ELF>@@ OF.vø.w+uG+FUHSH5HHHDŽ$HDŽ$HDŽ$HDŽ$~ H1DHcH9uD$C9E1AHH4H)HcHA~AIDȃtA뻸dD*$A*Y*HXYHYXY,H[]HH~@ǍPHÐ@H=1HHtH)1)AWIAVAUATUSHxAHEIfD(t91IfDHJ8IBDHT$8D$DDD$HH$D\$H B"D9)D$l$0D$4D|$4E~ DT$0D91|$4)D$4D$0;|$X+|$\+|$4D$0|$0Dt$4HEOT$49T$X|HcHD$`xu@.H9T$X}T$\9T$0Hcl$\|HD$hHxu@.H9T$0}1|$4~ D$4HHL$`HH4Hf&LT$hHJtH|$`H|$hHĘH[]A\A]A^A_Ãl$t&H$IH$DT$LD9T$|$4HHL$8HcD$TH5HT HHD+ DT$0D9~&HHL$@HcD$THT HHD+x |$T~D+`D9d>H=H=D\$D\$dH5yfAWIAVIAUE1ATUSHHH|$0HI/HHۉDŽ$tLHBIHHuD$1HtLHBHHu9$t H=HHt%H\fTf.vH=HcHDHE~<A=LHIHcH9-H}ϋ$HcHHD$XD$HD$`E~z11I<HcH9t H=I<HcH9t H=I<ރQHT$XI~A`AHID;$tSD;$~HT$hH-Ht$hHcLHcDHl$XHTH$HHT*HAx W9L$L~D$D$HL$LD\$PD$TH$H$H$l$HT$H$H$H$9*D$L$HT$XHL$`t$T|$P:I1;T$PD$P1|$T)D$Tu9~)HH<H9-}H=$~011L\$XI<HD$`HA=HAHHHcHD9%H}LL {HHHHt*H5LȃHF9APfGsLL{HHHHt*H5LȃHF9APfGsD EDŽ$D$X@BD$\D$`DŽ$HDŽ$HDŽ$D=L$H$IHEL\$@HD$8AGIcH5H$HHDŽ$HH$H$HH$HHL$@HL$H$HHI<{L\$8H 8H|$HH$J<HHȋD$dZL$Ad~%HH\$@HHHTHA D9=~(HL\$HcD$dJTHHAx |$d~ A`D$E$ A9‰D$THc\$dH$AWL$HD$pT$hHL$xH\$0|$h;=0Dl$pAE L$H$E1H$JX+CD';IHHCD% HJ0HH HHHHȋJD9NCD';DAtHD$pIHl$xD;T$THT$8$9=H$H ~7HcT$dHL\$@HcHJTHHHx At7HcT$dHH\$HcHHTHHH |$d~ H`;L$X}$L$XD|$`|$\H$H$H$An$$$9L\$8HD$@L$H$*D$X^D$lt$`|$\I1;T$\DD$\1|$`)D$`Eui~)HH<H9-}H=H=H=H=H=L\$HD$`T$\D$lACMcACAHL[]A\A]A^A_@BD$\D$`D$lAWAVAUAATIUdSHHxL$H|$PLHHD$(H|$XD$`H,A*1*XX,D$LHAE1AHcÉ\$LHHHD$HHD$@D$HT$8HD$0H\$EA@HHt$8H(HH 0HHHHȋ H\$Ht$@D;t$LH3hA~+HHt$8HcHHT2HHDx A~&HHcHHT*HHD ~HD`D;l$aED+D$T$0D$A)EDND)A9ANA9D$~D+t$T$AHT$NA9HcANLIcL FHL9*IB;I H99}AID;D$~Ë|$LD/HD$ HH5T$LADH81\$H;\${A*HcT$HD$LHt$(AL$\$HHRA9HANAOBHD$ YHBZBHHT$fAGAHA9HD$0Hl$8Hl$@l$L H5Ht$HD$H<HA9}Hcl$HHDmL$H=H=H=H=H=HDEtH|$(H HHT$(I@H@HxH[]A\A]A^A_d$H|$(Hct$H4vHHD$(`% : ; I$ > $ >   I : ;  : ;I8 &I : ; : ; I8 I !I/ & : ;  : ; I8 !I/ : ; .: ;' I@ : ;I 4: ;I.: ;' I@: ;I4: ;I 4: ;I4: ;I .: ; ' I@: ; I4: ; I 4: ; I : ; I!4: ; I".: ; ' @#: ;I$4: ;I% U&4: ; I '4: ; I(4: ; I ).? : ;' I@*4: ;I+.: ;' ,: ;I-.? : ; ' I@.1X Y /104114: ; I24: ; I? < $8intiih. b##### #(#0#8#@#H#P#X#`!