Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	BPTF	Gene	0	71.34	75.95	89.50	119.48	122.37	167.40
2	306378	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
3	335221	Transcript	0	0	0	0	0	0	0
4	424123	Transcript	1	3.25	0.00	3.53	5.44	62.84	25.94
5	321892	Transcript	0	0	0	0	0	0	0
6	467104	Transcript	0	7.10	2.29	4.56	3.37	0.02	0.02
7	342579	Transcript	1	74.98	52.14	56.18	105.84	76.94	24.69
8	321866	Transcript	0	43.83	88.53	54.76	107.66	5.08	42.94
9	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
10	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
11	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00
12	ER1c	ExonRegion	0	9.10	6.91	9.30	10.68	1.10	1.79
13	E1_Da	NovelBoundary	0	60.50	23.34	25.90	14.35	0.00	0.00
14	E1a_E2a	KnownJunction	0	61.40	35.32	49.81	35.12	8.91	24.35
15	I1_AR7	ActiveIntronRegion	0	1.36	3.11	6.05	1.84	79.32	50.72
16	ER2a	ExonRegion	1	53.36	45.03	69.62	79.80	36.63	175.72
17	E2a_E3a	KnownJunction	0	154.80	79.59	157.34	169.48	134.92	219.80
18	ER3a	ExonRegion	0	90.83	87.38	151.04	159.35	87.99	107.63
19	E3a_E4a	KnownJunction	0	98.40	132.12	172.48	186.50	255.12	294.94
20	ER4a	ExonRegion	0	85.10	104.04	192.65	205.65	167.16	144.75
21	E4a_E5a	KnownJunction	0	98.88	133.70	200.66	229.56	271.68	261.36
22	E4a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
23	ER5a	ExonRegion	0	51.04	92.61	110.25	114.82	166.36	125.85
24	E5a_E7a	KnownJunction	0	54.41	65.24	44.86	73.57	267.44	220.39
25	E5a_E8a	KnownJunction	0	3.25	0.00	3.53	5.44	62.84	25.94
26	E6_Aa	NovelBoundary	0	291.34	245.34	77.76	23.54	1241.62	1049.71
27	ER6a	ExonRegion	0	2.09	0.00	0.00	0.00	0.10	0.11
28	E6_Da	NovelBoundary	1	7.05	57.09	26.36	5.60	40.70	20.40
29	E6a_E9a	KnownJunction	0	40.49	13.72	27.38	20.23	0.00	0.00
30	ER7a	ExonRegion	0	40.76	57.13	58.46	58.52	183.11	138.64
31	E7a_E8a	KnownJunction	0	40.01	51.80	75.77	43.28	288.91	247.84
32	Ix_AR5	ActiveIntronRegion	0	18.47	15.69	23.63	11.33	51.86	29.00
33	E8_Aa	NovelBoundary	0	19.94	0.00	28.35	7.83	82.90	42.57
34	ER8a	ExonRegion	0	62.95	55.85	83.19	91.73	319.92	302.06
35	E8a_E9a	KnownJunction	0	64.84	81.05	75.48	105.27	1242.79	1289.57
36	ER9a	ExonRegion	0	95.95	61.60	95.78	110.02	842.60	924.08
37	E9a_E10a	KnownJunction	0	134.43	78.01	128.71	109.94	1404.18	2563.19
38	ER10a	ExonRegion	0	175.37	94.75	95.16	92.16	787.05	1205.37
39	E10a_E11a	KnownJunction	0	313.03	159.46	100.19	115.81	1597.54	1865.76
40	E10a_E33a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
41	Ix_AR1	ActiveIntronRegion	0	9.19	6.96	3.64	0.72	54.71	39.72
42	ER11a	ExonRegion	0	162.33	101.62	60.53	56.52	158.32	265.83
