Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	CDKL1	Gene	0	6.42	2.28	9.42	2.11	3.76	1.20
2	356146	Transcript	0	0.80	0.48	0.73	0.38	0.20	0.04
3	216378	Transcript	0	0	0	0	0	0	0
4	395834	Transcript	0	0.23	0.00	1.36	0.40	0.34	0.00
5	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
6	E1_Da	NovelBoundary	0	19.64	14.62	13.72	0.00	29.30	23.93
7	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
8	I1_SR2	SilentIntronRegion	0	8.45	0.00	0.00	6.46	0.00	0.00
9	I1_AR4	ActiveIntronRegion	0	9.24	1.56	0.54	6.46	0.00	0.00
10	I1_SR3	SilentIntronRegion	0	10.56	4.16	2.17	6.46	0.00	0.00
11	I1_AR5	ActiveIntronRegion	0	12.14	4.16	2.17	6.46	0.00	0.00
12	I1_AR6	ActiveIntronRegion	0	15.48	4.16	7.97	10.77	0.00	0.00
13	I1_AR7	ActiveIntronRegion	0	18.74	8.31	10.86	8.08	0.00	0.00
14	I1_AR8	ActiveIntronRegion	0	10.82	2.87	3.53	3.96	0.40	1.65
15	E2_Aa	NovelBoundary	0	5.72	0.00	5.98	9.84	0.00	0.00
16	ER2a	ExonRegion	0	0.79	0.00	1.63	0.80	0.00	0.00
17	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
18	ER3a	ExonRegion	0	0.00	0.00	0.00	0.04	0.00	0.00
19	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
20	ER4a	ExonRegion	0	0.01	0.00	1.47	0.00	0.03	0.00
21	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
22	E5_Aa	NovelBoundary	0	27.72	13.61	2.56	5.27	57.43	29.80
23	E5_Ab	NovelBoundary	0	6.69	13.78	8.25	0.00	9.66	4.28
24	ER5a	ExonRegion	0	3.00	7.59	4.60	1.82	4.38	0.00
25	ER5b	ExonRegion	0	15.30	8.85	12.78	9.13	8.88	0.22
26	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
27	E5a_E14a	KnownJunction	0	3.74	18.00	5.81	11.20	22.22	4.62
28	E6_Aa	NovelBoundary	0	9.70	0.00	5.18	2.34	0.00	0.00
29	ER6a	ExonRegion	0	2.74	0.90	1.86	0.00	0.00	0.00
30	E6_Da	NovelBoundary	0	7.35	0.00	24.42	0.00	0.00	0.00
31	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
32	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
33	E7_Da	NovelBoundary	0	8.68	2.42	10.47	0.00	0.00	0.00
34	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
35	ER8a	ExonRegion	0	3.74	0.00	1.29	2.56	0.00	0.00
36	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
37	ER9a	ExonRegion	0	1.89	1.85	3.22	1.28	0.00	0.00
38	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
39	ER10a	ExonRegion	0	0.00	0.00	1.74	0.85	1.44	0.74
40	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
41	E11_Aa	NovelBoundary	0	0.00	0.00	9.79	0.00	0.00	0.00
42	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
43	E11_Da	NovelBoundary	0	0.00	0.00	9.28	0.00	0.00	0.00
44	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
45	E12_Aa	NovelBoundary	0	5.78	6.52	3.30	6.04	0.00	0.00
46	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
47	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
48	E13_Aa	NovelBoundary	0	595.51	259.52	1012.48	491.26	805.22	311.06
49	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
50	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
51	E14_Aa	NovelBoundary	0	3.31	0.00	5.24	0.00	10.24	4.28
52	ER14a	ExonRegion	0	24.87	7.27	14.83	3.25	19.12	3.14
53	E14_Da	NovelBoundary	0	20.61	16.03	9.62	0.00	19.73	0.00
54	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
55	E14a_E16a	KnownJunction	0	9.76	0.00	3.07	6.09	15.48	0.00
