Order	SeqName	SeqType	IsAE	Frontal_mRNA	Amygdala_mRNA	Frontal_Ribo	Amygdala_Ribo	Frontal_Ampl	Amygdala_Ampl
1	ATXN2	Gene	0	64.22	40.18	39.66	34.59	64.60	47.85
2	377611	Transcript	0	0	0	0	0	0	0
3	377617	Transcript	0	86.05	39.71	46.11	24.20	9.74	0.00
4	483311	Transcript	0	0	0	0	0	0	0
5	389153	Transcript	0	0	0	0	0	0	0
6	392645	Transcript	0	12.16	6.05	3.87	2.32	38.66	27.35
7	471866	Transcript	0	0.87	0.10	5.68	3.78	3.04	0.02
8	481331	Transcript	0	9.99	2.59	20.24	12.85	1.69	1.32
9	492467	Transcript	0	0.00	0.00	4.95	0.00	0.00	0.00
10	389154	Transcript	0	24.34	15.19	0.00	2.39	28.47	46.34
11	495342	Transcript	1	15.23	3.68	9.69	11.55	10.87	1.96
12	482777	Transcript	0	0	0	0	0	0	0
13	445688	Transcript	0	0	0	0	0	0	0
14	468920	Transcript	0	0	0	0	0	0	0
15	480754	Transcript	0	17.05	17.77	2.53	4.22	4.69	3.53
16	475132	Transcript	0	0	0	0	0	0	0
17	484991	Transcript	0	0	0	0	0	0	0
18	ER1a	ExonRegion	0	0.00	0.79	0.82	0.00	0.00	0.00
19	E1_Ab	KnownBoundary	0	0.00	0.00	2.62	0.00	0.00	0.00
20	ER1b	ExonRegion	0	0.35	0.00	0.88	0.03	0.00	0.18
21	E1_Ac	KnownBoundary	0	2.53	2.92	6.03	0.00	9.66	5.12
22	ER1c	ExonRegion	0	5.45	1.97	7.66	3.97	0.00	1.51
23	E1a_E3a	KnownJunction	0	13.80	3.49	9.79	6.47	0.00	0.00
24	ER2a	ExonRegion	0	2.59	1.42	0.34	0.30	0.00	0.00
25	E2a_E3a	KnownJunction	0	3.13	0.00	0.00	2.39	0.00	0.00
26	I2_AR1	ActiveIntronRegion	0	16.23	5.14	9.55	7.93	1.09	0.00
27	ER3a	ExonRegion	0	20.49	10.39	27.24	23.52	0.00	0.00
28	E3_Da	NovelBoundary	0	0.00	0.00	5.69	12.67	0.00	0.00
29	E3a_E4a	KnownJunction	0	23.98	21.32	61.82	64.60	0.00	0.00
30	I3	Intron	0	1.29	0.54	9.26	5.61	0.63	0.16
31	I3_SR2	SilentIntronRegion	0	1.26	0.62	10.15	5.78	0.68	0.06
32	ER4a	ExonRegion	0	26.29	20.60	68.11	57.27	1.81	1.48
33	E4_Da	NovelBoundary	0	2.53	0.00	15.88	12.51	15.32	7.64
34	E4a_E5a	KnownJunction	0	25.01	23.96	85.50	73.02	9.82	4.95
35	ER5a	ExonRegion	0	45.86	25.07	127.30	112.95	4.14	3.21
36	E5a_E6b	KnownJunction	0	68.09	51.13	188.54	180.90	0.00	8.65
37	ER6a	ExonRegion	0	0.87	0.10	5.68	3.78	3.04	0.02
38	E6_Ab	KnownBoundary	0	3.31	0.00	18.10	11.31	4.33	0.00
39	ER6b	ExonRegion	0	52.71	36.07	155.99	128.45	11.19	16.55
40	E6a_E7a	KnownJunction	0	57.79	56.92	140.26	114.29	0.00	0.00
41	I6_AR1	ActiveIntronRegion	1	6.79	2.45	5.32	0.72	4.34	13.81
42	ER7a	ExonRegion	0	61.16	53.43	143.02	119.12	0.09	0.00
43	E7a_E8a	KnownJunction	0	53.21	29.98	104.00	101.57	0.00	0.00
44	ER8a	ExonRegion	0	51.84	45.34	113.21	112.23	2.97	0.00
45	E8a_E9a	KnownJunction	0	81.29	54.73	251.10	172.04	8.57	0.00
46	E9_Aa	NovelBoundary	0	7.47	2.64	36.49	25.45	0.00	0.00
47	ER9a	ExonRegion	0	75.30	42.53	155.16	123.42	1.68	1.28
48	E9_Ab	KnownBoundary	0	68.51	68.00	89.77	123.92	4.58	0.00
