00001 00010 #ifndef BORDER_H 00011 #define BORDER_H 00012 00013 #include "allheaders.h" 00014 #include "gelinfo.h" 00015 #include "anacutoff.h" 00016 00020 #define SIGMA_CUTOFF 4 00021 00024 #define FWHM_FACTOR 5.0/9.0 00025 00026 #define ZONE_PROJECTION_FACTOR 3 00027 00028 #define BORDERTOLERANCEFACTOR 0.4 00029 00032 #define OFFSETFACTOR 40 00033 00035 void findBorder (FILE *FLAGOUT_FILE, PIX *pixGel, INT32 **ZoneProjection, struct GelInfo *GelInfo, struct AnaCutoff *AnaCutoff, int *ToneAdjusted, int Verbose); 00037 float correlation(PIX *pixGel, int row1, int row2, int start, int stop, int maxoffset); 00039 float roughness (PIX *pixGel, int row, int start, int stop); 00040 #endif