This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by ViennaRNA configure 1.6.1, which was generated by GNU Autoconf 2.59. Invocation command line was $ ./configure --prefix=/projects/remc_bigdata/miR/vRNA-1.6.1 ## --------- ## ## Platform. ## ## --------- ## hostname = xhost09.bcgsc.ca uname -m = x86_64 uname -r = 2.6.18-194.3.1.el5 uname -s = Linux uname -v = #1 SMP Thu May 13 13:08:30 EDT 2010 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/grobertson/linux_x86_64/zlib/zlib-1.2.5/lib PATH: /projects/remc_bigdata/miR/TargetMiner/TargetMiner PATH: /projects/remc_bigdata/miR/TargetMiner/TargetMiner/libsvm-2.88 PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/lib/python2.6/site-packages PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/lib PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/bin PATH: /home/grobertson/linux_x86_64/libxml2/libxml2-2.7.3/bin PATH: /home/grobertson/linux_x86_64/libxml2/libxml2-2.7.3/lib PATH: /home/grobertson/linux_x86_64/samtools/samtools-0.1.16 PATH: /home/grobertson/linux_x86_64/ruby/ruby-1.8.7-p302/bin PATH: /home/grobertson/linux_x86_64/ruby/rubygems-1.3.5/bin PATH: /home/grobertson/linux_x86_64/Git/git-1.6.5.1/bin PATH: /home/grobertson/bin/x86_64 PATH: /home/grobertson/linux_x86_64/pysam/pysam-0.2/pysam PATH: /home/grobertson/linux_x86_64/Pyrex/bin PATH: /home/grobertson/linux_x86_64/Hg/bin PATH: /home/grobertson/linux_x86_64/zlib/zlib-1.2.3 PATH: /home/grobertson/Pairagon/gmap-2007-09-28/bin PATH: /home/grobertson/linux_x86_64/glib/glib-2.20.3/bin PATH: /home/grobertson/linux_x86_64/Hg/mercurial-1.3.1 PATH: /home/grobertson/linux_x86_64/boost/boost_1_42_0/boost PATH: /home/grobertson/linux_x86_64/BLAT/blatSrc/bin/x86_64-redhat-linux-gnu PATH: /home/grobertson/linux_x86_64/perl_5.10/bin PATH: /usr/lib/pkgconfig PATH: /home/grobertson/linux_x86_64/R/R-2.13.0/bin PATH: /home/grobertson/linux_x86_64/R/R-2.13.0/etc PATH: /home/grobertson/apache-ant-1.7.1/bin PATH: /home/grobertson/linux_x86_64/Cufflinks/tophat-1.0.13/bin PATH: /home/grobertson/linux_x86_64/Cufflinks/bowtie-0.12.5 PATH: /home/grobertson/linux_x86_64/Cufflinks/cufflinks-0.8.2.Linux_x86_64 PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/bin PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/lib PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/include/gsl PATH: #{JAVA_HOME}/usr/bin PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /home/grobertson/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:1374: checking for a BSD-compatible install configure:1429: result: /usr/bin/install -c configure:1440: checking whether build environment is sane configure:1483: result: yes configure:1548: checking for gawk configure:1564: found /bin/gawk configure:1574: result: gawk configure:1584: checking whether make sets $(MAKE) configure:1604: result: yes configure:1773: checking if malloc debugging is wanted configure:1794: result: no configure:1842: checking build system type configure:1860: result: x86_64-unknown-linux-gnu configure:1868: checking host system type configure:1882: result: x86_64-unknown-linux-gnu configure:1937: checking for gcc configure:1953: found /usr/bin/gcc configure:1963: result: gcc configure:2207: checking for C compiler version configure:2210: gcc --version &5 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2213: $? = 0 configure:2215: gcc -v &5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-48) configure:2218: $? = 0 configure:2220: gcc -V &5 gcc: '-V' option must have argument configure:2223: $? = 1 configure:2246: checking for C compiler default output file name configure:2249: gcc conftest.c >&5 configure:2252: $? = 0 configure:2298: result: a.out configure:2303: checking whether the C compiler works configure:2309: ./a.out configure:2312: $? = 0 configure:2329: result: yes configure:2336: checking whether we are cross compiling configure:2338: result: no configure:2341: checking for suffix of executables configure:2343: gcc -o conftest conftest.c >&5 configure:2346: $? = 0 configure:2371: result: configure:2377: checking for suffix of object files configure:2398: gcc -c conftest.c >&5 configure:2401: $? = 0 configure:2423: result: o configure:2427: checking whether we are using the GNU C compiler configure:2451: gcc -c conftest.c >&5 configure:2457: $? = 0 configure:2461: test -z || test ! -s conftest.err configure:2464: $? = 0 configure:2467: test -s conftest.o configure:2470: $? = 0 configure:2483: result: yes configure:2489: checking whether gcc accepts -g configure:2510: gcc -c -g conftest.c >&5 configure:2516: $? = 0 configure:2520: test -z || test ! -s conftest.err configure:2523: $? = 0 configure:2526: test -s conftest.o configure:2529: $? = 0 configure:2540: result: yes configure:2557: checking for gcc option to accept ANSI C configure:2627: gcc -c -g -O2 conftest.c >&5 configure:2633: $? = 0 configure:2637: test -z || test ! -s conftest.err configure:2640: $? = 0 configure:2643: test -s conftest.o configure:2646: $? = 0 configure:2664: result: none needed configure:2682: gcc -c -g -O2 conftest.c >&5 conftest.c:2: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'me' configure:2688: $? = 1 configure: failed program was: | #ifndef __cplusplus | choke me | #endif configure:2832: checking for style of include used by make configure:2860: result: GNU configure:2888: checking dependency style of gcc configure:2978: result: gcc3 configure:2998: checking whether gcc accepts -fpic configure:3019: gcc -c -fpic conftest.c >&5 configure:3025: $? = 0 configure:3029: test -z || test ! -s conftest.err configure:3032: $? = 0 configure:3035: test -s conftest.o configure:3038: $? = 0 configure:3049: result: yes configure:3083: checking for a BSD-compatible install configure:3138: result: /usr/bin/install -c configure:3190: checking for ranlib configure:3206: found /usr/bin/ranlib configure:3217: result: ranlib configure:3232: checking for perl configure:3250: found /home/grobertson/linux_x86_64/perl_5.10/bin/perl configure:3262: result: /home/grobertson/linux_x86_64/perl_5.10/bin/perl configure:3365: checking how to run the C preprocessor configure:3400: gcc -E conftest.c configure:3406: $? = 0 configure:3438: gcc -E conftest.c conftest.c:12:28: error: ac_nonexistent.h: No such file or directory configure:3444: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "ViennaRNA" | #define PACKAGE_TARNAME "ViennaRNA" | #define PACKAGE_VERSION "1.6.1" | #define PACKAGE_STRING "ViennaRNA 1.6.1" | #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at" | #define PACKAGE "ViennaRNA" | #define VERSION "1.6.1" | #define UNUSED __attribute__ ((unused)) | /* end confdefs.h. */ | #include configure:3483: result: gcc -E configure:3507: gcc -E conftest.c configure:3513: $? = 0 configure:3545: gcc -E conftest.c conftest.c:12:28: error: ac_nonexistent.h: No such file or directory configure:3551: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "ViennaRNA" | #define PACKAGE_TARNAME "ViennaRNA" | #define PACKAGE_VERSION "1.6.1" | #define PACKAGE_STRING "ViennaRNA 1.6.1" | #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at" | #define PACKAGE "ViennaRNA" | #define VERSION "1.6.1" | #define UNUSED __attribute__ ((unused)) | /* end confdefs.h. */ | #include configure:3595: checking for egrep configure:3605: result: grep -E configure:3610: checking for ANSI C header files configure:3635: gcc -c -g -O2 conftest.c >&5 