49	ER9b	ExonRegion	0	68.34	56.56	140.33	110.66	3.45	2.13
50	E9_Da	KnownBoundary	0	73.69	57.60	174.25	90.97	9.49	10.41
51	ER9c	ExonRegion	0	59.37	47.36	164.98	88.77	3.62	3.70
52	E9_Db	KnownBoundary	0	3.68	2.47	35.18	10.00	0.00	0.00
53	E9b_E10a	KnownJunction	0	64.47	44.66	130.81	68.24	7.82	7.05
54	ER9d	ExonRegion	0	5.44	2.08	25.70	13.48	0.00	0.00
55	E9c_E10a	KnownJunction	0	7.41	2.59	18.96	12.40	0.00	0.00
56	I9	Intron	0	6.01	8.78	10.42	10.34	0.44	0.45
57	I9_SR1	SilentIntronRegion	0	6.02	8.80	10.44	10.36	0.44	0.45
58	ER10a	ExonRegion	0	65.66	51.38	96.05	75.19	5.09	0.85
59	E10a_E11a	KnownJunction	1	34.95	46.35	36.43	75.09	9.41	0.00
60	E10a_E12a	KnownJunction	0	17.11	3.09	16.05	12.67	5.08	3.95
61	E11_Ab	NovelBoundary	0	51.58	69.80	51.46	78.62	4.66	0.00
62	ER11a	ExonRegion	1	36.40	48.95	35.98	68.68	4.27	0.00
63	ER11b	ExonRegion	0	39.75	45.65	50.63	51.45	2.37	1.52
64	E11a_E12a	KnownJunction	0	29.95	53.26	34.95	57.64	8.91	0.00
65	ER12a	ExonRegion	0	38.74	41.46	58.53	45.76	8.93	4.10
66	E12_Da	KnownBoundary	0	59.77	35.83	86.58	39.26	23.56	21.16
67	ER12b	ExonRegion	1	48.40	41.60	54.50	44.93	22.81	5.52
68	E12_Db	KnownBoundary	1	9.52	3.32	6.03	0.00	61.84	14.44
69	E12b_E13a	KnownJunction	0	52.78	22.67	66.89	70.14	0.00	0.00
70	E12b_E14a	KnownJunction	0	0.00	0.00	9.91	0.00	0.00	0.00
71	ER12c	ExonRegion	0	30.76	16.72	11.27	4.27	115.97	82.06
72	E12_Dc	NovelBoundary	1	114.85	74.81	30.34	30.39	89.48	181.26
73	I12	Intron	0	13.78	6.56	6.37	1.90	26.26	23.08
74	I12_SR1	SilentIntronRegion	0	13.80	6.56	6.38	1.90	26.29	23.11
75	E13_Aa	NovelBoundary	0	9.52	2.47	24.48	13.05	5.16	0.00
76	ER13a	ExonRegion	0	52.99	44.95	60.86	64.51	1.88	0.98
77	E13a_E14a	KnownJunction	0	64.41	37.63	73.38	83.68	4.33	4.20
78	E14_Aa	NovelBoundary	0	6.45	0.00	12.75	22.35	4.41	0.00
79	ER14a	ExonRegion	0	63.95	43.19	103.21	104.94	4.07	13.25
80	E14a_E15a	KnownJunction	0	99.24	39.26	116.47	134.85	0.00	21.32
81	ER15a	ExonRegion	1	70.51	46.12	169.67	180.38	1.20	12.07
82	E15_Da	NovelBoundary	0	10.12	0.00	18.05	5.49	17.81	7.22
83	E15a_E16a	KnownJunction	0	72.25	81.27	242.73	266.86	5.16	38.37
84	E16_Aa	NovelBoundary	0	3.01	2.31	24.02	19.03	0.00	0.00
85	ER16a	ExonRegion	0	86.05	62.95	176.37	175.45	1.66	6.91
86	E16_Ab	KnownBoundary	0	144.43	95.79	198.67	159.58	5.16	0.00
87	ER16b	ExonRegion	0	107.41	83.87	161.20	147.09	9.45	5.15
88	E16a_E17a	KnownJunction	0	141.18	75.03	141.63	126.15	21.56	0.00
89	ER16c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00
90	E17_Aa	NovelBoundary	0	9.52	0.00	14.63	6.63	8.24	0.00
91	ER17a	ExonRegion	0	145.75	98.55	153.03	183.45	7.63	4.05
92	E17_Da	NovelBoundary	0	2.95	0.00	14.91	2.66	9.32	4.87
