main module

mavis.summary.main.main(inputs, output, annotations, dgv_annotation, product_sequence_files=None, filter_cdna_synon=True, filter_protein_synon=True, filter_min_remapped_reads=5, filter_min_spanning_reads=5, filter_min_flanking_reads=5, filter_min_flanking_only_reads=10, filter_min_split_reads=5, filter_min_linking_split_reads=1, flanking_call_distance=0, split_call_distance=10, contig_call_distance=0, spanning_call_distance=5, **kwargs)