configure:3641: $? = 0 configure:3645: test -z || test ! -s conftest.err configure:3648: $? = 0 configure:3651: test -s conftest.o configure:3654: $? = 0 configure:3743: gcc -o conftest -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:29: warning: incompatible implicit declaration of built-in function 'exit' configure:3746: $? = 0 configure:3748: ./conftest configure:3751: $? = 0 configure:3766: result: yes configure:3790: checking for sys/types.h configure:3806: gcc -c -g -O2 conftest.c >&5 configure:3812: $? = 0 configure:3816: test -z || test ! -s conftest.err configure:3819: $? = 0 configure:3822: test -s conftest.o configure:3825: $? = 0 configure:3836: result: yes configure:3790: checking for sys/stat.h configure:3806: gcc -c -g -O2 conftest.c >&5 configure:3812: $? = 0 configure:3816: test -z || test ! -s conftest.err configure:3819: $? = 0 configure:3822: test -s conftest.o configure:3825: $? = 0 configure:3836: result: yes configure:3790: checking for stdlib.h configure:3806: gcc -c -g -O2 conftest.c >&5 configure:3812: $? = 0 configure:3816: test -z || test ! -s conftest.err configure:3819: $? = 0 configure:3822: test -s conftest.o configure:3825: $? = 0 configure:3836: result: yes configure:3790: checking for string.h configure:3806: gcc -c -g -O2 conftest.c >&5 configure:3812: $? = 0 configure:3816: test -z || test ! -s conftest.err configure:3819: $? = 0 configure:3822: test -s conftest.o configure:3825: $? = 0 configure:3836: result: yes configure:3790: checking for memory.h configure:3806: gcc -c -g -O2 conftest.c >&5 configure:3812: $? = 0 configure:3816: test -z || test ! -s conftest.err configure:3819: $? = 0 configure:3822: test -s conftest.o configure:3825: $? = 0 configure:3836: result: yes configure:3790: checking for strings.h configure:3806: gcc -c -g -O2 conftest.c >&5 configure:3812: $? = 0 configure:3816: test -z || test ! -s conftest.err configure:3819: $? = 0 configure:3822: test -s conftest.o configure:3825: $? = 0 configure:3836: result: yes configure:3790: checking for inttypes.h configure:3806: gcc -c -g -O2 conftest.c >&5 configure:3812: $? = 0 configure:3816: test -z || test ! -s conftest.err configure:3819: $? = 0 configure:3822: test -s conftest.o configure:3825: $? = 0 configure:3836: result: yes configure:3790: checking for stdint.h configure:3806: gcc -c -g -O2 conftest.c >&5 configure:3812: $? = 0 configure:3816: test -z || test ! -s conftest.err configure:3819: $? = 0 configure:3822: test -s conftest.o configure:3825: $? = 0 configure:3836: result: yes configure:3790: checking for unistd.h configure:3806: gcc -c -g -O2 conftest.c >&5 configure:3812: $? = 0 configure:3816: test -z || test ! -s conftest.err configure:3819: $? = 0 configure:3822: test -s conftest.o configure:3825: $? = 0 configure:3836: result: yes configure:3864: checking malloc.h usability configure:3876: gcc -c -g -O2 conftest.c >&5 configure:3882: $? = 0 configure:3886: test -z || test ! -s conftest.err configure:3889: $? = 0 configure:3892: test -s conftest.o configure:3895: $? = 0 configure:3905: result: yes configure:3909: checking malloc.h presence configure:3919: gcc -E conftest.c configure:3925: $? = 0 configure:3945: result: yes configure:3980: checking for malloc.h configure:3987: result: yes configure:3855: checking for strings.h configure:3860: result: yes configure:3855: checking for unistd.h configure:3860: result: yes configure:4001: checking for an ANSI C-conforming const configure:4068: gcc -c -g -O2 conftest.c >&5 configure:4074: $? = 0 configure:4078: test -z || test ! -s conftest.err configure:4081: $? = 0 configure:4084: test -s conftest.o configure:4087: $? = 0 configure:4098: result: yes configure:4108: checking for size_t configure:4132: gcc -c -g -O2 conftest.c >&5 configure:4138: $? = 0 configure:4142: test -z || test ! -s conftest.err configure:4145: $? = 0 configure:4148: test -s conftest.o configure:4151: $? = 0 configure:4162: result: yes configure:4174: checking for inline configure:4195: gcc -c -g -O2 conftest.c >&5 configure:4201: $? = 0 configure:4205: test -z || test ! -s conftest.err configure:4208: $? = 0 configure:4211: test -s conftest.o configure:4214: $? = 0 configure:4226: result: inline configure:4253: checking for strdup configure:4310: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:49: warning: conflicting types for built-in function 'strdup' configure:4316: $? = 0 configure:4320: test -z || test ! -s conftest.err configure:4323: $? = 0 configure:4326: test -s conftest configure:4329: $? = 0 configure:4341: result: yes configure:4253: checking for strstr configure:4310: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:50: warning: conflicting types for built-in function 'strstr' configure:4316: $? = 0 configure:4320: test -z || test ! -s conftest.err configure:4323: $? = 0 configure:4326: test -s conftest configure:4329: $? = 0 configure:4341: result: yes configure:4253: checking for strchr configure:4310: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:51: warning: conflicting types for built-in function 'strchr' configure:4316: $? = 0 configure:4320: test -z || test ! -s conftest.err configure:4323: $? = 0 configure:4326: test -s conftest configure:4329: $? = 0 configure:4341: result: yes configure:4253: checking for erand48 configure:4310: gcc -o conftest -g -O2 conftest.c >&5 configure:4316: $? = 0 configure:4320: test -z || test ! -s conftest.err configure:4323: $? = 0 configure:4326: test -s conftest configure:4329: $? = 0 configure:4341: result: yes configure:4491: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by ViennaRNA config.status 1.6.1, which was generated by GNU Autoconf 2.59. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on xhost09.bcgsc.ca config.status:732: creating Makefile config.status:732: creating ViennaRNA.spec config.status:732: creating Utils/Makefile config.status:732: creating Progs/Makefile config.status:732: creating lib/Makefile config.status:732: creating man/Makefile config.status:732: creating Cluster/Makefile config.status:732: creating H/Makefile config.status:732: creating Perl/Makefile config.status:732: creating man/RNAheat.1 config.status:732: creating man/RNAsubopt.1 config.status:732: creating man/RNAdistance.1 config.status:732: creating man/RNAinverse.1 config.status:732: creating man/RNAeval.1 config.status:732: creating man/RNAfold.1 config.status:732: creating man/RNApdist.1 config.status:732: creating man/RNAplot.1 config.status:732: creating man/RNALfold.1 config.status:732: creating man/RNAalifold.1 config.status:732: creating man/RNAduplex.1 config.status:732: creating man/RNAcofold.1 config.status:732: creating man/RNAplfold.1 config.status:836: creating config.h config.status:1138: executing depfiles commands configure:5865: configuring in RNAforester configure:5982: running /bin/sh './configure' --prefix=/projects/remc_bigdata/miR/vRNA-1.6.1 '--prefix=/projects/remc_bigdata/miR/vRNA-1.6.1' --cache-file=/dev/null --srcdir=. configure:5865: configuring in Kinfold configure:5982: running /bin/sh './configure' --prefix=/projects/remc_bigdata/miR/vRNA-1.6.1 '--prefix=/projects/remc_bigdata/miR/vRNA-1.6.1' --cache-file=/dev/null --srcdir=. configure:6018: Configure successful with the following options: Perl Extension: yes Analyse{Dists,Seqs}: no Kinfold: yes RNAforester: yes Files will be installed in the following directories: