Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	NPAS3	Gene	0	45.42	31.31	22.73	18.39	117.01	117.23
2	346562	Transcript	0	2.15	1.34	3.51	2.74	0.35	1.39
3	341321	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00
4	356141	Transcript	0	0	0	0	0	0	0
5	427427	Transcript	0	0	0	0	0	0	0
6	426553	Transcript	0	0	0	0	0	0	0
7	357798	Transcript	0	0	0	0	0	0	0
8	IG27_AR1	ActiveIntergenicRegion	0	34.53	9.68	40.32	18.74	63.08	20.99
9	IG27_SR1	SilentIntergenicRegion	0	34.22	7.69	21.86	14.39	76.74	16.76
10	IG27_SR2	SilentIntergenicRegion	0	2.74	0.00	12.00	0.70	1.76	1.20
11	IG27_AR2	ActiveIntergenicRegion	0	5.11	2.69	21.56	4.47	7.33	3.67
12	IG27_AR4	ActiveIntergenicRegion	0	36.19	12.16	15.06	5.01	95.14	38.66
13	IG27_AR7	ActiveIntergenicRegion	0	0.86	0.84	3.04	0.00	6.01	6.32
14	ER1a	ExonRegion	0	2.79	4.02	0.00	1.75	1.04	0.15
15	E1_Ab	KnownBoundary	0	6.45	16.31	0.00	6.36	5.16	0.00
16	ER1b	ExonRegion	0	3.71	3.39	7.45	9.58	2.55	2.38
17	E1_Da	NovelBoundary	1	0.00	15.52	0.00	0.00	0.00	0.00
18	E1a_E2a	KnownJunction	0	0.00	0.00	3.53	5.60	0.00	0.00
19	E1a_E3c	KnownJunction	0	3.68	0.00	10.53	6.47	0.00	4.03
20	I1	Intron	0	4.70	2.85	10.75	7.25	6.29	6.98
21	I1_SR1	SilentIntronRegion	0	12.07	8.75	11.52	7.55	0.21	0.54
22	I1_AR1	ActiveIntronRegion	0	2.11	6.07	21.88	19.34	0.00	1.62
23	I1_SR2	SilentIntronRegion	0	3.22	1.46	14.66	9.16	3.46	3.14
24	I1_AR2	ActiveIntronRegion	0	8.63	5.88	11.21	3.35	13.52	19.96
25	I1_SR3	SilentIntronRegion	0	3.93	1.35	12.35	8.38	10.85	7.04
26	I1_AR3	ActiveIntronRegion	0	11.71	6.72	12.29	9.19	73.98	40.24
27	I1_SR4	SilentIntronRegion	0	6.68	4.95	11.02	7.37	0.00	0.67
28	I1_AR4	ActiveIntronRegion	0	1.48	0.00	13.17	17.74	1.25	7.41
29	I1_SR5	SilentIntronRegion	0	7.54	2.66	12.35	9.71	5.27	6.02
30	I1_AR5	ActiveIntronRegion	0	27.79	11.76	16.45	10.52	121.15	91.44
31	I1_SR6	SilentIntronRegion	0	3.02	1.80	9.61	6.73	2.12	3.80
32	I1_AR6	ActiveIntronRegion	0	8.50	1.48	6.17	6.63	25.26	11.83
33	I1_SR7	SilentIntronRegion	0	4.36	2.60	10.57	7.08	6.70	10.90
34	I1_AR7	ActiveIntronRegion	0	5.45	0.00	9.74	9.95	0.00	21.01
35	I1_AR8	ActiveIntronRegion	0	2.08	3.32	10.93	6.62	0.00	2.79
36	I1_AR9	ActiveIntronRegion	0	2.02	4.54	6.25	7.45	0.00	0.00
37	I1_AR10	ActiveIntronRegion	0	23.00	15.70	8.77	2.97	38.30	18.98
38	I1_SR9	SilentIntronRegion	0	24.43	20.78	15.21	1.54	86.27	46.28
39	I1_AR11	ActiveIntronRegion	0	30.07	18.04	13.46	2.68	102.09	46.96
40	I1_SR10	SilentIntronRegion	0	2.67	1.93	11.45	7.57	2.14	2.47
