.00	0.00
22	I1_AR3	ActiveIntronRegion	0	0.97	1.32	15.74	7.36	0.00	0.00
23	I1_SR2	SilentIntronRegion	0	6.17	0.00	20.81	4.39	0.00	0.00
24	ER2a	ExonRegion	0	0.03	0.22	1.17	0.00	1.59	3.76
25	E2a_E4a	KnownJunction	0	0.00	0.00	3.53	0.00	4.49	8.48
26	I2_AR3	ActiveIntronRegion	0	3.92	0.00	11.28	4.40	0.00	0.00
27	I2_AR9	ActiveIntronRegion	0	3.83	0.96	18.13	11.98	0.15	0.51
28	I2_AR10	ActiveIntronRegion	0	9.84	3.77	24.09	17.31	0.77	2.04
29	I2_AR11	ActiveIntronRegion	0	0.50	0.97	4.59	1.01	3.39	8.25
30	E3_Aa	NovelBoundary	0	0.00	0.00	11.10	5.60	13.82	0.00
31	ER3a	ExonRegion	0	4.25	1.12	4.70	6.49	6.86	1.00
32	E3a_E4a	NovelJunction	0	0.00	0.00	0.00	5.49	0.00	0.00
33	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
34	I3_SR1	SilentIntronRegion	0	0.49	1.93	4.33	1.51	10.93	3.63
35	I3_AR1	ActiveIntronRegion	0	0.70	0.00	4.55	3.11	120.27	88.80
36	I3_SR3	SilentIntronRegion	0	3.19	1.58	2.38	1.47	21.13	9.96
37	I3_AR3	ActiveIntronRegion	0	8.29	3.95	5.60	3.13	99.82	62.06
38	ER4a	ExonRegion	0	107.26	66.33	103.89	41.58	46.81	79.24
39	E4a_E5a	KnownJunction	0	140.04	111.20	64.44	51.76	112.28	180.34
40	E5_Aa	NovelBoundary	1	3.01	0.00	26.98	0.00	0.00	0.00
41	ER5a	ExonRegion	0	353.41	257.60	200.50	207.36	149.96	309.11
42	E5_Ab	KnownBoundary	0	612.68	603.62	278.93	281.49	594.05	970.45
43	ER5b	ExonRegion	0	504.54	542.42	211.96	189.82	221.21	802.25
44	E5_Da	KnownBoundary	0	434.51	515.04	139.92	137.78	33.21	652.43
45	ER5c	ExonRegion	0	397.07	437.29	138.22	113.20	197.82	561.39
46	E5b_E6a	KnownJunction	0	372.02	385.56	100.64	108.85	710.16	1523.56
47	I5_AR2	ActiveIntronRegion	0	1.68	0.63	2.15	1.22	4.81	8.56
48	E6_Aa	NovelBoundary	0	3.74	3.49	0.00	0.00	25.39	8.06
49	ER6a	ExonRegion	0	270.83	291.24	93.22	76.77	175.59	385.73
50	E6_Da	KnownBoundary	0	242.95	244.67	77.08	59.70	8.74	29.47
51	ER6b	ExonRegion	0	262.01	272.76	78.49	83.32	9.06	31.29
52	E6b_E7a	KnownJunction	0	219.69	168.29	96.15	64.87	21.89	73.13
53	ER7a	ExonRegion	0	188.13	147.46	94.63	73.09	34.95	77.23
54	E7a_E8a	KnownJunction	0	94.42	48.37	43.55	16.58	8.91	8.73
55	I7_AR2	ActiveIntronRegion	0	0.67	0.00	3.45	1.03	11.82	9.82
56	ER8a	ExonRegion	0	76.83	44.69	52.41	29.00	4.81	9.17
57	E8a_E9a	KnownJunction	0	56.10	47.08	40.08	21.86	4.16	16.88
58	ER8b	ExonRegion	0	61.42	44.01	45.03	30.65	3.53	10.18
59	ER9a	ExonRegion	0	98.23	73.10	98.13	63.28	9.47	15.25
60	E9_Da	KnownBoundary	0	3.74	8.94	3.53	0.00	17.73	4.62
61	E9a_E9b	KnownJunction	0	137.44	78.69	148.12	84.33	17.48	23.00
62	ER9b	ExonRegion	0	2.88	1.66	4.37	5.14	3.87	3.48
63	E9_Ab	KnownBoundary	0	0.00	2.42	11.56	12.40	0.00	0.00
64	ER9c	ExonRegion	0	84.07	62.47	99.71	57.35	9.57	11.44
65	E9_Db	KnownBoundary	0	3.13	0.00	6.94	7.67	8.66	0.00
66	E9b_E10a	KnownJunction	0	44.41	43.65	33.53	31.26	5.16	8.90
67	ER9d	ExonRegion	0	0.20	1.90	7.73	6.93	2.92	9.30
68	E10_Aa	NovelBoundary	0	0.00	0.00	2.56	6.04	10.32	0.00
69	ER10a	ExonRegion	0	42.42	47.64	32.21	26.87	5.71	3.79
70	E10a_E11a	KnownJunction	0	32.12	37.68	33.76	27.08	9.66	4.70
71	ER11a	ExonRegion	0	33.91	28.42	35.11	36.19	5.29	2.43
