pairing module¶
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mavis.pairing.pairing.
equivalent_events
(ev1, ev2, reference_transcripts, DISTANCES=None, product_sequences=None)[source]¶
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mavis.pairing.pairing.
predict_transcriptome_breakpoint
(breakpoint, transcript)[source]¶ for a given genomic breakpoint and the target transcript. Predicts the possible transcriptomic breakpoints that would be expected based on the splicing model for abrogated splice sites
Parameters: - breakpoint (Breakpoint) – the genomic breakpoint
- transcript (usTranscript) – the transcript