41	I1_AR12	ActiveIntronRegion	0	1.53	1.59	9.78	6.62	0.00	0.00
42	I1_SR11	SilentIntronRegion	0	2.30	1.20	21.09	7.74	0.00	0.00
43	I1_SR12	SilentIntronRegion	0	0.78	1.70	11.96	5.49	0.00	0.00
44	I1_AR13	ActiveIntronRegion	0	0.92	1.28	9.53	4.18	0.90	0.00
45	I1_AR14	ActiveIntronRegion	0	1.93	2.59	4.70	5.02	41.69	31.13
46	E2_Aa	NovelBoundary	0	9.58	5.79	34.38	25.34	115.95	66.75
47	ER2a	ExonRegion	0	8.77	3.46	11.66	19.17	66.17	62.20
48	E2_Da	NovelBoundary	0	8.92	5.85	14.57	4.78	69.17	158.43
49	E2a_E3c	KnownJunction	0	0.00	0.00	9.68	10.71	0.00	5.12
50	I2_AR1	ActiveIntronRegion	0	4.04	4.14	8.69	2.87	53.02	76.50
51	I2_SR1	SilentIntronRegion	0	1.10	0.91	9.31	4.50	4.31	4.08
52	I2_AR2	ActiveIntronRegion	0	0.80	0.39	11.70	5.34	20.14	16.87
53	I2_SR2	SilentIntronRegion	0	4.09	2.83	10.71	7.09	10.65	2.17
54	I2_AR3	ActiveIntronRegion	0	14.10	16.99	7.40	3.80	55.00	47.72
55	I2_AR4	ActiveIntronRegion	0	29.67	17.49	12.27	2.43	0.00	0.52
56	I2_SR3	SilentIntronRegion	0	1.75	1.27	10.51	6.49	1.05	0.33
57	I2_AR6	ActiveIntronRegion	0	12.82	7.81	10.20	5.44	65.65	124.94
58	I2_AR7	ActiveIntronRegion	0	5.36	1.79	4.16	7.07	1.83	0.06
59	I2_SR5	SilentIntronRegion	0	4.39	2.13	9.30	6.10	2.96	1.77
60	I2_AR10	ActiveIntronRegion	0	0.54	1.87	10.83	3.80	0.00	0.00
61	ER3a	ExonRegion	0	0.00	0.00	2.17	0.00	0.00	0.00
62	ER3b	ExonRegion	0	4.22	2.08	19.55	19.39	12.66	20.36
63	ER3c	ExonRegion	0	9.00	18.43	112.41	97.70	4.08	4.23
64	E3a_E4a	KnownJunction	1	3.37	15.24	45.60	83.63	4.25	4.70
65	E3a_E5a	KnownJunction	0	11.75	8.38	60.57	47.25	7.82	8.73
66	E3a_E5b	KnownJunction	0	2.59	3.49	12.30	2.83	0.00	0.00
67	ER4a	ExonRegion	0	2.19	4.60	47.20	49.08	0.71	1.85
68	E4_Da	NovelBoundary	0	0.00	0.00	0.00	9.73	0.00	9.32
69	E4a_E5a	KnownJunction	0	0.00	0.00	44.46	21.26	0.00	0.00
70	E4a_E5b	NovelJunction	0	0.00	0.00	12.35	8.32	0.00	0.00
71	I4_AR1	ActiveIntronRegion	0	0.38	0.74	10.95	4.19	0.32	2.32
72	ER5a	ExonRegion	0	11.46	12.76	109.25	63.40	3.62	3.97
73	ER5b	ExonRegion	0	11.08	20.97	69.18	43.96	2.66	4.92
74	E5a_E6a	KnownJunction	0	10.30	15.41	48.16	33.28	0.00	4.45
75	I5_SR1	SilentIntronRegion	0	4.16	0.44	5.71	2.26	31.70	16.35
76	I5_AR1	ActiveIntronRegion	0	18.72	12.65	6.10	3.28	155.00	185.27
77	I5_SR4	SilentIntronRegion	0	0.50	0.29	7.05	5.18	7.04	5.62
78	I5_AR5	ActiveIntronRegion	0	1.20	0.00	4.36	1.86	27.01	42.57
79	I5_AR6	ActiveIntronRegion	0	8.66	2.08	9.56	4.31	101.61	62.02
80	I5_SR7	SilentIntronRegion	0	10.56	2.08	5.90	4.31	92.21	59.50
