pairing module

mavis.pairing.pairing.comparison_distance(event1, event2, input_distances=None)[source]
mavis.pairing.pairing.equivalent(event1, event2, distances=None)[source]

compares two events by breakpoint position to see if they are equivalent

mavis.pairing.pairing.inferred_equivalent(event1, event2, reference_transcripts, distances=None, product_sequences=None)[source]

comparison of events using product prediction and breakpoint prediction

mavis.pairing.pairing.predict_transcriptome_breakpoint(breakpoint, transcript)[source]

for a given genomic breakpoint and the target transcript. Predicts the possible transcriptomic breakpoints that would be expected based on the splicing model for abrogated splice sites

Parameters:

see theory - pairing similar events