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(vt <v< +LY=c<fkK^w<4&:yI' Yvyy&Y z9X@:>4;/[xJ~+KZuIS"YWrf"YWrf"YWf<p<Xk<vn.Xqy~\~tvsh~t_f~f^fvz.]~/?5f}}th}<}feglQsue`ztltYs>tgut~fgut{e f!:.|J^$<tؑ^)=;u zfz.B-K"z ~G[~v~Y*t~ $_\NDG6D`G*NYyD|Gss#!/ui~\{.#>:Ivegf\|Gsgu{<X5#J&${G.${G) XCYxtYtwK=]bYZ_a\":>Z_) %s="%s" %s RNAsubopthelpdetailed-helpfull-helpversionconstraintnoconvdeltaEnergydeltaEnergyPostsortedstochBTpfScalecircdoszukertempnoTetradanglesnoLPnoGUnoClosingGUlogMLparamFilenspw2.0.0%s %s %s %s --%s: option `%s' is ambiguous hVCe:sp:S:cDzT:4d:P:%s: invalid option -- %c 2%s: option unknown: %c%s Usage: RNAsubopt [OPTIONS]... General Options: Algorithms: Model Details:%s: cannot dump options to stream %s: `--%s' (`-%c') option given more than once%s %s: `--%s' option given more than once%s %s: invalid numeric value: %s %s: cannot open file for writing: %s %s: option `--%s' doesn't allow an argument %s: option `%c%s' doesn't allow an argument %s: option `%s' requires an argument %s: unrecognized option `--%s' %s: option requires an argument -- %c calculate suboptimal secondary structures of RNAsreads RNA sequences from stdin and (in the default -e mode) calculates all suboptimal secondary structures within a user defined energy range above the minimum free energy (mfe). It prints the suboptimal structures in dot-bracket notation followed by the energy in kcal/mol to stdout. Be careful, the number of structures returned grows exponentially with both sequence length and energy range. Alternatively, when used with the -p option, RNAsubopt produces Boltzmann weighted samples of secondary structures. -h, --help Print help and exit --detailed-help Print help, including all details and hidden options, and exit --full-help Print help, including hidden options, and exit -V, --version Print version and exit Below are command line options which alter the general behavior of this program -C, --constraint Calculate structures subject to constraints. (default=off) The program reads first the sequence, then a string containing constraints on the structure encoded with the symbols: . 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