Module	Section	Sample Name	Source
Picard	GcBiasDetailMetrics	POG1047_N_illumina	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/POG1047_N_illumina.bam.gcmets.txt
Picard	GcBiasDetailMetrics	V300032074_L04_R1_150bp_250518_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L04_R1_150bp_250518_paired.sorted.bam.dupmark055.bam.gcmets2.txt
Picard	GcBiasDetailMetrics	V300032060_L03_R1_150bp_250516_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L03_R1_150bp_250516_paired.sorted.bam.dupmark055.bam.gcmets2.txt
Picard	GcBiasDetailMetrics	V300032060_L01_R1_150bp_250514_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L01_R1_150bp_250514_paired.sorted.bam.dupmark055.bam.gcmets2.txt
Picard	GcBiasDetailMetrics	V300032060_L02_R1_150bp_250515_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L02_R1_150bp_250515_paired.sorted.bam.dupmark055.bam.gcmets2.txt
Picard	GcBiasDetailMetrics	V300032074_L02_R1_150bp_250512_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L02_R1_150bp_250512_paired.sorted.bam.dupmark055.bam.gcmets2.txt
Picard	GcBiasDetailMetrics	POG1047_N_1_lane	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/POG1047_N_1_lane.bam.gcmets.txt
Picard	GcBiasDetailMetrics	V300032074_L03_R1_150bp_250513_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L03_R1_150bp_250513_paired.sorted.bam.dupmark055.bam.gcmets2.txt
Picard	GcBiasDetailMetrics	V300032074_L01_R1_150bp_250511_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L01_R1_150bp_250511_paired.sorted.bam.dupmark055.bam.gcmets2.txt
Picard	GcBiasDetailMetrics	V300032060_L04_R1_150bp_250517_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L04_R1_150bp_250517_paired.sorted.bam.dupmark055.bam.gcmets2.txt
Picard	GcBiasSummaryMetrics	POG1047_N_illumina	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/POG1047_N_illumina.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	V300032074_L04_R1_150bp_250518_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L04_R1_150bp_250518_paired.sorted.bam.dupmark055.bam.gc2.summary.txt
Picard	GcBiasSummaryMetrics	V300032060_L03_R1_150bp_250516_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L03_R1_150bp_250516_paired.sorted.bam.dupmark055.bam.gc2.summary.txt
Picard	GcBiasSummaryMetrics	V300032060_L01_R1_150bp_250514_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L01_R1_150bp_250514_paired.sorted.bam.dupmark055.bam.gc2.summary.txt
Picard	GcBiasSummaryMetrics	V300032060_L02_R1_150bp_250515_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L02_R1_150bp_250515_paired.sorted.bam.dupmark055.bam.gc2.summary.txt
Picard	GcBiasSummaryMetrics	V300032074_L02_R1_150bp_250512_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L02_R1_150bp_250512_paired.sorted.bam.dupmark055.bam.gc2.summary.txt
Picard	GcBiasSummaryMetrics	POG1047_N_1_lane	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/POG1047_N_1_lane.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	V300032074_L03_R1_150bp_250513_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L03_R1_150bp_250513_paired.sorted.bam.dupmark055.bam.gc2.summary.txt
Picard	GcBiasSummaryMetrics	V300032074_L01_R1_150bp_250511_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L01_R1_150bp_250511_paired.sorted.bam.dupmark055.bam.gc2.summary.txt
Picard	GcBiasSummaryMetrics	V300032060_L04_R1_150bp_250517_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L04_R1_150bp_250517_paired.sorted.bam.dupmark055.bam.gc2.summary.txt
Samtools	stats	POG1047_N_illumina	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/POG1047_N_illumina.bam.stats
Samtools	stats	V300032074_L04_R1_150bp_250518_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L04_R1_150bp_250518_paired.sorted.bam.dupmark055.bam.stats
Samtools	stats	V300032060_L03_R1_150bp_250516_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L03_R1_150bp_250516_paired.sorted.bam.dupmark055.bam.stats
Samtools	stats	V300032060_L01_R1_150bp_250514_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L01_R1_150bp_250514_paired.sorted.bam.dupmark055.bam.stats
Samtools	stats	V300032060_L02_R1_150bp_250515_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L02_R1_150bp_250515_paired.sorted.bam.dupmark055.bam.stats
Samtools	stats	V300032074_L02_R1_150bp_250512_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L02_R1_150bp_250512_paired.sorted.bam.dupmark055.bam.stats
Samtools	stats	POG1047_N_1_lane	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/POG1047_N_1_lane.bam.stats
Samtools	stats	V300032074_L01_R1_150bp_250511_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L01_R1_150bp_250511_paired.sorted.bam.dupmark055.bam.stats
Samtools	stats	V300032074_L03_R1_150bp_250513_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L03_R1_150bp_250513_paired.sorted.bam.dupmark055.bam.stats
Samtools	stats	V300032060_L04_R1_150bp_250517_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L04_R1_150bp_250517_paired.sorted.bam.dupmark055.bam.stats
