constants module

mavis.summary.constants.DEFAULTS = WeakMavisNamespace(_defns={'filter_min_remapped_reads': 'Minimum number of remapped reads for a call by contig', 'filter_min_spanning_reads': 'Minimum number of spanning reads for a call by spanning reads', 'filter_min_flanking_reads': 'Minimum number of flanking pairs for a call by flanking pairs', 'filter_min_split_reads': 'Minimum number of split reads for a call by split reads', 'filter_min_linking_split_reads': 'Minimum number of linking split reads for a call by split reads', 'filter_cdna_synon': 'Filter all annotations synonymous at the cdna level', 'filter_protein_synon': 'Filter all annotations synonymous at the protein level'}, _types={'filter_min_remapped_reads': <class 'int'>, 'filter_min_spanning_reads': <class 'int'>, 'filter_min_flanking_reads': <class 'int'>, 'filter_min_split_reads': <class 'int'>, 'filter_min_linking_split_reads': <class 'int'>, 'filter_cdna_synon': <function cast_boolean>, 'filter_protein_synon': <function cast_boolean>}, filter_cdna_synon=True, filter_min_flanking_reads=10, filter_min_linking_split_reads=1, filter_min_remapped_reads=5, filter_min_spanning_reads=5, filter_min_split_reads=5, filter_protein_synon=True)

• filter_cdna_synon
• filter_min_flanking_reads
• filter_min_linking_split_reads
• filter_min_remapped_reads
• filter_min_spanning_reads
• filter_min_split_reads
• filter_protein_synon