Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	VPS36	Gene	0	16.57	6.95	22.84	9.50	28.11	11.89
2	475375	Transcript	0	2.62	0.59	1.43	0.89	0.19	0.38
3	378060	Transcript	0	96.29	31.64	72.71	25.61	430.89	158.34
4	480923	Transcript	0	0.00	1.84	2.38	0.00	7.48	3.17
5	492650	Transcript	0	6.19	1.12	4.45	3.88	4.10	0.38
6	418648	Transcript	0	27.71	9.73	9.42	5.58	57.30	26.91
7	497149	Transcript	0	1.02	0.00	4.83	2.23	0.00	0.00
8	462289	Transcript	0	0	0	0	0	0	0
9	IG47_AR4	ActiveIntergenicRegion	0	21.03	1.62	2.70	1.12	19.76	5.78
10	ER1a	ExonRegion	0	5.13	1.19	0.62	1.23	0.00	0.00
11	ER1b	ExonRegion	0	21.34	17.90	13.00	7.37	20.53	10.51
12	E1a_E3a	KnownJunction	0	18.08	0.00	5.86	3.37	208.84	98.15
13	ER2a	ExonRegion	0	0.00	0.93	1.28	0.00	1.64	1.14
14	E2a_E3a	KnownJunction	0	0.00	2.76	3.47	0.00	13.32	5.21
15	ER3a	ExonRegion	0	25.83	15.93	35.42	13.30	75.86	35.82
16	E3a_E4a	KnownJunction	0	55.56	34.76	74.57	28.44	54.69	31.57
17	ER4a	ExonRegion	0	46.33	21.01	69.83	16.63	111.51	33.82
18	E4a_E5a	KnownJunction	1	53.45	15.30	92.73	16.86	581.32	119.05
19	ER5a	ExonRegion	0	44.28	14.36	69.82	35.99	352.47	114.36
20	E5_Da	KnownBoundary	0	3.01	0.00	0.00	2.72	0.00	0.00
21	E5a_E6a	KnownJunction	0	50.80	6.75	51.40	15.99	332.94	259.68
22	ER5b	ExonRegion	0	0.11	0.00	2.24	0.55	0.37	0.76
23	I5	Intron	0	4.88	0.46	3.83	1.66	11.95	3.06
24	I5_SR1	SilentIntronRegion	0	3.94	0.21	4.42	1.89	10.70	2.74
25	I5_AR1	ActiveIntronRegion	0	6.15	2.08	9.19	5.72	19.73	7.19
26	I5_AR2	ActiveIntronRegion	0	9.22	1.53	1.60	0.00	26.80	4.80
27	E6_Aa	NovelBoundary	0	48.02	62.49	18.33	0.00	25.64	3.69
28	ER6a	ExonRegion	0	120.39	62.23	121.85	43.04	188.07	128.39
29	E6_Da	KnownBoundary	0	236.51	130.10	209.32	78.84	397.62	217.20
30	ER6b	ExonRegion	0	142.07	72.53	129.24	51.80	390.73	162.66
31	E6_Db	NovelBoundary	0	0.00	0.00	3.36	3.21	18.64	9.40
32	E6b_E7a	KnownJunction	0	68.93	10.12	45.77	20.01	1105.87	391.07
33	ER7a	ExonRegion	0	76.11	20.23	59.88	18.13	185.08	69.88
34	E7_Da	NovelBoundary	0	10.91	0.00	12.13	3.37	0.00	0.00
35	E7a_E9b	KnownJunction	0	98.04	23.68	55.96	12.51	41.87	9.74
36	I7	Intron	0	3.96	1.47	9.25	7.53	0.09	0.19
37	I7_SR1	SilentIntronRegion	0	4.66	1.71	6.42	5.18	0.03	1.02
38	I7_AR1	ActiveIntronRegion	0	3.92	1.32	8.71	5.94	0.24	0.00
39	I7_AR2	ActiveIntronRegion	0	4.18	1.71	12.89	13.50	0.00	0.00
40	E8_Aa	NovelBoundary	0	23.56	8.27	60.57	15.01	8.91	0.00
41	ER8a	ExonRegion	0	7.41	1.39	4.56	5.47	1.97	1.14
42	E8_Da	NovelBoundary	0	14.04	3.49	72.30	43.44	0.00	0.00
43	E8a_E9b	KnownJunction	0	9.64	0.00	3.02	3.04	10.32	0.00
44	I8	Intron	0	2.02	1.59	7.58	5.77	0.00	0.00
45	I8_AR1	ActiveIntronRegion	0	2.02	1.59	7.59	5.77	0.00	0.00
46	E9_Aa	NovelBoundary	0	3.13	0.00	16.96	3.26	0.00	0.00
47	ER9a	ExonRegion	0	2.26	0.58	2.83	5.51	0.46	0.34