Executables: /projects/remc_bigdata/miR/vRNA-1.6.1/bin Libraries: /projects/remc_bigdata/miR/vRNA-1.6.1/lib Header files: /projects/remc_bigdata/miR/vRNA-1.6.1/include Extra Data: /projects/remc_bigdata/miR/vRNA-1.6.1/share Man pages: /projects/remc_bigdata/miR/vRNA-1.6.1/man ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_build_alias=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_FPIC_set= ac_cv_env_FPIC_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_exeext= ac_cv_func_erand48=yes ac_cv_func_strchr=yes ac_cv_func_strdup=yes ac_cv_func_strstr=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_host_alias=x86_64-unknown-linux-gnu ac_cv_objext=o ac_cv_path_PerlCmd=/home/grobertson/linux_x86_64/perl_5.10/bin/perl ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_cc_fpic=yes ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_prog_egrep='grep -E' ac_cv_prog_make_make_set=yes ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=gcc3 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/missing --run aclocal-1.9' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/missing --run tar' AUTOCONF='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/missing --run autoconf' AUTOHEADER='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/missing --run autoheader' AUTOMAKE='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/missing --run automake-1.9' AWK='gawk' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2' CPP='gcc -E' CPPFLAGS='' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='grep -E' EXEEXT='' FPIC='-fpic' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s' ISODATE='2011-06-24' LDFLAGS='' LIBOBJS='' LIBS='' LTLIBOBJS='' MAKEINFO='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/missing --run makeinfo' MAKE_CLUSTER_FALSE='' MAKE_CLUSTER_TRUE='#' MAKE_FORESTER_FALSE='#' MAKE_FORESTER_TRUE='' MAKE_KINFOLD_FALSE='#' MAKE_KINFOLD_TRUE='' MAKE_PERL_EXT_FALSE='#' MAKE_PERL_EXT_TRUE='' OBJEXT='o' PACKAGE='ViennaRNA' PACKAGE_BUGREPORT='rna@tbi.univie.ac.at' PACKAGE_NAME='ViennaRNA' PACKAGE_STRING='ViennaRNA 1.6.1' PACKAGE_TARNAME='ViennaRNA' PACKAGE_VERSION='1.6.1' PATH_SEPARATOR=':' PerlCmd='/home/grobertson/linux_x86_64/perl_5.10/bin/perl' RANLIB='ranlib' SET_MAKE='' SHELL='/bin/sh' STRIP='' VERSION='1.6.1' ac_ct_CC='gcc' ac_ct_RANLIB='ranlib' ac_ct_STRIP='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__include='include' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${prefix}/share' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' includedir='${prefix}/include' infodir='${prefix}/info' install_sh='/projects/remc_bigdata/miR/ViennaRNA-1.6.1/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localstatedir='${prefix}/var' mandir='${prefix}/man' mkdir_p='mkdir -p --' oldincludedir='/usr/include' prefix='/projects/remc_bigdata/miR/vRNA-1.6.1' program_transform_name='s,x,x,' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' RNAforester Kinfold' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define HAVE_ERAND48 1 #define HAVE_INTTYPES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STDINT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRCHR 1 #define HAVE_STRDUP 1 #define HAVE_STRINGS_H 1 #define HAVE_STRINGS_H 1 #define HAVE_STRING_H 1 #define HAVE_STRSTR 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_UNISTD_H 1 #define HAVE_UNISTD_H 1 #define PACKAGE "ViennaRNA" #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at" #define PACKAGE_NAME "ViennaRNA" #define PACKAGE_STRING "ViennaRNA 1.6.1" #define PACKAGE_TARNAME "ViennaRNA" #define PACKAGE_VERSION "1.6.1" #define STDC_HEADERS 1 #define UNUSED __attribute__ ((unused)) #define VERSION "1.6.1" configure: exit 0