Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	CNTNAP4	Gene	0	63.95	114.05	61.74	69.79	72.17	117.15
2	393364	Transcript	0	0	0	0	0	0	0
3	307431	Transcript	0	22.05	30.71	17.42	33.17	0.00	5.21
4	469589	Transcript	0	22.62	19.89	0.00	0.00	9.04	16.40
5	469667	Transcript	0	0	0	0	0	0	0
6	471618	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
7	463177	Transcript	0	0.00	0.00	0.00	0.00	0.00	3.80
8	339740	Transcript	0	0	0	0	0	0	0
9	478060	Transcript	0	0	0	0	0	0	0
10	476707	Transcript	0	0.56	3.05	2.05	2.39	3.29	3.82
11	393367	Transcript	0	0.00	0.00	1.90	0.00	0.00	0.69
12	ER1a	ExonRegion	0	12.18	27.26	21.39	21.41	0.46	0.49
13	E1_Ab	KnownBoundary	0	45.25	51.80	57.78	62.64	15.32	15.62
14	ER1b	ExonRegion	0	39.92	45.38	41.43	54.98	5.30	7.28
15	E1_Da	KnownBoundary	0	21.33	10.07	13.72	22.24	0.00	0.00
16	E1a_E1c	KnownJunction	0	22.05	30.71	17.42	33.17	0.00	5.21
17	E1_Ac	KnownBoundary	0	10.00	16.14	5.75	8.86	0.00	0.00
18	ER1c	ExonRegion	0	33.78	57.48	31.14	42.37	0.00	3.70
19	ER1d	ExonRegion	0	26.27	63.77	29.45	46.38	2.11	3.70
20	E1b_E3c	KnownJunction	1	16.51	82.85	24.99	44.04	8.32	4.53
21	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
22	E2a_E3c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
23	ER2b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
24	ER2c	ExonRegion	0	0.00	0.00	0.00	0.48	0.00	0.00
25	ER3a	ExonRegion	0	0.00	2.22	2.22	0.05	5.02	3.94
26	E3_Ac	KnownBoundary	0	0.00	0.00	0.00	3.04	0.00	5.21
27	ER3b	ExonRegion	0	0.00	0.00	2.17	2.15	1.81	3.70
28	ER3c	ExonRegion	0	1.13	3.88	1.88	4.74	1.57	3.70
29	ER3d	ExonRegion	0	36.43	64.20	54.19	61.26	8.76	3.60
30	E3b_E4a	KnownJunction	0	67.61	77.22	47.87	88.90	4.99	0.00
31	ER4a	ExonRegion	0	27.98	61.15	51.91	76.98	2.40	0.00
32	E4a_E5a	KnownJunction	0	49.35	20.81	65.12	92.65	0.00	0.00
33	ER5a	ExonRegion	0	31.40	75.07	106.48	154.52	1.86	1.66
34	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	4.53
35	E5a_E7a	KnownJunction	0	28.68	78.01	98.37	92.11	0.00	8.06
36	E5a_E13a	NovelJunction	0	0.00	8.61	0.00	0.00	0.00	0.00
37	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	3.06
38	ER7a	ExonRegion	0	26.78	75.84	119.23	135.22	3.61	4.00
39	E7a_E8a	KnownJunction	0	23.08	52.20	102.07	99.56	17.56	9.32
40	ER8a	ExonRegion	0	20.35	65.07	83.99	85.86	4.00	1.73
41	E8a_E9a	KnownJunction	0	26.75	57.88	85.50	107.77	9.82	8.82
42	E8a_E10a	KnownJunction	0	2.59	0.00	3.53	3.32	0.00	0.00
43	ER9a	ExonRegion	1	10.15	60.97	67.26	98.48	2.16	4.42
44	E9_Da	NovelBoundary	0	0.00	0.00	51.18	13.27	0.00	0.00
45	E9a_E10a	KnownJunction	1	21.57	96.91	228.78	189.49	5.16	14.19
46	ER10a	ExonRegion	0	21.02	73.10	100.35	101.15	1.46	8.07
47	E10a_E11a	KnownJunction	0	35.55	70.08	39.96	69.81	4.49	10.24
48	ER11a	ExonRegion	0	26.93	50.66	53.43	54.42	3.42	10.43
49	E11a_E12a	KnownJunction	0	24.95	63.95	31.71	75.85	8.99	26.11
50	ER12a	ExonRegion	0	34.26	57.29	57.95	84.88	8.37	21.02
51	E12a_E13a	KnownJunction	1	48.75	63.78	53.62	82.54	7.57	51.97
52	ER13a	ExonRegion	0	37.79	90.73	98.96	119.21	4.98	12.20
53	E13a_E14a	KnownJunction	0	43.44	121.66	126.77	144.20	29.80	33.75
54	ER14a	ExonRegion	0	38.29	77.61	90.29	97.73	7.31	7.11
55	E14a_E15a	KnownJunction	0	58.27	95.28	106.22	129.73	9.57	4.62
56	E15_Aa	NovelBoundary	0	6.63	18.95	21.40	28.93	0.00	23.59
