This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by RNAforester configure 1.5, which was generated by GNU Autoconf 2.59. Invocation command line was $ ./configure --prefix=/projects/remc_bigdata/miR/vRNA-1.6.1 --prefix=/projects/remc_bigdata/miR/vRNA-1.6.1 --cache-file=/dev/null --srcdir=. ## --------- ## ## Platform. ## ## --------- ## hostname = xhost09.bcgsc.ca uname -m = x86_64 uname -r = 2.6.18-194.3.1.el5 uname -s = Linux uname -v = #1 SMP Thu May 13 13:08:30 EDT 2010 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/grobertson/linux_x86_64/zlib/zlib-1.2.5/lib PATH: /projects/remc_bigdata/miR/TargetMiner/TargetMiner PATH: /projects/remc_bigdata/miR/TargetMiner/TargetMiner/libsvm-2.88 PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/lib/python2.6/site-packages PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/lib PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/bin PATH: /home/grobertson/linux_x86_64/libxml2/libxml2-2.7.3/bin PATH: /home/grobertson/linux_x86_64/libxml2/libxml2-2.7.3/lib PATH: /home/grobertson/linux_x86_64/samtools/samtools-0.1.16 PATH: /home/grobertson/linux_x86_64/ruby/ruby-1.8.7-p302/bin PATH: /home/grobertson/linux_x86_64/ruby/rubygems-1.3.5/bin PATH: /home/grobertson/linux_x86_64/Git/git-1.6.5.1/bin PATH: /home/grobertson/bin/x86_64 PATH: /home/grobertson/linux_x86_64/pysam/pysam-0.2/pysam PATH: /home/grobertson/linux_x86_64/Pyrex/bin PATH: /home/grobertson/linux_x86_64/Hg/bin PATH: /home/grobertson/linux_x86_64/zlib/zlib-1.2.3 PATH: /home/grobertson/Pairagon/gmap-2007-09-28/bin PATH: /home/grobertson/linux_x86_64/glib/glib-2.20.3/bin PATH: /home/grobertson/linux_x86_64/Hg/mercurial-1.3.1 PATH: /home/grobertson/linux_x86_64/boost/boost_1_42_0/boost PATH: /home/grobertson/linux_x86_64/BLAT/blatSrc/bin/x86_64-redhat-linux-gnu PATH: /home/grobertson/linux_x86_64/perl_5.10/bin PATH: /usr/lib/pkgconfig PATH: /home/grobertson/linux_x86_64/R/R-2.13.0/bin PATH: /home/grobertson/linux_x86_64/R/R-2.13.0/etc PATH: /home/grobertson/apache-ant-1.7.1/bin PATH: /home/grobertson/linux_x86_64/Cufflinks/tophat-1.0.13/bin PATH: /home/grobertson/linux_x86_64/Cufflinks/bowtie-0.12.5 PATH: /home/grobertson/linux_x86_64/Cufflinks/cufflinks-0.8.2.Linux_x86_64 PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/bin PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/lib PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/include/gsl PATH: #{JAVA_HOME}/usr/bin PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /home/grobertson/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:1369: checking for a BSD-compatible install configure:1424: result: /usr/bin/install -c configure:1435: checking whether build environment is sane configure:1478: result: yes configure:1543: checking for gawk configure:1559: found /bin/gawk configure:1569: result: gawk configure:1579: checking whether make sets $(MAKE) configure:1599: result: yes configure:1823: checking for g++ configure:1839: found /usr/bin/g++ configure:1849: result: g++ configure:1865: checking for C++ compiler version configure:1868: g++ --version &5 g++ (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:1871: $? = 0 configure:1873: g++ -v &5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-48) configure:1876: $? = 0 configure:1878: g++ -V &5 g++: '-V' option must have argument configure:1881: $? = 1 configure:1904: checking for C++ compiler default output file name configure:1907: g++ conftest.cc >&5 configure:1910: $? = 0 configure:1956: result: a.out configure:1961: checking whether the C++ compiler works configure:1967: ./a.out configure:1970: $? = 0 configure:1987: result: yes configure:1994: checking whether we are cross compiling configure:1996: result: no configure:1999: checking for suffix of executables configure:2001: g++ -o conftest conftest.cc >&5 configure:2004: $? = 0 configure:2029: result: configure:2035: checking for suffix of object files configure:2056: g++ -c conftest.cc >&5 configure:2059: $? = 0 configure:2081: result: o configure:2085: checking whether we are using the GNU C++ compiler configure:2109: g++ -c conftest.cc >&5 configure:2115: $? = 0 configure:2119: test -z || test ! -s conftest.err configure:2122: $? = 0 configure:2125: test -s conftest.o configure:2128: $? = 0 configure:2141: result: yes configure:2147: checking whether g++ accepts -g configure:2168: g++ -c -g conftest.cc >&5 configure:2174: $? = 0 configure:2178: test -z || test ! -s conftest.err configure:2181: $? = 0 configure:2184: test -s conftest.o configure:2187: $? = 0 configure:2198: result: yes configure:2240: g++ -c -g -O2 conftest.cc >&5 configure:2246: $? = 0 configure:2250: test -z || test ! -s conftest.err configure:2253: $? = 0 configure:2256: test -s conftest.o configure:2259: $? = 0 configure:2285: g++ -c -g -O2 conftest.cc >&5 conftest.cc: In function 'int main()': conftest.cc:15: error: 'exit' was not declared in this scope configure:2291: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "RNAforester" | #define PACKAGE_TARNAME "RNAforester" | #define PACKAGE_VERSION "1.5" | #define PACKAGE_STRING "RNAforester 1.5" | #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de" | #define PACKAGE "RNAforester" | #define VERSION "1.5" | /* end confdefs.h. */ | | int | main () | { | exit (42); | ; | return 0; | } configure:2240: g++ -c -g -O2 conftest.cc >&5 configure:2246: $? = 0 configure:2250: test -z || test ! -s conftest.err configure:2253: $? = 0 configure:2256: test -s conftest.o configure:2259: $? = 0 configure:2285: g++ -c -g -O2 conftest.cc >&5 configure:2291: $? = 0 configure:2295: test -z || test ! -s conftest.err configure:2298: $? = 0 configure:2301: test -s conftest.o configure:2304: $? = 0 configure:2338: checking for style of include used by make configure:2366: result: GNU configure:2394: checking dependency style of g++ configure:2484: result: gcc3 configure:2547: checking for gcc configure:2563: found /usr/bin/gcc configure:2573: result: gcc configure:2817: checking for C compiler version configure:2820: gcc --version &5 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2823: $? = 0 configure:2825: gcc -v &5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-48) configure:2828: $? = 0 configure:2830: gcc -V &5 gcc: '-V' option must have argument configure:2833: $? = 1 configure:2836: checking whether we are using the GNU C compiler configure:2860: gcc -c conftest.c >&5 configure:2866: $? = 0 configure:2870: test -z || test ! -s conftest.err configure:2873: $? = 0 configure:2876: test -s conftest.o configure:2879: $? = 0 configure:2892: result: yes configure:2898: checking whether gcc accepts -g configure:2919: gcc -c -g conftest.c >&5 configure:2925: $? = 0 configure:2929: test -z || test ! -s conftest.err configure:2932: $? = 0 configure:2935: test -s conftest.o configure:2938: $? = 0 configure:2949: result: yes configure:2966: checking for gcc option to accept ANSI C configure:3036: gcc -c -g -O2 conftest.c >&5 configure:3042: $? = 0 configure:3046: test -z || test ! -s conftest.err configure:3049: $? = 0 configure:3052: test -s conftest.o configure:3055: $? = 0 configure:3073: result: none needed configure:3091: gcc -c -g -O2 conftest.c >&5 conftest.c:2: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'me' configure:3097: $? = 1 configure: failed program was: | #ifndef __cplusplus | choke me | #endif configure:3232: checking dependency style of gcc configure:3322: result: gcc3 configure:3364: result: using (to be built) libRNA.a in ../lib configure:3376: checking for gdImageLine in -lgd configure:3406: g++ -o conftest -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ -L../../lib conftest.cc -lgd -lRNA >&5 /usr/bin/ld: cannot find -lRNA collect2: ld returned 1 exit status configure:3412: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "RNAforester" | #define PACKAGE_TARNAME "RNAforester" | #define PACKAGE_VERSION "1.5" | #define PACKAGE_STRING "RNAforester 1.5" | #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de" | #define PACKAGE "RNAforester" | #define VERSION "1.5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define HAVE_LIBRNA 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char gdImageLine (); | int | main () | { | gdImageLine (); | ; | return 0; | } configure:3438: result: no configure:3455: checking how to run the C++ preprocessor configure:3486: g++ -E -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc configure:3492: $? = 0 configure:3524: g++ -E -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc conftest.cc:15:28: error: ac_nonexistent.h: No such file or directory configure:3530: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "RNAforester" | #define PACKAGE_TARNAME "RNAforester" | #define PACKAGE_VERSION "1.5" | #define PACKAGE_STRING "RNAforester 1.5" | #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de" | #define PACKAGE "RNAforester" | #define VERSION "1.5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define HAVE_LIBRNA 1 | /* end confdefs.h. */ | #include configure:3569: result: g++ -E configure:3593: g++ -E -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc configure:3599: $? = 0 configure:3631: g++ -E -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc conftest.cc:15:28: error: ac_nonexistent.h: No such file or directory configure:3637: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "RNAforester" | #define PACKAGE_TARNAME "RNAforester" | #define PACKAGE_VERSION "1.5" | #define