FastQCFastQC Report
Mon 19 Jun 2017
HMT5HCCXX_8_AGCATC_1_chastity_passed.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMT5HCCXX_8_AGCATC_1_chastity_passed.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450692397
Sequences flagged as poor quality0
Sequence length150
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA1671350.09.1139611
ATCGGAA1959350.07.89093262
TCGGAAG2089850.07.42905473
CGGAAGA2301750.06.77016974
Produced by FastQC (version 0.11.5)