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spacing.h File Reference

header file for spacing.c, contains algorithm for finding the dominant lane spacing in the gel as well as the dominant spacing of each zone More...

#include "fftw3.h"
#include "allheaders.h"
#include "gelinfo.h"

Go to the source code of this file.

Functions

float findSpacing (FILE *FLAGOUT_FILE, INT32 **ZoneProjection, struct GelInfo *GelInfo, float *Spacing, int Verbose)
 find lane spacing


Detailed Description

header file for spacing.c, contains algorithm for finding the dominant lane spacing in the gel as well as the dominant spacing of each zone


Function Documentation

float findSpacing FILE *  FLAGOUT_FILE,
INT32 **  ZoneProjection,
struct GelInfo GelInfo,
float *  Spacing,
int  Verbose
 

find lane spacing

returns -1 if no valid spacing found

Parameters:
FLAGOUT_FILE writable file handle to data log file
ZoneProjection points to 1D y-projection in each of the zone
GelInfo holds various gel parameters
Spacing points to array to hold dominant spacing for each zone
Verbose turn on text output to screen
Returns:
the generic lane spacing for the gel


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