PACKAGE_STRING "RNAforester 1.5" | #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de" | #define PACKAGE "RNAforester" | #define VERSION "1.5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define HAVE_LIBRNA 1 | /* end confdefs.h. */ | #include configure:3681: checking for egrep configure:3691: result: grep -E configure:3696: checking for ANSI C header files configure:3721: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc >&5 configure:3727: $? = 0 configure:3731: test -z || test ! -s conftest.err configure:3734: $? = 0 configure:3737: test -s conftest.o configure:3740: $? = 0 configure:3829: g++ -o conftest -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ -L../../lib conftest.cc -lRNA >&5 /usr/bin/ld: cannot find -lRNA collect2: ld returned 1 exit status configure:3832: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "RNAforester" | #define PACKAGE_TARNAME "RNAforester" | #define PACKAGE_VERSION "1.5" | #define PACKAGE_STRING "RNAforester 1.5" | #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de" | #define PACKAGE "RNAforester" | #define VERSION "1.5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define HAVE_LIBRNA 1 | /* end confdefs.h. */ | #include | #if ((' ' & 0x0FF) == 0x020) | # define ISLOWER(c) ('a' <= (c) && (c) <= 'z') | # define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) | #else | # define ISLOWER(c) (('a' <= (c) && (c) <= 'i') || ('j' <= (c) && (c) <= 'r') || ('s' <= (c) && (c) <= 'z')) | # define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c)) | #endif | | #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) | int | main () | { | int i; | for (i = 0; i < 256; i++) | if (XOR (islower (i), ISLOWER (i)) | || toupper (i) != TOUPPER (i)) | exit(2); | exit (0); | } configure:3852: result: no configure:3876: checking for sys/types.h configure:3892: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc >&5 configure:3898: $? = 0 configure:3902: test -z || test ! -s conftest.err configure:3905: $? = 0 configure:3908: test -s conftest.o configure:3911: $? = 0 configure:3922: result: yes configure:3876: checking for sys/stat.h configure:3892: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc >&5 configure:3898: $? = 0 configure:3902: test -z || test ! -s conftest.err configure:3905: $? = 0 configure:3908: test -s conftest.o configure:3911: $? = 0 configure:3922: result: yes configure:3876: checking for stdlib.h configure:3892: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc >&5 configure:3898: $? = 0 configure:3902: test -z || test ! -s conftest.err configure:3905: $? = 0 configure:3908: test -s conftest.o configure:3911: $? = 0 configure:3922: result: yes configure:3876: checking for string.h configure:3892: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc >&5 configure:3898: $? = 0 configure:3902: test -z || test ! -s conftest.err configure:3905: $? = 0 configure:3908: test -s conftest.o configure:3911: $? = 0 configure:3922: result: yes configure:3876: checking for memory.h configure:3892: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc >&5 configure:3898: $? = 0 configure:3902: test -z || test ! -s conftest.err configure:3905: $? = 0 configure:3908: test -s conftest.o configure:3911: $? = 0 configure:3922: result: yes configure:3876: checking for strings.h configure:3892: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc >&5 configure:3898: $? = 0 configure:3902: test -z || test ! -s conftest.err configure:3905: $? = 0 configure:3908: test -s conftest.o configure:3911: $? = 0 configure:3922: result: yes configure:3876: checking for inttypes.h configure:3892: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc >&5 configure:3898: $? = 0 configure:3902: test -z || test ! -s conftest.err configure:3905: $? = 0 configure:3908: test -s conftest.o configure:3911: $? = 0 configure:3922: result: yes configure:3876: checking for stdint.h configure:3892: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc >&5 configure:3898: $? = 0 configure:3902: test -z || test ! -s conftest.err configure:3905: $? = 0 configure:3908: test -s conftest.o configure:3911: $? = 0 configure:3922: result: yes configure:3876: checking for unistd.h configure:3892: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc >&5 configure:3898: $? = 0 configure:3902: test -z || test ! -s conftest.err configure:3905: $? = 0 configure:3908: test -s conftest.o configure:3911: $? = 0 configure:3922: result: yes configure:3944: checking g2.h usability configure:3956: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc >&5 configure:3962: $? = 0 configure:3966: test -z || test ! -s conftest.err configure:3969: $? = 0 configure:3972: test -s conftest.o configure:3975: $? = 0 configure:3985: result: yes