00001
00005 #ifndef FINDLANES_H
00006 #define FINDLANES_H
00007
00009 #define DEFAULT_NLANES 121
00010
00011 #define DEFAULT_MARKERPERIOD 5
00012
00013 #define DEFAULT_MARKEROFFSET 0
00014
00015 #define DEFAULT_LASTMARKEROFFSET 0
00016
00017 #define DEFAULT_NZONES 10
00018
00019 #define DEFAULT_SIZEFACTOR 10
00020
00021 #define DEFAULT_WELL_EDGE 0
00022
00023 #define DEFAULT_GELSPANFACTOR 0.75
00024
00025 #define DEFAULT_GELNAME "image.tif"
00026
00027 #define DEFAULT_PROJECTDIR "."
00028
00029 #define DEFAULT_MINPSIZEFACTOR 0.0
00030
00031 #define DEFAULT_FLAGOUT_NAME "LR_data.out"
00032
00034 #define DEFAULT_ERROROUT_NAME "LR_error.out"
00035
00036 #define DEFAULT_NOGROW_NAME "LR_no_grow.out"
00037
00038 #define DEFAULT_TRACES_NAME "traces16_auto"
00039
00040 #define DEFAULT_LANES_NAME "lanes"
00041
00042 #define DEFAULT_IN_LANES_NAME "lanes"
00043
00044 #define DEFAULT_LIMS_NAME "LR_LIMS.out"
00045
00046 #include "allheaders.h"
00047
00048 #include "gelinfo.h"
00049
00050 #include "anacutoff.h"
00051
00052 #include "readtiff.h"
00053 #include "mapto8bits.h"
00054 #include "medianfilter.h"
00055 #include "zone.h"
00056 #include "toneadjust.h"
00057 #include "spacing.h"
00058 #include "readlanes.h"
00059 #include "position.h"
00060 #include "diagnostic.h"
00061 #include "border.h"
00062 #include "node.h"
00063 #include "checkresult.h"
00064 #include "checknogrowths.h"
00065 #include "noisedetect.h"
00066
00068 PIX *adjustTone(PIX *pixGel, INT32 **ZoneProjection, struct GelInfo *GelInfo, int *ZoneID, int *ToneAdjusted, int Verbose);
00069
00070 #endif
00071