#h#b#p'b#t)p#x-F#.T#/#3#<{#E#F#G#H#I-#Kb#M#n h  # # b#  y  idb# # # # # #  #  #  #  #  #  #L 4# b# lxc# b# r# b#ܨ b# b# # # # # # b   b  b    b   b     4b      bb       rb  b  b x b '   ib#jb# #  # l$bw$U$Td%b7b77bk<bl<bs<b<bX<bdm=#}Er@ b 9b  bcbposh hiM!lM!S["/-!i.b!j.bx #ib#jb#S1x #S2x kblb ~bEb$bi0b~j0bsb$bst1~st2~%pscb%LE b~  [b{ ibjb!kb!lb&bb!Eb'b(i0b!j0b(st1ď(st2ďď%!LEb) 4#s14s#s24si5bj5bs5b$5b*l15b5b5b5b6*mfe7S18 ~S28 ~9 ~%kVb*lVbEVbpscVb%hb)u u #s1s#s2sb#wbibjbn1bn2bb*Ebbbsb$b mfeu ~S1 S2 %iibjjbbEdbpscb+  ,s1 h,s2 h*i M*l M-Bs1Bhs2Bh!iCb!jCbl1CbCbCbCbDmfeE.{ R/ / %0 0 %VbVb!EVb!kVblVb-u s1hs2h bwb!ib!jb!n1b!n2b&b~Ebb&b~&~(mfe&u ~%b!iib!jjb!Edb , &A  &[   p[ &`  b  & &r   11(P6 (c8  (S19 (SS19 (S29 (SS29 (n1:b (n2:b &>b 2222 b2 b2*2 2)b2+2,^ ./../H/usr/include/usr/include/bits/usr/lib/gcc/x86_64-redhat-linux/4.1.2/includeduplex.cpair_mat.hduplex.hparams.hstdio.hlibio.htypes.hstddef.hfold_vars.h C)/KgJ tX ftt t-0;uMVc?G^Z{M <zW=/Y;=8=Mx. w. .~t.B-u-:<LWI-6O1P =e  WI-G6Hg3vggg5vyng3v y.zz<&LeJFY=0YIga9a<a< a <`J"^#<ɠVVKClv`"G1Wuuru;6-wvJj.)׼r>hu=6<4M$nc}PzfPeY88WZI;-Kgo,ot*n ln-KXr1נH>v=-.1#?ZJ-84j) w<z<^;g:h)L1[KsuAu-YYYG?IKrZEe-_J!X_!_J!'=4J0/=Ke"=Kex .P2tN.2JN3\M5AVVKw9Bv1(+=Wu;/=u=s4YSZ&%-ge= ֟-W=KW.;F v<z-xXRZYYM1!-KY-YY;YG?WKҖH>d.81==%u;ɓHY&K 6x#*HLUMgK/V=gI_$&׻WKKW[r)/u\JO1tPV>*q=YSf}f];g1[KsuC;/Y;u+/I=W/2;/Y;u+/I=W/~.Vm2Dk.kJWkXXK-Kʀ'1ue%2dX.-KXz1^z. Y9==j%Qe= futu Y-0$UJ1* tXQyXJQZYYg;,u;Y-=rf>>2Wu0,/dJd,bXb<JK#s"VZG!I/WIefI t,0rul K!Y?ư>.AY@Y@?{Gz?ư>?{Gz?What energy_set are YOU using??unequal number of sequences in alibacktrack() backtrack failed in fold duplexunequal number of sequences in aliduplexfold() backtrack failed in aliduplexuneqal seqence lengths%d %d %d @FB_ACGUTXKIx -$MAIPQD<BEB B(A0A8D@,HBKA A(D0<(BBB B(A0A8I<BBB B(A0A8G<9 BEE E(A0A8G<BBB E(I0C8G<YBBE E(A0A8G<YBBB E(D0F8LzRx -4MAIPTQD4lBEB B(A0A8D@$HBKA A(D04(BBB B(A0A8I4BBB B(A0A8G4<9 BEE E(A0A8G4tBBB E(I0C8G4YBBE E(A0A8G4YBBB E(D0F8L P"P$,P01w1:w:JwJ}w0MUM|V0CTC{SP PR}YQQq}QwwUPUTQQwwww w(w0w8jwUi_Pe] \Pc\prwr}w}~w~w w(w0tRPUP?U?\X\ePeXRRX P>Xt{UURQ?Q?PTPP>TtQQPPfmPwwww w(w0w8 wU ~T ~Q ~R ~ D  Q 9 Q@ }o QS( ~ j S4 S S ~ V ~ARAORhUXRV R / Ra R R SP _ _ w w w w w( w0  w8 w U ~  T ~ ~<QOQ V EVoUowQUUU >[[[[[; GGV SPPPPP7VPkPPwwww w(w0w8wT^^^Q_A__?VVP1V{V 6V6PV(VV~/D/\R\RR?VZTU1Q1OVTVTIPTt{TIV'T'AZT T }VVVVTZ~~~~~\~RBZRZ-Z'RyZRZ~%Qwww w w(w0w8"wU\ \ \!!\""\'T'] !]""]'Q'VV""V'R'"~  \!!