57	ER15a	ExonRegion	0	53.01	99.41	69.34	88.64	4.46	6.50
58	E15a_E16a	KnownJunction	0	74.96	113.50	96.32	134.79	12.57	22.33
59	ER16a	ExonRegion	0	58.34	108.22	91.25	140.38	15.24	28.97
60	E16_Da	KnownBoundary	0	3.13	10.46	2.73	11.42	3.58	22.16
61	E16a_E17a	KnownJunction	0	61.04	110.97	101.90	130.93	3.58	21.49
62	ER16b	ExonRegion	0	1.22	2.03	2.60	2.92	7.48	14.64
63	ER17a	ExonRegion	0	51.61	90.45	104.04	136.31	15.10	11.24
64	E17a_E18a	KnownJunction	0	44.41	67.72	42.69	65.30	27.05	18.05
65	ER18a	ExonRegion	0	52.10	113.78	93.21	101.02	18.46	13.40
66	E18a_E19a	KnownJunction	0	41.15	53.04	41.27	55.13	40.70	31.65
67	ER19a	ExonRegion	0	49.18	91.24	60.36	79.20	15.90	10.70
68	E19_Da	NovelBoundary	1	22.72	0.00	47.93	25.07	5.16	0.00
69	E19a_E20a	KnownJunction	0	38.02	120.59	22.49	42.30	19.14	5.21
70	E19a_E21a	NovelJunction	0	0.00	2.70	0.00	6.14	0.00	0.00
71	I19_SR1	SilentIntronRegion	0	4.28	1.90	5.88	4.61	18.50	10.89
72	I19_AR1	ActiveIntronRegion	0	2.12	0.44	5.23	4.73	207.88	165.46
73	I19_AR2	ActiveIntronRegion	0	7.64	1.73	16.09	11.59	0.78	3.35
74	I19_AR3	ActiveIntronRegion	1	27.11	21.27	13.88	51.76	5.61	162.92
75	ER20a	ExonRegion	0	43.25	105.69	63.09	71.09	22.31	22.62
76	E20a_E21a	KnownJunction	0	46.70	123.35	38.77	76.39	74.00	41.56
77	ER21a	ExonRegion	0	50.55	141.08	61.31	71.36	48.36	63.45
78	E21a_E22a	KnownJunction	0	73.75	179.03	19.01	42.68	115.78	155.40
79	E21b_E22b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
80	ER21b	ExonRegion	0	0.00	0.00	3.80	0.00	0.00	1.39
81	ER22a	ExonRegion	1	55.74	156.23	20.86	55.15	54.24	69.61
82	ER22b	ExonRegion	0	80.71	178.62	61.72	73.63	49.94	69.31
83	E22a_E23a	KnownJunction	0	160.40	265.08	104.74	59.10	97.64	113.84
84	ER23a	ExonRegion	0	115.50	224.75	99.32	84.63	58.55	78.87
85	E23a_E24a	KnownJunction	0	132.62	236.06	121.82	84.55	170.80	254.72
86	I23_AR1	ActiveIntronRegion	0	2.27	0.00	6.72	5.38	49.98	56.47
87	E24_Aa	NovelBoundary	0	0.00	0.00	31.65	10.49	0.00	0.00
88	ER24a	ExonRegion	0	123.06	222.54	85.07	75.06	83.37	134.47
89	E24a_E25a	KnownJunction	0	147.21	272.51	107.36	79.98	328.95	311.56
90	ER25a	ExonRegion	0	111.02	223.48	49.24	31.51	129.45	191.65
91	E25a_E26a	KnownJunction	0	148.29	259.74	49.01	26.70	154.98	394.51
92	I25	Intron	0	7.71	6.00	13.26	10.72	5.46	6.31
93	I25_AR1	ActiveIntronRegion	0	5.24	3.42	16.50	14.36	1.78	6.97
94	I25_AR2	ActiveIntronRegion	0	24.41	20.95	8.82	6.09	24.01	5.46
95	E26_Aa	NovelBoundary	0	61.22	21.32	33.24	3.21	15.73	18.55
96	ER26a	ExonRegion	0	204.98	252.61	79.81	51.24	193.98	327.03
97	E26_Da	KnownBoundary	0	311.89	458.40	191.84	96.89	502.08	927.38
98	ER26b	ExonRegion	0	274.66	384.82	42.29	33.77	488.40	784.64
99	E26_Db	KnownBoundary	0	190.47	353.28	19.35	10.93	878.63	919.07
100	ER26c	ExonRegion	0	172.94	239.79	24.11	20.80	505.74	890.89
101	ER26d	ExonRegion	0	22.62	19.89	0.00	0.00	9.04	16.40
102	IG28_AR1	ActiveIntergenicRegion	0	3.82	2.08	1.25	1.82	15.85	12.46
103	IG28_SR1	SilentIntergenicRegion	0	12.65	12.38	6.67	10.59	55.56	89.54
104	IG28_SR2	SilentIntergenicRegion	0	28.28	9.01	20.22	12.02	18.13	14.14
105	IG28_AR2	ActiveIntergenicRegion	0	48.51	16.31	4.78	2.49	62.51	42.14
106	IG28_AR3	ActiveIntergenicRegion	0	2.88	0.68	13.21	8.40	0.00	0.00
107	IG28_AR20	ActiveIntergenicRegion	0	3.77	0.00	0.31	0.00	26.68	0.52