93	E17a_E18a	KnownJunction	0	195.11	152.26	203.85	296.77	14.90	14.19
94	E18_Ab	NovelBoundary	0	115.45	120.98	137.48	184.65	23.39	3.95
95	ER18a	ExonRegion	0	160.73	155.56	190.23	263.36	11.64	6.48
96	ER18b	ExonRegion	1	148.01	116.13	178.94	243.40	22.07	5.12
97	E18a_E19a	KnownJunction	0	203.91	146.80	220.81	265.83	22.81	5.21
98	E18a_E20b	KnownJunction	0	3.13	0.00	0.00	0.00	0.00	0.00
99	E19_Aa	NovelBoundary	0	9.64	6.19	20.89	2.45	0.00	5.21
100	ER19a	ExonRegion	0	158.00	109.29	128.14	148.22	13.63	3.34
101	E19a_E20b	KnownJunction	0	86.05	39.71	46.11	24.20	9.74	0.00
102	E19b_E20b	KnownJunction	1	80.14	15.41	36.15	18.27	23.56	0.00
103	ER19b	ExonRegion	1	79.88	24.58	39.11	29.08	11.45	1.85
104	I19_AR1	ActiveIntronRegion	0	7.37	1.65	14.13	8.24	6.17	4.16
105	ER20a	ExonRegion	1	4.81	5.28	12.93	1.08	1.55	0.04
106	E20_Ab	KnownBoundary	0	0.00	2.76	8.14	5.98	0.00	0.00
107	ER20b	ExonRegion	1	147.69	107.22	64.30	59.90	43.87	13.25
108	E20a_E21a	KnownJunction	0	261.81	106.87	35.52	33.55	127.93	66.07
109	ER21a	ExonRegion	0	229.12	129.81	52.89	44.43	48.75	19.83
110	E21_Da	KnownBoundary	0	15.85	2.81	5.98	5.17	34.38	0.00
111	E21a_E22a	KnownJunction	1	151.54	73.18	22.83	15.17	177.87	73.88
112	E21a_E23a	KnownJunction	0	46.40	24.80	3.07	7.67	14.82	9.15
113	ER21b	ExonRegion	0	15.23	3.68	9.69	11.55	10.87	1.96
114	E21_Db	NovelBoundary	0	26.93	5.57	33.59	8.65	23.81	4.53
115	I21	Intron	0	27.43	10.73	11.22	4.77	42.46	26.23
116	I21_AR1	ActiveIntronRegion	0	11.82	4.23	3.03	3.56	29.44	7.53
117	I21_SR1	SilentIntronRegion	0	42.65	18.16	15.55	5.67	22.50	14.79
118	I21_AR2	ActiveIntronRegion	0	42.31	10.24	26.07	19.43	36.41	36.91
119	I21_AR3	ActiveIntronRegion	0	42.73	18.08	15.40	5.92	108.56	64.46
120	I21_SR2	SilentIntronRegion	0	19.53	7.04	9.98	3.22	5.19	8.61
121	E22_Aa	NovelBoundary	0	17.29	5.23	16.68	11.85	0.00	0.00
122	ER22a	ExonRegion	0	157.84	68.71	23.50	26.81	60.33	24.10
123	E22a_E23a	KnownJunction	0	208.61	79.31	36.72	41.27	50.77	13.52
124	I22_AR4	ActiveIntronRegion	0	7.99	2.86	9.66	4.89	2.87	0.00
125	I22_AR5	ActiveIntronRegion	0	10.56	4.16	17.38	19.39	3.62	0.56
126	I22_AR6	ActiveIntronRegion	0	11.19	4.16	17.38	18.74	3.62	1.85
127	I22_AR7	ActiveIntronRegion	0	9.71	3.53	19.77	18.31	2.35	1.85
128	I22_AR8	ActiveIntronRegion	0	9.50	4.16	14.56	22.40	0.00	1.85
129	I22_AR9	ActiveIntronRegion	1	6.33	2.97	10.86	23.70	0.00	1.85
130	I22_AR10	ActiveIntronRegion	0	8.45	2.08	6.52	7.54	0.00	3.70
131	I22_AR11	ActiveIntronRegion	0	8.45	2.08	8.69	9.96	0.00	2.78
132	I22_AR12	ActiveIntronRegion	0	7.65	0.78	6.79	9.96	0.68	3.70
133	I22_AR14	ActiveIntronRegion	1	10.56	1.73	6.16	16.16	1.81	4.63
134	I22_SR3	SilentIntronRegion	0	9.11	1.88	6.59	5.18	11.17	15.16