\!]!"]"~"~"~"~"~^VY"R">URY+2RYd d Yd R !\!!Y!!R!!^""Y""R""U""^!V!"V"~"~"~$TaTd T!"TY9QaaYaQd d Yd Q"L"YL"]"Qn""Q"~SZzSZZd Z!!S!"ZPd h P""w""w""w""w ""w(""w0""w8"9*w"#T#&]'*] *9*]"#Q#r&^'*^ *9*^#$\$&D'B)\r)*V **\$ *_ **_$*~$*~&*9*~$*~.*9*~B)*\ $!$R!$)$Pf$}$R}$$P$U%R(9)R*9*P#.$S(w)S)*S*9*S$*~&&U&'U''Q''U$U%R(9)R$<&Z&N'Z'9)Z **Z@*B*wB*D*wD*F*wF*K*w K*O*w(O*U*w0U*a*w8a*.w@*]*U]**S@*j*Tj**\**U@*j*Qj*+]^-o.]@*j*Rj*.~*---V!+-\t..\**^**S*q.^t..^*s._t.._+!+!+t+S,-St..S!+R+Rg+,R^--R--R!+,X^--X--X!+!+T!+A+Q:,x,Tx,,Q^-^-T^--Q--T--Q!+!+S!+t+]+,S^--St..]V({ aliduplexfold aliduplex_subopt duplexfoldduplex_subopt,.G  4 G %  /Tr d !"##J$}$E$G$6$=$,$.$#!$####I%\% **%(|%%l%x%5+`-t.._shortbufthresh_IO_lock_tstderr$Id: duplex.c,v 1.8 2007/08/26 10:08:44 ivo Exp $_IO_buf_endnc_factencode_seqBP_pair_IO_write_endunsigned intLaw_and_Orderint22_flagsint11make_pair_matrixenergyshort intEminduplex_suboptn_maxint21alibacktracksubopt_sorted_posstdoutfloatnoGUdelay_freelong long unsigned intskip_offset_filenoMLbasesize_t_vtable_offsetcv_factscore_IO_read_baseenergy_set_IO_save_endMLinterncodesuboptdeltanonstandardsduplexTtypesi_mintemperaturealiascovscorechar_modealiduplexfold_IO_write_base_IO_read_ptrn_suboptinternal_loopsequencertypeTriloop_E_IO_markerTetraloopslong long int_IO_save_baseTETRA_ENERGYtraceddangle3dangle5_markersduplexfold_IO_backup_basestruc__pad1__pad2__pad3__pad4__pad5comparetype2unsigned charpairGNU C 4.1.2 20080704 (Red Hat 4.1.2-48)_IO_read_endlong intsub1sub2j_minpfreqTerminalAUduplex.cbacktrackstackn_seqaliduplex_suboptencode_char_lockMLclosinglong unsigned int_old_offsetstdin_IO_FILErcsidencode_seqstype_sbuf_IO_write_ptrmismatchHmismatchImismatchM__off_tsigned charhairpinF_ninioshort unsigned intDuplexInitdoubleTriloopspscore_chainstructure_flags2_cur_column_nextparamT_unused2_IO_buf_basebulge/projects/remc_bigdata/miR/ViennaRNA-1.8.5/lib__off64_tGCC: (GNU) 4.1.2 20080704 (Red Hat 4.1.2-48).symtab.strtab.shstrtab.rela.text.data.bss.debug_abbrev.rela.debug_info.rela.debug_line.rodata.cst8.rodata.str1.8.rodata.str1.1.rodata.cst16.rodata.cst4.rodata.rela.debug_frame.rela.eh_frame.debug_loc.rela.debug_pubnames.rela.debug_aranges.debug_ranges.debug_str.comment.note.GNU-stack @.0&. ,/x 1/D1(? UCbPaPJXn2J}2HK?K KK Mh(P@R'&gxZ x080x`0Q{4.