81	I5_AR7	ActiveIntronRegion	0	10.56	2.08	4.35	4.31	84.72	58.71
82	I5_AR8	ActiveIntronRegion	0	4.07	2.60	6.71	1.21	80.12	56.27
83	I5_AR12	ActiveIntronRegion	0	1.79	0.70	2.58	2.19	79.13	76.94
84	I5_AR14	ActiveIntronRegion	0	0.44	0.00	6.51	8.20	0.00	1.08
85	I5_AR17	ActiveIntronRegion	0	2.70	0.96	3.09	1.75	45.79	35.40
86	ER6a	ExonRegion	0	12.01	13.13	70.34	37.36	2.91	4.34
87	E6_Da	NovelBoundary	0	3.74	0.00	18.56	2.45	10.49	7.14
88	E6a_E7a	KnownJunction	0	13.02	23.29	59.32	36.65	8.74	4.03
89	I6_AR2	ActiveIntronRegion	0	1.40	0.95	9.93	4.98	0.00	0.00
90	I6_AR5	ActiveIntronRegion	0	1.35	0.00	3.22	2.77	25.47	4.82
91	I6_AR8	ActiveIntronRegion	0	9.67	4.73	5.57	1.71	38.76	23.00
92	I6_SR8	SilentIntronRegion	0	9.65	14.54	6.52	2.15	54.50	34.91
93	I6_AR9	ActiveIntronRegion	0	6.33	9.37	3.94	1.42	34.54	29.65
94	ER7a	ExonRegion	0	10.07	13.90	24.64	19.78	1.22	2.83
95	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
96	E7a_E9a	KnownJunction	1	16.03	30.15	11.56	32.95	5.08	0.00
97	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
98	I8_AR2	ActiveIntronRegion	0	8.31	7.91	6.45	1.57	61.57	40.73
99	I8_AR3	ActiveIntronRegion	0	1.69	1.11	3.62	1.24	84.43	68.63
100	I8_SR3	SilentIntronRegion	0	7.39	6.23	6.52	1.80	100.34	150.26
101	I8_AR4	ActiveIntronRegion	0	8.45	6.23	6.52	2.15	91.69	137.25
102	I8_AR5	ActiveIntronRegion	0	2.86	0.94	3.36	2.51	51.72	27.13
103	ER9a	ExonRegion	0	9.24	15.82	19.39	17.14	1.69	1.15
104	E9a_E10a	KnownJunction	0	18.80	23.23	8.99	20.01	0.00	0.00
105	I9_AR2	ActiveIntronRegion	0	0.81	0.00	5.22	4.12	26.34	36.52
106	ER10a	ExonRegion	0	20.56	14.71	19.59	21.15	3.54	0.00
107	E10a_E11a	KnownJunction	1	34.59	20.08	19.07	41.16	0.00	0.00
108	ER11a	ExonRegion	0	15.84	11.63	26.62	19.75	0.00	0.55
109	E11a_E12a	KnownJunction	1	29.28	3.37	40.93	26.04	0.00	5.21
110	I11_SR5	SilentIntronRegion	0	2.55	1.49	2.57	1.27	20.43	24.01
111	ER12a	ExonRegion	0	32.14	11.62	36.30	31.98	0.00	0.55
112	E12a_E13a	KnownJunction	0	40.19	14.06	86.36	35.89	0.00	0.00
113	ER13a	ExonRegion	0	17.63	15.94	32.92	30.33	1.10	0.00
114	E13a_E14a	KnownJunction	0	14.04	2.31	8.77	10.77	0.00	0.00
115	ER14a	ExonRegion	0	9.96	10.78	9.69	9.46	2.18	1.04
116	E14_Da	KnownBoundary	0	9.52	19.24	6.72	0.00	3.50	32.41
117	ER14b	ExonRegion	0	78.12	50.12	18.75	13.67	226.49	227.61
118	ER14c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
119	IG28_SR1	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	9.16	3.13