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You need to call pf_fold() before mean_bp_dist()backtrack failed, can't find split index can't backtrack without pf arrays. 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S P^ b , b c , c0 2 w2 4 w4 6 w6 8 w 8 9 w(9 : w0: > w8> Yw0 J U ,cKWcT,bKWb \ :\KY\ S 5R5S,ZKKSKWZS ] Y] ^ F^:^KY^,RKWR,aKWa`dwdw`oUoyQy{PQyQQyRPRwwww w(w0RPU46P6UXPXR#-R-=XMUPU~XUURQ4QTP#P-~TQQP4;PPww w  w  w(  w0 w8 wuUu^gVXVX*TPXmS'S'IVQ Su~uyQE_RrSHSrR} _qWb!&b2ncb 2 c2 2 bb s cEHSP~SS} ^}S9 S w !w""w""w""w" "w " "w( "#w0""U"#V##V}##P##U##P##UE"J"UM"Y"U\"h"U##U##T##w#$w##U##S#$U$ $S $$U$$w$$w$$w$$w $$w($$w0$!$w8!$|Dw$6$U6$|D|$6$T6$|D|x(>)R))R))Q))~192Q33Q33R#8#8~#8@~@@~@A~AAQBB~BBRBBQFCFCRFCpC~CCRCCQ)c5~c55R55T596T 77R#8#8Y#8O8V8:Vw:=;YA<o>Yo>>V>>T>>R>?RK?`?T`?v?R0@0@R0@0@V0@:@R@@T@@YSAgAYgAgARgAoAR~A~AR~A~AV~AARAATAATBC~FCC~CCTCDR**Qk+,[,,Z2-2-[2-`-Z`-g-R 1 2Qf22[22Q22[$3@3Qk33[33Q4c5R#8@|@A|BBQCCQ",,R2-`-R8@}@A},-U(E)T)*T33TBCTFCdCTCCT*$+TU+),TY--T--P--P)/1T922T293Tk33Tv;<R<<R{;=<[<<[)..)/T)/222T2559:Xw:<X<u=X=Q>XT>?XK?@X@AXSAoAX~AAXAAXBCFCCCDX,,P#8888Q@A%.O.P#8@8[:{;[;;Q;;P6<Q<PQ<\<P<=[T>S@[SAoA[~AA[AA[8@}@A}CD})Q+bU+-b2-s-b)/r/b02b 3J3bJ3W3af33b#89b:r;bk=?b0@^@b@AbWAoAb~AAbAAbAAbBCbFCuCbCCb33aCCaFCmCaCCa)Y1}Y192}922}22}2$3}$3k3}k33}37}7#8i#8:cw:w:iw:;c>5>a5>?c0@g@c@@i@Aa>A>Ac>ASAigAoAc~A~Ai~AAcAAiAAcBC}FCD}#8T:ew:@e@ AeSAoAe~AAeAAer;(=b)Q+cU+,c--.c./a/0a00b22c22a2 3bk33cAAcBCcFCuCcCCc#88P:;Po> ?PK?W?P 4A}CD}D0DQPDfDQ%%~%&Ue(s(U% 'Xe((X8'8'S8'8'Q8'8'U8'8'R8''Q''Q''U''R''Q''Q'(R(*(QO(O(QO(O(UO(`(Q3 5S>?SK??S~AASAAUAARAAQAASABQ-BVBXVBYBQbBfBQBBUBBQBBQBBRBBQBCSCCUCCXC%CQ%CFCUDDUDDRDDQADADQADADUADADRADPDQ%%R%%\%%R%&_&@&R&&_e(x(R%'e([AB[CFC[D0D[AD\D[8'e(YABYCFCYD0DYADfDY??S??V?0@R0@U@VU@m@QgAgARgAgAVgAoAS~AAQAASAAQbppm_symbol mean_bp_distpbacktrackR free_pf_arrays init_pf_fold update_pf_paramsA pf_foldst_back,|D7G|  s| 55!"("##-"#!"("##o##j#l#b#e#X#_#L#S#=#D#.#5##&#### #""""""""""""""""h""\"c"M"T"-"B"V%l(D|DCFCABV%&D|DCFCAB'l( ' 'g%%%C'C=BBB*B-B&&%& ' 'D|D'CFCC%CBBB-B=BA*B'l(o?@gAAo?@oAA@@@@expint11_shortbuf_IO_lock_tjames_rulestderr_IO_buf_endtempno_closingGUexpMLclosingBP_pairexpMLinternexpint21_IO_write_endunsigned intexpHairpinEnergy_flagsint21_37qqm1short intexpMLbaseprmlinit_lengthint22_Hexpint22pstrucprmtF_ninio37expmismatchHexpmismatchMbulge37_posstdoutmismatchM37floatnoGUlong long unsigned intexpstackprm_lexpinternalhairpin37_offsetprm_l1ptype_filenoscale_pf_paramsexphairpinno_closebacktrack_qm1size_ttype2_vtable_offsetexpdangle3expdangle5int21_H_IO_read_baseenergy_set_IO_save_endTriloop_E37codenonstandardsTETRA_ENERGY37$Id: part_func.c,v 1.20 2004/08/12 12:14:46 ivo Exp $st_backtemperaturemean_bp_distbacktrack_typealiascharupdate_pf_params/projects/remc_bigdata/miR/ViennaRNA-1.6.1/lib_modeTmeasureexpTriloopinit_tempstring_IO_write_base_IO_read_ptrenthalpiessequenceexpLoopEnergydo_backtrackrtypeiindx_IO_markerTetraloopslong long