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checknogrowths.h File Reference

header file for checknogrowths.c, contains functions to extract the median row for each lane and outputs the thresholded roughness and maxdiff to a file More...

#include "allheaders.h"
#include "gelinfo.h"
#include "anacutoff.h"

Go to the source code of this file.

Functions

void extractRow (float **laneintensity, int imageWidth, int imageHeight, float *median)
 go down an image and place the median value in each column into an array
void checkNoGrows (FILE *OUTFILE, PIX *pixGel, float **PeakPosition, float *NodePosition, struct GelInfo *GelInfo, struct AnaCutoff *AnaCutoff, int Verbose)
 output the maxdiff and thresrough (threshold 1) of every lane suspected contaminated lanes is marked by negative thresrough


Detailed Description

header file for checknogrowths.c, contains functions to extract the median row for each lane and outputs the thresholded roughness and maxdiff to a file


Function Documentation

void checkNoGrows FILE *  OUTFILE,
PIX *  pixGel,
float **  PeakPosition,
float *  NodePosition,
struct GelInfo GelInfo,
struct AnaCutoff AnaCutoff,
int  Verbose
 

output the maxdiff and thresrough (threshold 1) of every lane suspected contaminated lanes is marked by negative thresrough

Parameters:
OUTFILE writable file stream for results output
pixGel pix representation of gel image used for analysis
PeakPosition holds y position of all nodes
NodePosition holds x position of nodes in each zone
GelInfo holds various gel constants
AnaCutoff holds various analysis cutoff constants
Verbose turns on text output on screen

void extractRow float **  laneintensity,
int  imageWidth,
int  imageHeight,
float *  median
 

go down an image and place the median value in each column into an array

Parameters:
laneintensity pointer to 2D array holding the straightened lane
imageWidth width of the 2D array
imageHeight height of the 2D array
median array of the median value in each column of the lane


Generated on Fri Apr 20 16:43:06 2007 for LaneRuler by  doxygen 1.3.9.1