56	I14_AR1	ActiveIntronRegion	0	12.14	2.48	5.07	1.93	1.08	0.55
57	E15_Aa	NovelBoundary	0	6.21	0.00	0.00	2.94	9.49	8.14
58	ER15a	ExonRegion	0	1.38	1.30	4.02	0.00	0.00	0.00
59	E15_Da	NovelBoundary	0	20.13	3.26	8.60	0.00	0.00	0.00
60	E15a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
61	I15_AR2	ActiveIntronRegion	0	5.28	0.00	8.69	0.00	5.42	6.74
62	I15_AR3	ActiveIntronRegion	0	4.72	0.93	5.52	0.97	38.95	13.14
63	I15_AR5	ActiveIntronRegion	0	7.35	0.78	3.18	1.96	13.37	4.42
64	E16_Aa	NovelBoundary	0	11.03	3.32	12.24	0.00	120.19	47.02
65	ER16a	ExonRegion	0	16.54	0.09	5.15	3.98	13.03	1.85
66	E16_Da	NovelBoundary	0	3.62	3.04	3.53	0.00	49.36	23.34
67	E16a_E18a	KnownJunction	0	27.60	0.00	5.52	3.37	11.99	0.00
68	I16	Intron	0	12.09	3.54	4.42	1.63	42.01	8.67
69	I16_SR1	SilentIntronRegion	0	8.25	1.37	4.73	2.20	33.54	6.70
70	I16_AR2	ActiveIntronRegion	0	21.46	8.51	4.40	0.47	65.07	13.91
71	E17_Aa	NovelBoundary	0	13.98	0.00	2.33	0.00	0.00	0.00
72	ER17a	ExonRegion	0	9.40	4.13	2.22	0.00	0.00	0.00
73	E17_Da	NovelBoundary	0	30.97	0.00	0.00	0.00	0.00	0.00
74	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
75	I17_SR1	SilentIntronRegion	0	10.70	8.12	4.64	1.05	0.00	0.00
76	E18_Aa	NovelBoundary	0	9.94	3.49	9.79	0.00	4.58	0.00
77	ER18a	ExonRegion	0	18.86	4.91	13.78	0.83	6.10	0.00
78	E18a_E19a	KnownJunction	0	9.64	5.57	36.38	0.00	10.90	0.00
79	ER19a	ExonRegion	0	19.24	4.12	21.07	2.56	10.47	4.19
80	E19a_E20a	KnownJunction	0	18.80	0.00	30.57	6.58	23.14	13.85
81	ER20a	ExonRegion	0	11.50	6.91	41.30	5.32	21.70	9.46
82	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
83	E20a_E22a	KnownJunction	0	16.03	4.72	60.40	11.96	20.56	27.12
84	ER21a	ExonRegion	0	3.52	0.00	2.17	5.03	0.59	0.62
85	E21_Da	NovelBoundary	0	10.36	0.00	0.00	0.00	5.16	0.00
86	Ix	Intron	0	15.65	9.31	4.70	1.33	3.91	4.29
87	Ix_AR1	ActiveIntronRegion	0	20.51	11.66	6.10	1.86	5.07	5.60
88	E22_Aa	NovelBoundary	0	32.12	10.07	3.53	6.04	13.65	9.57
89	ER22a	ExonRegion	0	14.78	5.10	42.15	10.36	9.01	8.51
90	E22_Da	NovelBoundary	0	58.57	25.87	30.97	2.83	38.04	4.62
91	E22a_E23a	KnownJunction	0	20.91	10.07	31.37	8.10	19.56	13.27
92	E22a_E24a	NovelJunction	0	0.00	0.00	10.13	2.61	0.00	8.40
93	Ix	Intron	0	11.10	5.52	13.11	4.89	10.80	7.09
94	Ix_AR2	ActiveIntronRegion	0	19.02	8.03	2.80	1.39	6.99	4.75
95	Ix_SR1	SilentIntronRegion	0	10.85	5.29	13.78	5.68	11.90	7.91
96	Ix_AR1	ActiveIntronRegion	0	3.84	4.89	19.60	1.34	4.45	1.75
97	E23_Aa	NovelBoundary	0	35.73	2.92	29.77	15.55	0.00	0.00
98	ER23a	ExonRegion	0	27.13	12.60	69.48	7.14	15.37	8.66
99	E23_Da	NovelBoundary	0	13.38	0.00	6.55	6.69	27.47	13.18
100	E23a_E24a	KnownJunction	0	12.17	0.00	72.30	12.67	9.32	5.21
101	Ix	Intron	0	14.63	7.60	12.22	9.30	3.07	0.24
102	Ix_AR2	ActiveIntronRegion	0	10.31	6.10	7.96	7.82	9.40	1.48
103	Ix_SR1	SilentIntronRegion	0	17.08	9.01	14.79	9.84	1.86	0.00
104	Ix_AR1	ActiveIntronRegion	0	13.78	6.69	11.19	9.39	1.82	0.00
105	E24_Aa	NovelBoundary	0	9.28	0.00	14.17	15.39	33.79	9.40
106	ER24a	ExonRegion	0	7.74	1.58	23.70	2.81	6.96	1.14
107	E24_Da	KnownBoundary	0	3.74	3.37	35.81	3.37	5.16	4.37
108	ER24b	ExonRegion	0	0.23	0.00	1.36	0.40	0.34	0.00