43	E11a_E12a	KnownJunction	1	218.43	116.48	56.01	54.43	50.86	416.84
44	ER12a	ExonRegion	1	158.64	84.15	80.68	69.15	24.51	156.78
45	E12a_E13a	KnownJunction	1	115.03	38.30	119.15	60.46	35.38	376.80
46	E12a_E14a	NovelJunction	0	0.00	0.00	0.00	8.92	0.00	10.41
47	E13_Aa	NovelBoundary	0	3.74	5.79	38.54	14.57	0.00	22.25
48	ER13a	ExonRegion	1	79.73	38.83	90.50	87.59	7.89	136.93
49	E13a_E14a	KnownJunction	1	59.71	34.14	69.68	78.95	4.41	233.65
50	E14_Aa	NovelBoundary	1	6.69	3.43	42.52	17.89	0.00	97.64
51	ER14a	ExonRegion	1	32.78	43.31	116.63	125.32	3.09	56.74
52	E14a_E15a	KnownJunction	1	45.07	62.32	37.34	86.40	9.66	61.20
53	ER15a	ExonRegion	0	29.86	52.44	69.22	86.74	2.72	21.71
54	E15a_E16a	KnownJunction	1	45.07	70.81	94.33	111.30	0.00	41.64
55	ER16a	ExonRegion	0	51.82	78.61	90.20	119.79	3.04	26.68
56	E16a_E17a	KnownJunction	1	50.31	123.40	173.28	213.36	10.24	59.36
57	ER17a	ExonRegion	1	51.34	99.87	142.51	155.79	6.61	45.36
58	E17a_E18a	KnownJunction	1	39.83	90.67	115.22	108.69	8.91	140.38
59	E17a_E19a	NovelJunction	0	2.83	13.72	5.92	15.93	0.00	0.00
60	ER18a	ExonRegion	1	38.35	93.92	104.33	108.26	2.90	32.63
61	E18a_E19a	KnownJunction	0	52.72	94.32	102.24	100.37	4.16	9.24
62	ER19a	ExonRegion	0	44.59	78.12	95.56	141.85	3.50	8.06
63	E19a_E20a	KnownJunction	0	54.77	81.44	88.46	143.27	5.08	17.21
64	ER20a	ExonRegion	0	47.77	76.60	85.99	113.42	9.81	18.18
65	E20a_E21a	KnownJunction	0	96.89	101.52	99.39	188.24	31.63	53.48
66	ER21a	ExonRegion	0	67.78	102.26	120.03	155.58	14.60	15.32
67	E21a_E22a	KnownJunction	0	33.62	76.61	50.78	100.10	0.00	9.40
68	Ix_SR1	SilentIntronRegion	0	16.26	9.09	2.95	3.68	14.20	14.17
69	Ix_AR1	ActiveIntronRegion	0	7.40	3.16	6.43	4.90	34.62	15.77
70	ER22a	ExonRegion	0	56.47	97.03	68.01	118.51	1.91	14.26
71	E22a_E23a	KnownJunction	0	46.04	93.76	49.01	102.28	0.00	16.20
72	ER23a	ExonRegion	1	34.98	92.80	36.64	76.83	0.00	12.52
73	E23_Ab	KnownBoundary	0	48.14	90.27	25.33	57.69	0.00	14.78
74	ER23b	ExonRegion	1	57.68	110.78	24.85	72.04	0.00	10.77
75	E23_Ac	KnownBoundary	0	75.68	131.16	44.34	75.52	0.00	27.20
76	ER23c	ExonRegion	0	57.51	105.10	32.97	74.11	0.00	16.20
77	E23_Da	NovelBoundary	0	14.40	32.34	8.88	5.65	0.00	0.00
78	E23a_E24a	KnownJunction	1	26.63	83.41	18.10	66.28	0.00	0.00
79	Ix	Intron	0	15.56	8.81	7.24	6.31	2.01	2.06
80	Ix_AR1	ActiveIntronRegion	0	16.89	9.17	8.09	8.02	2.24	2.55
81	E24_Aa	NovelBoundary	0	51.22	51.97	28.18	23.49	0.00	9.74
82	ER24a	ExonRegion	0	89.23	178.48	184.83	367.11	5.15	18.08
83	E24_Da	KnownBoundary	0	33.44	53.77	61.37	116.96	5.16	44.50