intexptetra_IO_save_basepbacktrack_markerstype_2part_func.csize_IO_backup_basedangle3_H__pad1__pad2__pad3__pad4__pad5stack37mismatchH37make_pair_matrixmake_ptypesdangle5_Hotypepf_foldexpbulgeunsigned charpairGNU C 4.1.2 20080704 (Red Hat 4.1.2-48)_IO_read_endbppm_symbollong intint22_37sprintf_bppmlengthdangle5_37ML_intern37expniniotetra_loopTETRA_ENTH37internal_loop37noLonelyPairsTerminalAUfree_pf_arraysexpTermAUbacktrackstartfree_energystackencode_char_locklong unsigned int_old_offsetmism_Hstdin_IO_FILEint11_37rcsidinit_pf_foldprm_MLbtypeqbt1_sbuf_IO_write_ptrlxc37Qmaxscaledanglesprmt1expmismatchIjindx__off_tpf_scaleML_BASE37signed charshort unsigned intdangle3_37MAX_NINIOLaw_and_OrderdoubleTriloops_chainstructure_flags2fold_constrainedML_closing37get_arrays_cur_columnntypemax_real_nextmismatchI37_unused2_IO_buf_baseint11_H__off64_tGCC: (GNU) 4.1.2 20080704 (Red Hat 4.1.2-48).symtab.strtab.shstrtab.rela.text.data.bss.debug_abbrev.rela.debug_info.rela.debug_line.rodata.cst8.rodata.str1.8.rodata.str1.1.rodata.cst16.rodata.rela.debug_frame.rela.eh_frame.debug_loc.rela.debug_pubnames.rela.debug_aranges.debug_ranges.debug_str.comment.note.GNU-stack @|D8h7&D ,D7 1DtDTH? &U_( P(4a@hn2h\}2Tk\kk  l@4po86PqG6080H80p0"_.)v  ` $7*@03(= NF TO`@\@1h@2q "2  zP 0@ @ @ 07 7777 7(707 > @@@ @*76x7:`PF THej*p x 7 @7H7P787@7p7`7h7X77    @   p       8& @, H2 P8 > (D 0J P XV `\ hb ph xn t z    x     G   3 / H !,4?FOS0 )^ekv} $1=HR\gr| Q ""#3$l ;DXfwpart_func.cexpLoopEnergyexpstackscaleexpbulgeexpTermAUexpint22expint21expmismatchIexpinternalexpninioexpint11expHairpinEnergyexphairpinexpmismatchHexptetraexpTriloopbacktrackpstrucqbptypeS1sequencertypejindxqmqm1backtrack_qm1expMLbaseexpMLinternexpdangle5expdangle3init_lengthqlnencode_charLaw_and_Ordermake_pair_matrixpairaliasBP_pairscale_pf_paramsinit_templxcexpMLclosingexpmismatchMqqqqq1qqmqqm1q1kprm_lprm_l1prmlSmsg.4359.LC1.LC2.LC6.LC7.LC9.LC10.LC12.LC13.LC14.LC15.LC16.LC21.LC22.LC23.LC24.LC17.LC18.LC19.LC20.LC25.LC27.LC28.LC29.LC30.LC31.LC32.LC37.LC39.LC40.LC38.LC41.LC44.LC45.LC46.LC47.LC49.LC53.LC42.LC34.LC36.LC35_GLOBAL_OFFSET_TABLE_no_closingGUbppm_symbolmean_bp_distpriindxnrerrortetra_loopstrncpyTetraloopsstrstrTriloopsurnpbacktrackstrlenspaceenergy_setstrchrnoGUnonstandardstemperaturepf_scaleTmeasurehairpin37expbulge37internal_loop37james_rulelxc37logF_ninio37MAX_NINIOTETRA_ENERGY37TETRA_ENTH37Triloop_E37ML_closing37ML_intern37TerminalAUML_BASE37dangle3_Hdangle5_37dangle3_37dangle5_Hdanglesenthalpiesstack37mism_HmismatchI37mismatchH37mismatchM37int11_Hint11_37int21_Hint21_37int22_37int22_Hsinfree_pf_arraysfreeinit_pf_foldst_backupdate_pf_paramspf_foldxrealloc__ctype_toupper_locnoLonelyPairsfold_constrainedsprintfstderrfprintfbacktrack_typedo_backtrackfwrite wh\ w|7<0$$)\ NT^\l<1<2"!L z {8M=|u0 }|79~C K{ ~  $J7dk {u77777778 { {7. $7H ,7{  $7 ,7 N |B 7P {\ c $7u ,7 / O4 |M [ m $7 w   7 ,74 {L 7S c <j | 7 7 # P( |A 7F L 7f p 7  t7 |7 7 t7|78 {B7L$W| o<77=QB|NRS|g CC CS f zS|&47>fm  ) 57=TMU^VyW|7 0X! 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