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findlanes.h

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00001 
00005 #ifndef FINDLANES_H
00006 #define FINDLANES_H
00007 
00009 #define DEFAULT_NLANES 121
00010 
00011 #define DEFAULT_MARKERPERIOD 5
00012 
00013 #define DEFAULT_MARKEROFFSET 0
00014 
00015 #define DEFAULT_LASTMARKEROFFSET 0
00016 
00017 #define DEFAULT_NZONES 10
00018 
00019 #define DEFAULT_SIZEFACTOR 10
00020 
00021 #define DEFAULT_WELL_EDGE 0
00022 
00023 #define DEFAULT_GELSPANFACTOR 0.75
00024 
00025 #define DEFAULT_GELNAME "image.tif"
00026 
00027 #define DEFAULT_PROJECTDIR "."
00028 
00029 #define DEFAULT_MINPSIZEFACTOR 0.0
00030 
00031 #define DEFAULT_FLAGOUT_NAME "LR_data.out"
00032 
00034 #define DEFAULT_ERROROUT_NAME "LR_error.out"
00035 
00036 #define DEFAULT_NOGROW_NAME "LR_no_grow.out"
00037 
00038 #define DEFAULT_TRACES_NAME "traces16_auto"
00039 
00040 #define DEFAULT_LANES_NAME "lanes"
00041 
00042 #define DEFAULT_IN_LANES_NAME "lanes"
00043 
00044 #define DEFAULT_LIMS_NAME "LR_LIMS.out"
00045 
00046 #include "allheaders.h"
00047 /* include lepontica libraries*/
00048 #include "gelinfo.h"
00049 /* gelinfo struct*/
00050 #include "anacutoff.h"
00051 /* anacutoff struct*/
00052 #include "readtiff.h"
00053 #include "mapto8bits.h"
00054 #include "medianfilter.h"
00055 #include "zone.h"
00056 #include "toneadjust.h"
00057 #include "spacing.h"
00058 #include "readlanes.h"
00059 #include "position.h"
00060 #include "diagnostic.h"
00061 #include "border.h"
00062 #include "node.h"
00063 #include "checkresult.h"
00064 #include "checknogrowths.h"
00065 #include "noisedetect.h"
00066 
00068 PIX *adjustTone(PIX *pixGel, INT32 **ZoneProjection, struct GelInfo *GelInfo, int *ZoneID, int *ToneAdjusted,  int Verbose);
00069 
00070 #endif
00071 

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