72	E11_Da	NovelBoundary	0	0.00	0.00	16.57	2.45	0.00	0.00
73	E11a_E12a	KnownJunction	0	31.27	12.77	31.42	19.79	4.83	4.79
74	E12_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	40.45	21.91
75	ER12a	ExonRegion	0	29.94	12.07	33.44	35.14	10.74	4.70
76	E12_Da	NovelBoundary	0	0.00	0.00	5.75	5.87	39.37	24.10
77	E12a_E13a	KnownJunction	1	29.89	2.98	28.58	30.72	0.00	12.59
78	I12_SR1	SilentIntronRegion	0	0.00	0.00	0.89	0.88	51.11	89.86
79	ER13a	ExonRegion	0	24.56	26.90	125.32	74.06	0.04	2.97
80	E13a_E14a	KnownJunction	1	5.06	28.85	45.77	42.57	0.00	0.00
81	ER14a	ExonRegion	1	13.79	38.21	189.32	102.84	0.00	1.54
82	E14_Da	KnownBoundary	1	18.02	51.91	286.62	149.74	0.00	5.21
83	E14a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
84	E14_Db	KnownBoundary	0	21.99	32.57	250.81	142.24	0.00	5.21
85	E14b_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
86	ER14b	ExonRegion	1	23.22	53.46	343.55	190.15	0.00	3.70
87	ER14c	ExonRegion	0	13.86	28.79	156.06	92.10	0.00	2.03
88	E14c_E15a	KnownJunction	0	7.17	13.05	45.77	39.31	0.00	4.70
89	E15_Aa	NovelBoundary	0	0.00	6.97	15.26	0.00	0.00	4.11
90	ER15a	ExonRegion	0	7.51	13.94	52.58	57.24	1.26	5.54
91	E15_Da	NovelBoundary	0	0.00	6.75	26.81	9.57	0.00	5.04
92	E15a_E16a	KnownJunction	1	26.51	22.61	63.87	115.81	4.33	10.41
93	I15_SR1	SilentIntronRegion	0	1.41	1.51	9.91	5.11	1.10	1.58
94	ER16a	ExonRegion	0	12.63	19.36	73.50	92.31	6.10	4.88
95	E16_Ab	KnownBoundary	0	20.79	32.62	147.15	172.36	3.91	11.33
96	ER16b	ExonRegion	0	17.82	28.09	84.17	99.32	4.04	4.42
97	E16a_E17a	KnownJunction	1	17.66	64.63	153.47	136.91	4.99	12.17
98	E17_Aa	NovelBoundary	0	0.00	0.00	16.68	3.37	0.00	0.00
99	ER17a	ExonRegion	0	11.15	17.69	66.07	60.96	1.72	3.44
100	E17a_E19a	KnownJunction	0	12.83	6.52	45.54	36.43	4.58	5.21
101	E18a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
102	ER18a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
103	E19_Aa	NovelBoundary	1	6.63	0.00	0.00	15.71	0.00	5.21
104	ER19a	ExonRegion	0	12.85	14.32	37.28	34.72	1.16	5.33
105	E19_Da	KnownBoundary	0	3.74	0.00	9.62	6.31	0.00	0.00
106	E19a_E20a	KnownJunction	0	5.24	19.35	24.65	19.14	4.74	0.00
107	ER19b	ExonRegion	0	0.87	0.00	4.57	1.10	0.00	0.50
108	ER20a	ExonRegion	1	6.92	24.20	40.47	32.97	3.36	1.48
109	E20a_E21a	KnownJunction	1	0.00	34.42	25.73	24.69	12.40	4.53
110	ER21a	ExonRegion	1	9.10	35.16	58.54	37.06	6.00	8.67
111	E21a_E22a	KnownJunction	0	12.05	32.85	51.80	50.13	32.38	20.07
112	E22_Aa	NovelBoundary	1	0.00	0.00	0.00	12.45	0.00	0.00
113	ER22a	ExonRegion	1	10.82	31.76	87.45	50.81	6.74	11.62
114	E22_Da	NovelBoundary	0	0.00	5.96	6.32	13.27	12.32	10.41
115	E22a_E23a	KnownJunction	0	25.13	20.47	122.79	59.32	0.00	0.00
116	I22	Intron	0	1.15	2.16	9.88	5.43	0.09	0.00
117	I22_SR1	SilentIntronRegion	0	0.88	1.49	12.04	5.47	0.14	0.00
118	E23_Aa	NovelBoundary	0	7.11	4.61	8.48	15.39	0.00	0.00
119	ER23a	ExonRegion	0	11.68	19.63	58.43	40.32	0.00	0.00
120	E23a_E24a	KnownJunction	0	22.11	31.44	48.50	30.88	0.00	0.00
121	I23_AR1	ActiveIntronRegion	0	1.26	0.89	8.42	7.87	0.00	0.00
