This page last changed on Mar 06, 2007 by maising.
- If you have access to the pipeline validation DVD, run the validation script "validate.sh" on the test data. See the documentation that comes with the DVD for details.
- For the first run of the pipeline for a new instrument, make sure that you have set up the directory "Instruments" for calibration files as described in Pipeline usage.
- Copy the run data (which sits in a folder structure called the run-folder) to a location that is visible to the analysis pipeline and your analysis computing system.
- If you want to do sequence alignment you need to create a config file telling the pipeline what type of analysis against which targets to do for each lane. The format and contents of the config file ("config.txt") is described in GERALD User Guide and FAQ.
- Change into the newly created folder "Data/C1...Firecrest..."
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