NA12878_PCRFRee_20170509.MPS12342217-E10.4212.1.pair1.fastq.gz FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	NA12878_PCRFRee_20170509.MPS12342217-E10.4212.1.pair1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	490121034
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	140455	0.0	6.7021766	145
ACACGTC	727350	0.0	6.248943	145
TATGCCG	120455	0.0	6.232738	145
CGTCTGA	643320	0.0	6.1763964	145
TCTCGTA	151780	0.0	6.106607	145
ACGTCTG	704090	0.0	5.905767	145
CACGTCT	754275	0.0	5.8154716	145
ATCTCGT	183790	0.0	5.7803755	145
CGTATGC	154690	0.0	5.579477	145
GCACACG	877605	0.0	5.517614	145
CACACGT	862095	0.0	5.4706182	145
GATCGGA	1135230	0.0	5.4515243	145
ATCGGAA	1111885	0.0	5.4278116	145
TCGGAAG	1088705	0.0	5.416908	145
CGGAAGA	1070100	0.0	5.328242	145
AGATCGG	1183145	0.0	5.2711735	145
ATGCCGT	142500	0.0	5.0651045	145
GTCACTA	517870	0.0	5.0180326	145
TCGTATG	173805	0.0	5.0033736	145