configure:3989: checking g2.h presence configure:3999: g++ -E -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc configure:4005: $? = 0 configure:4025: result: yes configure:4060: checking for g2.h configure:4067: result: yes configure:4084: checking for an ANSI C-conforming const configure:4151: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc >&5 configure:4157: $? = 0 configure:4161: test -z || test ! -s conftest.err configure:4164: $? = 0 configure:4167: test -s conftest.o configure:4170: $? = 0 configure:4181: result: yes configure:4191: checking for inline configure:4212: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc >&5 configure:4218: $? = 0 configure:4222: test -z || test ! -s conftest.err configure:4225: $? = 0 configure:4228: test -s conftest.o configure:4231: $? = 0 configure:4243: result: inline configure:4262: checking for size_t configure:4286: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/ conftest.cc >&5 configure:4292: $? = 0 configure:4296: test -z || test ! -s conftest.err configure:4299: $? = 0 configure:4302: test -s conftest.o configure:4305: $? = 0 configure:4316: result: yes configure:4463: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by RNAforester config.status 1.5, which was generated by GNU Autoconf 2.59. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on xhost09.bcgsc.ca config.status:698: creating Makefile config.status:698: creating src/Makefile config.status:698: creating man/Makefile config.status:802: creating config.h config.status:1090: executing depfiles commands configure:5803: configuring in g2-0.70 configure:5920: running /bin/sh './configure' --prefix=/projects/remc_bigdata/miR/vRNA-1.6.1 '--prefix=/projects/remc_bigdata/miR/vRNA-1.6.1' '--cache-file=/dev/null' '--srcdir=.' --cache-file=/dev/null --srcdir=. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_cxx_compiler_gnu=yes ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_exeext= ac_cv_header_g2_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=no ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_lib_gd_gdImageLine=no ac_cv_objext=o ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=gawk ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_prog_cxx_g=yes ac_cv_prog_egrep='grep -E' ac_cv_prog_make_make_set=yes ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/RNAforester/missing --run aclocal-1.9' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/RNAforester/missing --run tar' AUTOCONF='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/RNAforester/missing --run autoconf' AUTOHEADER='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/RNAforester/missing --run autoheader' AUTOMAKE='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/RNAforester/missing --run automake-1.9' AWK='gawk' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2' CPPFLAGS=' -I../g2-0.70/include/' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='grep -E' EXEEXT='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s' LDFLAGS='-L../g2-0.70 -L../../lib ' LIBOBJS='' LIBS='-lg2 -lRNA ' LTLIBOBJS='' MAKEINFO='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/RNAforester/missing --run makeinfo' OBJEXT='o' PACKAGE='RNAforester' PACKAGE_BUGREPORT='mhoechsm@techfak.uni-bielefeld.de' PACKAGE_NAME='RNAforester' PACKAGE_STRING='RNAforester 1.5' PACKAGE_TARNAME='RNAforester' PACKAGE_VERSION='1.5' PATH_SEPARATOR=':' SET_MAKE='' SHELL='/bin/sh' STRIP='' VERSION='1.5' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_STRIP='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build_alias='' datadir='${prefix}/share' exec_prefix='${prefix}' host_alias='' includedir='${prefix}/include' infodir='${prefix}/info' install_sh='/projects/remc_bigdata/miR/ViennaRNA-1.6.1/RNAforester/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localstatedir='${prefix}/var' mandir='${prefix}/man' mkdir_p='mkdir -p --' oldincludedir='/usr/include' prefix='/projects/remc_bigdata/miR/vRNA-1.6.1' program_transform_name='s,x,x,' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' g2-0.70' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define HAVE_INTTYPES_H 1 #define HAVE_LIBG2 1 #define HAVE_LIBRNA 1 #define HAVE_MEMORY_H 1 #define HAVE_STDINT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRINGS_H 1 #define HAVE_STRING_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_UNISTD_H 1 #define PACKAGE "RNAforester" #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de" #define PACKAGE_NAME "RNAforester" #define PACKAGE_STRING "RNAforester 1.5" #define PACKAGE_TARNAME "RNAforester" #define PACKAGE_VERSION "1.5" #define VERSION "1.5" #endif #ifdef __cplusplus extern "C" void std::exit (int) throw (); using std::exit; configure: exit 0