Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	ATPAF1	Gene	0	26.36	9.33	16.46	5.91	22.78	4.64
2	329231	Transcript	0	23.44	2.92	5.42	2.96	30.18	2.60
3	371937	Transcript	0	94.54	29.25	31.80	10.22	131.02	19.90
4	487193	Transcript	0	0.03	0.00	0.63	2.41	0.02	2.57
5	474020	Transcript	0	12.50	3.92	9.34	7.20	15.44	9.51
6	460928	Transcript	0	2.02	2.43	9.83	3.20	0.38	0.00
7	492233	Transcript	0	26.45	0.00	19.87	3.04	39.79	7.81
8	ER1a	ExonRegion	0	0.00	0.00	3.90	0.00	1.02	0.00
9	E1_Ab	KnownBoundary	0	0.00	0.00	2.68	0.00	5.16	0.00
10	ER1b	ExonRegion	0	0.98	0.85	1.33	0.88	3.91	0.00
11	E1_Ac	KnownBoundary	0	7.47	2.64	9.45	2.83	4.25	0.00
12	ER1c	ExonRegion	0	17.49	7.75	6.46	0.52	7.21	0.00
13	E1_Ad	KnownBoundary	0	6.87	8.83	9.68	0.00	9.99	0.00
14	E1_Ae	KnownBoundary	0	57.12	30.88	32.85	2.72	34.71	0.00
15	ER1d	ExonRegion	0	38.91	23.15	24.52	4.31	21.70	0.00
16	ER1e	ExonRegion	0	42.60	37.44	33.70	8.90	29.65	1.07
17	E1a_E2a	KnownJunction	0	36.88	53.26	30.57	15.77	73.33	3.69
18	I1_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	6.46	0.00	0.00
19	ER2a	ExonRegion	0	55.15	52.61	55.31	22.67	79.83	11.28
20	E2_Da	KnownBoundary	0	0.00	0.00	2.73	4.57	0.00	0.00
21	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
22	E2a_E4a	KnownJunction	0	89.36	57.48	71.27	14.57	209.84	35.26
23	ER2b	ExonRegion	0	2.02	2.43	9.83	3.20	0.38	0.00
24	E3_Aa	NovelBoundary	0	7.47	7.99	5.58	0.00	0.00	4.11
25	ER3a	ExonRegion	0	0.09	0.00	1.89	7.22	0.06	7.71
26	E3_Da	NovelBoundary	0	3.74	3.32	0.00	13.16	9.57	12.17
27	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
28	ER4a	ExonRegion	0	105.69	46.48	60.28	17.11	158.15	23.01
29	E4_Da	NovelBoundary	0	0.00	0.00	29.54	11.36	0.00	0.00
30	E4a_E5a	KnownJunction	0	138.17	46.06	42.58	20.01	288.66	37.53
31	ER5a	ExonRegion	0	131.91	46.37	113.83	45.51	94.53	28.53
32	E5_Da	NovelBoundary	0	0.00	0.00	26.93	14.08	0.00	0.00
33	E5a_E6a	KnownJunction	0	188.54	46.35	235.39	80.36	202.18	78.67
34	I5_SR1	SilentIntronRegion	0	0.55	0.54	9.39	1.71	2.48	0.99
35	I5_SR3	SilentIntronRegion	0	1.38	1.41	9.90	6.67	0.00	0.00
36	E6_Aa	NovelBoundary	0	10.06	0.00	12.18	0.00	0.00	0.00
37	ER6a	ExonRegion	0	181.08	60.62	210.18	63.23	174.35	39.93
38	E6_Da	NovelBoundary	0	0.00	2.64	13.15	0.00	0.00	0.00
39	E6a_E7a	KnownJunction	0	195.77	64.40	139.81	37.95	400.11	55.33
40	E7_Aa	NovelBoundary	0	3.62	0.00	0.00	2.61	8.66	13.35
41	ER7a	ExonRegion	0	176.59	56.26	124.62	36.11	225.78	39.62
42	E7_Db	KnownBoundary	0	13.32	0.00	28.58	18.49	52.85	26.36
43	E7b_E8a	KnownJunction	0	171.13	56.41	61.42	20.44	260.69	39.80
44	E7b_E10a	KnownJunction	0	46.88	5.85	6.94	5.93	59.35	5.21
45	ER7b	ExonRegion	0	198.65	52.84	95.31	37.65	222.70	35.17
46	ER7c	ExonRegion	0	12.50	3.92	9.34	7.20	15.44	9.51
47	E7_Dc	NovelBoundary	0	10.42	10.46	9.91	0.00	14.90	4.62
48	I7_AR1	ActiveIntronRegion	0	3.11	0.00	15.35	1.58	2.66	0.91
49	E8_Aa	NovelBoundary	0	2.65	0.00	11.44	0.00	0.00	0.00
50	ER8a	ExonRegion	0	193.45	57.35	160.61	55.40	194.60	33.88
51	E8a_E9a	KnownJunction	0	175.71	57.76	79.47	36.48	216.16	39.54
52	I8	Intron	0	2.14	1.33	12.98	6.89	0.38	0.10
53	I8_SR1	SilentIntronRegion	0	1.68	1.00	12.80	3.44	0.00	0.28
54	I8_SR2	SilentIntronRegion	0	0.86	1.01	9.00	5.81	0.00	0.00
55	I8_AR1	ActiveIntronRegion	0	2.62	0.43	19.18	12.88	0.63	0.00
56	I8_SR3	SilentIntronRegion	0	2.64	2.59	9.01	6.17	0.74	0.00
57	E9_Aa	NovelBoundary	0	0.00	0.00	9.17	2.23	4.83	0.00
58	ER9a	ExonRegion	0	221.34	79.00	94.62	29.28	149.81	34.18
59	E9_Da	NovelBoundary	0	3.56	0.00	13.83	6.74	0.00	0.00
60	E9a_E10a	KnownJunction	0	385.88	112.21	94.55	41.98	505.57	104.27
61	E10_Aa	NovelBoundary	0	16.15	0.00	21.75	6.74	10.32	0.00
62	ER10a	ExonRegion	0	262.26	78.02	90.54	40.32	198.44	38.45
63	E10_Da	KnownBoundary	0	109.06	31.50	52.88	23.43	259.28	47.60
64	E10a_E10b	KnownJunction	0	26.45	0.00	19.87	3.04	39.79	7.81
65	ER10b	ExonRegion	0	10.69	2.55	3.29	1.22	6.75	1.15
66	E10_Ab	KnownBoundary	0	3.13	0.00	2.73	0.00	9.32	0.00
67	ER10c	ExonRegion	0	9.64	1.04	4.72	0.96	6.24	1.15
68	E10_Db	KnownBoundary	0	13.98	2.87	12.52	6.25	30.21	0.00
69	ER10d	ExonRegion	0	4.08	0.67	0.43	0.08	3.99	1.05
70	ER10e	ExonRegion	0	17.95	2.08	2.17	0.00	1.36	0.00