#include "allheaders.h"
#include "gelinfo.h"
#include "anacutoff.h"
#include "readtiff.h"
#include "mapto8bits.h"
#include "medianfilter.h"
#include "zone.h"
#include "toneadjust.h"
#include "spacing.h"
#include "readlanes.h"
#include "position.h"
#include "diagnostic.h"
#include "border.h"
#include "node.h"
#include "checkresult.h"
#include "checknogrowths.h"
#include "noisedetect.h"
Go to the source code of this file.
Defines | |
#define | DEFAULT_NLANES 121 |
default number of expected lanes in the gel | |
#define | DEFAULT_MARKERPERIOD 5 |
default marker period of the gel | |
#define | DEFAULT_MARKEROFFSET 0 |
location of first marker lane | |
#define | DEFAULT_LASTMARKEROFFSET 0 |
distance from last marker to last lane | |
#define | DEFAULT_NZONES 10 |
default number of zones used for lane tracking | |
#define | DEFAULT_SIZEFACTOR 10 |
default factor which determines how big the structural element is for closing | |
#define | DEFAULT_WELL_EDGE 0 |
default position of the well edge (0=left, 1=top, 2=right, 3=bottom | |
#define | DEFAULT_GELSPANFACTOR 0.75 |
default fraction of the image that a gel is expected to take up | |
#define | DEFAULT_GELNAME "image.tif" |
default name of the image file | |
#define | DEFAULT_PROJECTDIR "." |
default project directory | |
#define | DEFAULT_MINPSIZEFACTOR 0.0 |
default minimum psize factor below which is peak is not accepted. | |
#define | DEFAULT_FLAGOUT_NAME "LR_data.out" |
dault name of the file to be used as a data dump | |
#define | DEFAULT_ERROROUT_NAME "LR_error.out" |
default name of the file to store error comment(s) | |
#define | DEFAULT_NOGROW_NAME "LR_no_grow.out" |
dault name of the file to store no grow detection results | |
#define | DEFAULT_TRACES_NAME "traces16_auto" |
default name for traces16 file | |
#define | DEFAULT_LANES_NAME "lanes" |
default names for output lanes file | |
#define | DEFAULT_IN_LANES_NAME "lanes" |
default names for input lanes file | |
#define | DEFAULT_LIMS_NAME "LR_LIMS.out" |
default name of the file to hold gel inspection parameters | |
Functions | |
PIX * | adjustTone (PIX *pixGel, INT32 **ZoneProjection, struct GelInfo *GelInfo, int *ZoneID, int *ToneAdjusted, int Verbose) |
for a given gel image tone adjust zones of low density using a point transformation with a monotonic Bezier curve |
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for a given gel image tone adjust zones of low density using a point transformation with a monotonic Bezier curve The bezier curve is adjusted using the mean intensity of the zone
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