If you are looking for the reference that was specified in your bam file and can find it in:

http://www.bcgsc.ca/downloads/genomes/

We apologize in advance.

Please contact the BioApplications Team at bioapps@bcgsc.ca with the subject line:

"Missing <reference> in http://www.bcgsc.ca/downloads/genomes/" where <reference> is the species that is absent from the downloads directory.

i.e. "Missing Saccharomyces_cerevisiae in http://www.bcgsc.ca/downloads/genomes/"

We will upload the reference and email you as soon as it is available.

Thank you.