48	E9_Ab	KnownBoundary	0	5.97	2.98	10.25	13.16	0.00	0.00
49	ER9b	ExonRegion	0	103.92	20.97	58.66	23.56	16.27	12.26
50	E9a_E10a	KnownJunction	0	94.78	10.46	48.10	23.27	8.91	31.90
51	ER10a	ExonRegion	0	84.62	13.32	45.76	26.51	15.25	17.61
52	E10a_E11a	KnownJunction	0	51.64	15.41	45.71	29.96	34.71	28.71
53	E11_Aa	NovelBoundary	0	2.95	6.97	0.00	0.00	0.00	0.00
54	ER11a	ExonRegion	0	52.83	19.71	42.07	25.99	7.59	8.10
55	E11_Da	KnownBoundary	0	3.74	0.00	5.81	0.00	0.00	0.00
56	E11a_E12a	KnownJunction	0	34.71	19.40	19.18	33.82	5.16	33.50
57	ER11b	ExonRegion	0	1.52	1.99	5.77	3.14	0.00	0.00
58	E11_Db	NovelBoundary	0	3.19	0.00	14.52	2.88	0.00	0.00
59	I11	Intron	0	2.38	1.46	10.10	2.73	0.76	0.26
60	I11_SR1	SilentIntronRegion	0	4.53	2.55	14.66	5.93	0.55	0.00
61	E12_Aa	NovelBoundary	0	6.15	0.00	27.44	2.72	4.41	0.00
62	ER12a	ExonRegion	0	26.81	23.83	48.12	25.36	14.33	8.05
63	E12_Da	NovelBoundary	0	0.00	0.00	14.12	2.72	0.00	0.00
64	E12a_E13a	KnownJunction	1	22.48	25.87	69.79	16.26	35.96	5.21
65	I12_SR1	SilentIntronRegion	0	6.38	3.43	18.34	11.75	0.00	0.92
66	E13_Aa	NovelBoundary	0	7.95	0.00	16.51	2.28	0.00	0.00
67	ER13a	ExonRegion	0	22.25	17.90	50.74	26.18	9.68	6.61
68	E13_Da	NovelBoundary	0	0.00	6.41	0.00	0.00	0.00	0.00
69	E13a_E14a	KnownJunction	0	22.72	12.88	50.95	40.29	9.24	18.55
70	E14_Aa	NovelBoundary	0	9.64	2.81	9.56	11.47	4.25	15.28
71	ER14a	ExonRegion	0	22.21	15.84	57.18	38.14	17.70	8.69
72	E14_Da	NovelBoundary	0	5.36	8.49	0.00	2.61	0.00	0.00
73	E14a_E15c	KnownJunction	0	25.91	18.56	46.11	19.68	44.03	13.27
74	I14	Intron	0	2.14	0.63	12.79	6.12	0.18	3.01
75	I14_AR1	ActiveIntronRegion	0	2.15	0.63	12.82	6.14	0.18	3.01
76	ER15a	ExonRegion	0	2.04	0.00	9.65	4.46	0.00	0.00
77	E15_Ab	KnownBoundary	0	2.53	0.00	28.86	5.93	0.00	0.00
78	ER15b	ExonRegion	0	3.04	0.31	21.37	14.22	2.10	0.11
79	E15_Ac	KnownBoundary	0	5.78	0.00	10.47	18.65	9.41	0.00
80	ER15c	ExonRegion	0	39.81	18.01	78.70	31.35	17.84	9.06
81	E15_Da	NovelBoundary	0	0.00	0.00	3.19	8.70	0.00	0.00
82	E15a_E16a	KnownJunction	0	40.37	17.94	94.33	59.48	29.88	21.66
83	E15a_E16b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00
84	E16_Aa	NovelBoundary	0	3.74	4.95	23.00	11.04	4.58	0.00
85	ER16a	ExonRegion	0	23.73	10.03	75.22	24.43	31.34	16.65
86	E16_Da	KnownBoundary	0	24.89	15.92	58.69	17.67	119.03	38.20
87	ER16b	ExonRegion	0	3.39	2.04	11.41	4.72	5.43	1.53
88	E16_Ab	KnownBoundary	0	0.00	3.04	0.00	0.00	23.89	0.00
89	ER16c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
90	E16_Db	KnownBoundary	0	3.19	0.00	0.00	0.00	9.82	18.55
91	ER16d	ExonRegion	0	28.48	8.44	7.82	2.02	35.40	15.95
92	E16_Dc	KnownBoundary	0	115.09	22.89	47.42	12.02	112.28	46.18
93	ER16e	ExonRegion	0	53.16	18.88	16.01	5.64	114.14	53.48