122	E24_Aa	NovelBoundary	0	0.00	0.00	0.00	2.50	10.24	0.00
123	ER24a	ExonRegion	0	10.75	14.70	32.26	28.47	4.64	0.00
124	E24a_E25a	KnownJunction	1	6.81	6.97	8.94	41.81	10.07	0.00
125	I24	Intron	0	2.23	0.22	9.64	4.55	1.72	0.39
126	I24_AR1	ActiveIntronRegion	0	2.61	0.00	10.24	5.26	2.02	0.42
127	E25_Aa	NovelBoundary	0	0.00	0.00	5.29	12.18	13.90	0.00
128	ER25a	ExonRegion	0	8.41	11.44	21.25	36.60	3.65	0.88
129	E25_Da	NovelBoundary	0	6.33	0.00	3.36	5.06	19.89	0.00
130	E25a_E26a	KnownJunction	0	14.22	20.30	37.17	33.28	0.00	0.00
131	ER26a	ExonRegion	1	8.75	25.51	39.25	40.21	0.00	0.25
132	E26a_E27a	KnownJunction	0	17.59	33.80	85.27	53.56	0.00	3.61
133	E27_Aa	NovelBoundary	0	0.00	0.00	4.95	15.33	0.00	0.00
134	ER27a	ExonRegion	0	9.79	19.24	58.57	40.08	3.81	1.14
135	E27a_E28a	KnownJunction	0	15.43	17.77	45.83	23.87	8.66	0.00
136	E28_Aa	NovelBoundary	0	6.51	0.00	10.25	10.11	0.00	0.00
137	ER28a	ExonRegion	0	10.30	19.88	66.26	49.68	2.24	1.08
138	E28a_E29a	KnownJunction	0	15.55	22.10	44.86	40.83	0.00	0.00
139	E28a_E29b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
140	ER29a	ExonRegion	0	11.26	17.31	69.52	54.57	0.00	0.00
141	ER29b	ExonRegion	0	12.67	14.54	41.28	31.60	2.41	0.00
142	ER29c	ExonRegion	0	10.97	13.28	27.86	18.31	3.62	0.00
143	E29b_E30a	KnownJunction	0	6.27	12.09	38.20	18.54	8.82	0.00
144	ER30a	ExonRegion	0	10.03	9.00	49.97	28.18	3.62	0.00
145	ER30b	ExonRegion	0	11.25	12.08	58.35	35.35	0.74	0.00
146	E30b_E31a	KnownJunction	0	12.83	16.14	39.62	33.71	0.00	0.00
147	ER31a	ExonRegion	0	7.40	16.76	33.55	26.09	0.00	3.14
148	E31a_E32a	KnownJunction	0	15.67	2.36	41.73	25.77	0.00	8.14
149	I31	Intron	0	1.07	2.10	13.04	7.90	0.57	0.94
150	I31_SR1	SilentIntronRegion	0	1.07	2.10	13.06	7.91	0.57	0.94
151	E32_Aa	NovelBoundary	0	5.36	5.06	37.74	15.50	0.00	0.00
152	ER32a	ExonRegion	0	14.27	6.25	69.71	64.33	0.00	0.78
153	E32a_E33a	KnownJunction	0	22.66	26.27	136.74	94.94	0.00	0.00
154	ER33a	ExonRegion	0	11.30	17.00	62.92	46.42	0.00	0.52
155	E33a_E34a	KnownJunction	0	22.78	13.61	80.38	67.53	0.00	3.78
156	ER34a	ExonRegion	0	11.10	18.04	53.31	44.71	1.00	0.17
157	E34a_E35a	KnownJunction	0	13.14	15.58	93.30	50.62	0.00	5.21
158	ER35a	ExonRegion	1	6.12	23.38	44.09	30.38	2.25	2.91
159	E35a_E36a	KnownJunction	1	6.33	32.68	55.84	36.32	8.32	12.43
160	ER36a	ExonRegion	0	14.63	10.32	42.22	25.27	0.74	0.22
161	E36a_E37b	KnownJunction	0	32.30	22.16	97.57	56.71	0.00	0.00
162	ER37a	ExonRegion	0	1.95	2.45	10.00	5.28	0.00	0.18
163	E37_Ab	KnownBoundary	0	3.49	0.00	36.26	12.72	0.00	0.00
164	ER37b	ExonRegion	0	9.22	6.55	49.08	25.48	0.76	0.00
165	E37_Da	NovelBoundary	0	0.00	0.00	13.15	0.00	0.00	0.00
166	E37a_E38a	KnownJunction	0	23.74	12.26	104.74	40.40	0.00	0.00
167	ER38a	ExonRegion	0	7.35	6.06	36.12	16.23	0.03	0.03
168	E38a_E39a	KnownJunction	0	15.85	6.24	37.17	27.46	0.00	0.00
169	ER39a	ExonRegion	0	1.38	0.53	1.40	0.81	0.28	0.29
170	E39_Da	KnownBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00
171	ER39b	ExonRegion	0	1.79	0.91	0.00	0.00	10.78	4.00