&6C ؒU - 0M &Q2 @ KpH\`a *go  u(ptH P`hX   P p    ( 0 5 8   @ H# P)?FNVahou9 -3<"YG@*Yduplex.ccomparecovscoreC.102.5568encode_charLaw_and_Orderencode_seqmake_pair_matrixpairaliasBP_pairrtypealibacktrackn1n2cPbacktrackS1S2SS2SS1delay_free.LC1.LC0.LC2.LC3.LC4.LC5.LC6.LC7.LC8.LC9.LC11.LC10.LC13.LC14.LC15.LC16.LC17.LC18.LC20.LC19.LC21.LC22_GLOBAL_OFFSET_TABLE_memcpync_factcv_factenergy_setstrchrstrlenspace__ctype_toupper_locnoGUnonstandardsnrerrorLoopEnergystrcpystrcatfreealiduplexfoldtemperatureupdate_fold_paramsscale_parametersaliduplex_suboptstderrfprintfsubopt_sortedqsortxreallocduplexfoldduplex_subopt?#ND4,<-N E] F G#H#IJKw\ G\#$&( L$ M8.N|IdD\<D&\-<ipD\<lp8/=NClKJQpaJvJlp)D\pDh \  O D pt p{ W pw p JA PI Id Qq R~ R R  0 N l J p& JD ly p D L \\ppL\\'.d5TsOzDppJPIQRR T?pHd1N1NIlIpS2XN_s T34UVlJlDpDJlJ'JFIMlY5^NgInpz5NJlp\DDhpp8D\!O=DpD l*SVllDRlDR RR.R8RBRS67#J<ESRR89IIJJ&I75<NFIR5WNJ*\D X:Y; ; D R D R R!R!R!!R)!R0! Z6!c!["\#I #l#I#p#/# T;#<C#=J#UO#VV#a#lp#Jw#l~#D#p#D#J#l#I#L#J#T#L$%$I9$\A$JM$dV$\]$$l$p%DL%LX%\t%\%%T%p%d&p&p'L '\!'\7'>'dE'T'O'D'p'l(,(T@(Y(i(d}(((l")>;)lK)z)D)R)l)D)R)L)R)\)R)T)R)d)R*?f*J|**]*R*@*I*I*D8+\I+L]+\+T++d++, X,:,YA-AU-D-D-R-D-R-L-R-\-R-T.R .d.R. Z.@.[.\  . *3% *) *. *i9 *@ * G *xN *U *\\ *j *hq *T| ** * *  * * *2 *[ * *# *( *| *! *U0 *? *N *] *l *{ *Z * * * *p * * *R * * *( *8 * H *X *z * *o * *" * *6 * * *, *h; *J *HY *@h *6w *J * * * * * *p *b * *" *2 *B *R *zb *er * * * * *  *  *" *.6-B *qP *vg &q *}0} &I * & * & & &L & * * &  *> *IQY &f &k *u &oz *ij & *V &V & & *p &  &* &4 *@H P &^ &el &{ & &  &E & * * & & * &\ &  *= *H &f M )] & b )0q & *   & & & & &N * * &  &  *5 &w X *b & g )pu & *   & &@ & & & & * * & * &$! *{, &^1 *< &k *{ ) & & & ) * & *  " & & & *# &r1 &? &M &Q\ &k &p * { & *? & * &0 &U * * & * & * &) &N" )1 &s@ &E *MP &_ &o &W * * " 9* & &> & &  &f *$ &) *3 &8 *{B &G *Q &5i#q}$ )@ &X & ) * &I  * &n  &  &! *@*. &\! & "# &C"( *2 &"? &"L & #Y &E#g &{#u &#z *  *? & $ * * * )0 * &k$ &$ &% &%- *9#G *tS#q *}  *.` *_ *  *#H"P7XK``htpt *+ * * * *& * * * * * *a $ 4 $80\ $`| $ $p $, $0 l $p $ $", $0@* 80Xpp @x"@*