84	E24a_E24b	KnownJunction	1	87.13	177.06	109.52	214.77	10.15	85.89
85	E24_Ab	KnownBoundary	0	61.70	120.48	80.44	166.00	11.65	78.25
86	ER24b	ExonRegion	1	105.57	190.44	151.35	326.01	10.85	64.79
87	ER24c	ExonRegion	1	150.40	239.79	216.76	433.65	7.87	95.07
88	E24_Db	KnownBoundary	0	104.60	73.40	121.59	128.97	0.00	10.41
89	E24b_E25a	KnownJunction	1	82.31	206.08	146.24	339.78	22.39	123.67
90	ER24d	ExonRegion	0	56.12	61.66	86.82	134.96	3.80	30.18
91	E24c_E25a	KnownJunction	1	73.69	85.89	96.94	172.47	10.82	133.91
92	ER25a	ExonRegion	1	208.21	250.61	218.06	530.36	38.01	300.95
93	E25a_E26a	KnownJunction	1	271.15	301.08	243.01	579.24	76.16	949.88
94	E26_Aa	NovelBoundary	0	13.20	14.96	15.94	48.07	0.00	7.47
95	ER26a	ExonRegion	1	241.42	327.83	263.10	529.04	35.66	479.33
96	E26a_E27a	KnownJunction	1	169.62	274.31	152.73	252.83	77.08	787.01
97	Ix_AR2	ActiveIntronRegion	0	25.44	9.34	11.54	6.16	11.82	4.16
98	ER27a	ExonRegion	0	116.94	161.91	117.61	198.11	19.87	30.03
99	E27a_E28a	KnownJunction	1	53.27	40.50	28.86	107.71	39.62	17.71
100	E27a_E29a	KnownJunction	1	31.21	47.81	20.95	92.00	0.00	32.66
101	ER27b	ExonRegion	0	0.53	0.00	0.00	0.54	0.00	0.00
102	ER28a	ExonRegion	1	80.75	76.43	91.07	127.92	55.60	20.09
103	E28a_E29a	KnownJunction	1	90.93	39.48	48.61	81.89	135.59	36.27
104	ER29a	ExonRegion	0	114.44	117.13	101.25	180.40	158.12	99.14
105	E29_Da	NovelBoundary	0	28.80	11.76	14.17	12.89	88.65	48.44
106	E29a_E30a	KnownJunction	0	133.23	131.73	114.82	180.63	875.47	511.21
107	E29a_E31a	NovelJunction	0	0.00	0.00	0.00	0.00	18.06	4.11
108	ER30a	ExonRegion	0	107.68	99.70	114.94	223.00	318.06	226.00
109	E30a_E31a	KnownJunction	0	165.64	115.98	135.82	255.12	365.99	279.99
110	E30a_E32a	NovelJunction	0	0.00	0.00	0.00	0.00	9.32	13.27
111	ER31a	ExonRegion	0	168.99	129.82	147.46	276.95	417.54	357.46
112	E31_Da	NovelBoundary	0	17.96	10.57	2.68	3.04	73.08	49.37
113	E31a_E32a	KnownJunction	0	154.01	113.00	44.12	70.36	680.53	386.03
114	Ix_AR2	ActiveIntronRegion	0	13.97	5.00	8.44	16.25	29.29	27.77
115	Ix_AR4	ActiveIntronRegion	0	2.95	5.81	2.28	3.77	25.31	13.62
116	E32_Aa	NovelBoundary	0	19.70	29.30	3.24	9.03	166.80	95.79
117	ER32a	ExonRegion	0	181.03	134.40	82.53	69.50	613.51	639.06
118	E32_Da	KnownBoundary	0	11.09	26.04	10.13	11.36	56.60	32.24
119	ER32b	ExonRegion	0	33.00	23.21	10.05	7.62	65.21	74.01
120	ER32c	ExonRegion	0	1.06	4.16	0.00	0.00	0.00	0.00
121	ER33a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
122	E33a_E34a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
123	ER34a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00