QualiMap	mapped_gc_distribution	POG1047_N_illumina	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/POG1047_N_illumina/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	V300032074_L04_R1_150bp_250518_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L04_R1_150bp_250518_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	V300032060_L03_R1_150bp_250516_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L03_R1_150bp_250516_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	V300032060_L01_R1_150bp_250514_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L01_R1_150bp_250514_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	V300032074_L02_R1_150bp_250512_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L02_R1_150bp_250512_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	POG1047_N_1_lane	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/POG1047_N_1_lane/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	V300032074_L01_R1_150bp_250511_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L01_R1_150bp_250511_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	V300032060_L02_R1_150bp_250515_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L02_R1_150bp_250515_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	V300032074_L03_R1_150bp_250513_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L03_R1_150bp_250513_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	V300032060_L04_R1_150bp_250517_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L04_R1_150bp_250517_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	insert_size_histogram	POG1047_N_illumina	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/POG1047_N_illumina/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	V300032074_L04_R1_150bp_250518_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L04_R1_150bp_250518_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	V300032060_L03_R1_150bp_250516_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L03_R1_150bp_250516_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	V300032060_L01_R1_150bp_250514_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L01_R1_150bp_250514_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	V300032074_L02_R1_150bp_250512_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L02_R1_150bp_250512_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	POG1047_N_1_lane	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/POG1047_N_1_lane/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	V300032074_L01_R1_150bp_250511_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L01_R1_150bp_250511_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	V300032060_L02_R1_150bp_250515_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L02_R1_150bp_250515_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	V300032074_L03_R1_150bp_250513_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L03_R1_150bp_250513_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	V300032060_L04_R1_150bp_250517_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L04_R1_150bp_250517_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	genome_results	POG1047_N_illumina	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/POG1047_N_illumina/genome_results.txt
QualiMap	genome_results	V300032074_L04_R1_150bp_250518_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L04_R1_150bp_250518_paired.sorted.bam.dupmark055_stats/genome_results.txt
QualiMap	genome_results	V300032060_L03_R1_150bp_250516_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L03_R1_150bp_250516_paired.sorted.bam.dupmark055_stats/genome_results.txt
QualiMap	genome_results	V300032060_L01_R1_150bp_250514_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L01_R1_150bp_250514_paired.sorted.bam.dupmark055_stats/genome_results.txt
QualiMap	genome_results	V300032074_L02_R1_150bp_250512_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L02_R1_150bp_250512_paired.sorted.bam.dupmark055_stats/genome_results.txt
QualiMap	genome_results	POG1047_N_1_lane	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/POG1047_N_1_lane/genome_results.txt
QualiMap	genome_results	V300032074_L01_R1_150bp_250511_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L01_R1_150bp_250511_paired.sorted.bam.dupmark055_stats/genome_results.txt
QualiMap	genome_results	V300032060_L02_R1_150bp_250515_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L02_R1_150bp_250515_paired.sorted.bam.dupmark055_stats/genome_results.txt
QualiMap	genome_results	V300032074_L03_R1_150bp_250513_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L03_R1_150bp_250513_paired.sorted.bam.dupmark055_stats/genome_results.txt
QualiMap	genome_results	V300032060_L04_R1_150bp_250517_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L04_R1_150bp_250517_paired.sorted.bam.dupmark055_stats/genome_results.txt
QualiMap	coverage_histogram	POG1047_N_illumina	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/POG1047_N_illumina/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	V300032074_L04_R1_150bp_250518_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L04_R1_150bp_250518_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	V300032060_L03_R1_150bp_250516_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L03_R1_150bp_250516_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	V300032060_L01_R1_150bp_250514_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L01_R1_150bp_250514_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	V300032074_L02_R1_150bp_250512_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L02_R1_150bp_250512_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	POG1047_N_1_lane	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/POG1047_N_1_lane/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	V300032074_L01_R1_150bp_250511_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L01_R1_150bp_250511_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	V300032060_L02_R1_150bp_250515_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L02_R1_150bp_250515_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	V300032074_L03_R1_150bp_250513_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032074_L03_R1_150bp_250513_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	V300032060_L04_R1_150bp_250517_paired	/projects/rcorbettprj2/TechD/MGI/germline_retest/LIMS_waiting/V300032060_L04_R1_150bp_250517_paired.sorted.bam.dupmark055_stats/raw_data_qualimapReport/coverage_histogram.txt