135	I22_AR15	ActiveIntronRegion	0	11.29	4.44	6.76	9.00	3.87	3.06
136	E23_Aa	NovelBoundary	0	21.09	3.32	24.93	15.88	36.79	28.63
137	ER23a	ExonRegion	0	278.79	138.27	68.31	53.40	40.98	31.31
138	E23_Ab	KnownBoundary	0	249.16	167.89	55.16	72.64	62.34	93.61
139	ER23b	ExonRegion	0	271.08	136.08	46.63	55.74	32.09	35.31
140	E23_Da	NovelBoundary	0	0.00	3.09	0.00	0.00	50.77	18.05
141	E23a_E24b	KnownJunction	0	342.50	125.65	52.20	49.75	78.57	37.11
142	ER24a	ExonRegion	0	30.97	15.24	5.07	5.98	4.22	1.85
143	ER24b	ExonRegion	0	214.05	123.25	35.35	35.56	60.57	32.16
144	E24_Ac	KnownBoundary	0	352.92	174.47	52.37	38.55	177.04	95.37
145	ER24c	ExonRegion	0	296.27	165.13	45.28	39.45	90.66	52.30
146	E24_Da	KnownBoundary	0	38.99	30.88	5.86	2.56	10.32	34.25
147	E24a_E24d	KnownJunction	0	10.00	0.00	0.00	0.00	8.32	3.95
148	E24a_E24f	KnownJunction	1	191.13	87.29	8.88	9.03	206.17	44.16
149	E24a_E24g	KnownJunction	0	24.34	15.19	0.00	2.39	28.47	46.34
150	ER24d	ExonRegion	0	13.32	10.98	10.37	4.37	2.30	2.24
151	E24_Ad	KnownBoundary	0	16.87	6.58	3.36	9.84	3.91	0.00
152	ER24e	ExonRegion	0	17.29	16.17	9.54	12.28	8.16	6.43
153	E24_Db	KnownBoundary	0	9.40	12.43	9.11	2.34	5.16	5.21
154	E24b_E24f	KnownJunction	0	3.13	20.30	0.00	2.45	5.16	5.21
155	E24_Dc	KnownBoundary	0	17.96	11.98	6.94	9.24	34.29	5.12
156	ER24f	ExonRegion	0	19.96	19.26	10.86	12.14	14.46	5.55
157	ER24g	ExonRegion	0	24.17	16.67	19.59	14.23	8.34	1.34
158	E24_Ae	KnownBoundary	0	29.53	21.99	23.00	15.44	13.07	9.91
159	ER24h	ExonRegion	0	36.52	27.30	23.25	23.88	14.61	5.80
160	E24_Af	KnownBoundary	1	46.58	13.61	7.06	10.66	68.34	14.94
161	ER24i	ExonRegion	0	208.44	108.55	31.85	34.94	164.16	63.26
162	E24_Dd	KnownBoundary	0	13.62	10.18	12.24	0.00	24.55	18.55
163	E24d_E24g	KnownJunction	0	254.52	164.35	22.88	17.13	274.34	148.77
164	ER24j	ExonRegion	1	22.46	16.22	11.27	0.92	22.32	5.58
165	E24_De	KnownBoundary	1	38.20	29.75	8.77	0.00	139.92	23.00
166	ER24k	ExonRegion	0	49.57	20.77	14.83	7.68	93.37	35.98
167	E24_Ag	KnownBoundary	0	81.41	36.56	2.96	9.08	244.88	221.06
168	ER24l	ExonRegion	0	356.70	187.50	43.73	19.08	664.90	486.29
169	E24_Df	KnownBoundary	0	195.23	78.74	37.57	6.04	572.41	282.77
170	E24_Dg	KnownBoundary	0	147.87	94.15	12.87	2.56	259.44	272.02
171	ER24m	ExonRegion	0	108.63	82.89	10.32	2.15	180.08	142.73
172	ER24n	ExonRegion	1	164.31	113.48	24.78	2.71	570.16	767.02
173	E24_Dh	KnownBoundary	0	165.22	82.12	5.35	0.00	914.67	1155.83
174	E24_Di	KnownBoundary	1	45.01	114.74	3.53	9.24	1474.18	1296.04
175	ER24o	ExonRegion	0	111.45	103.73	8.22	4.85	794.68	770.17
176	ER24p	ExonRegion	1	24.24	53.40	1.33	2.83	460.37	364.35
177	IG49_SR1	SilentIntergenicRegion	0	5.46	3.91	9.71	2.50	4.49	1.47