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%! ,! b"!-!-#!s!b" !-!-#!s!b"F !(-!(-#!(s!(b"~ !0-!0-#!0s!0b" !5-!5-#!5s!5b" !:-!:-#!:s!:b"& !A-!A-#!As!Ab"^ !M-!M-#!Ms!Mb" !Y-!Y-#!Ys!Yb" !]-!]-#!]s!]b" !a-!a-#!as!ab#!e-!e-#!es!eb DDbD$ E% %&':G(X(L )d)n)z))F * * +), *8  *+ *7 +)D *P  *c *o +)| * +* * +) *   ) 2, N  ;-msg8  s  .*  c ////$/2b0GSVE3 0GAVF 0GTVG m /usr/include/usr/include/bits/usr/lib/gcc/x86_64-redhat-linux/4.1.2/include.globals.cstdio.hlibio.htypes.hstddef.hgetopt.hglobals.h 0ZY=2%-=-3; gh  cX*` kt3 XK\&X-YY7h-ue@W-K0QI.}<.}<X}XJ}XJuuuuuY;ug;ugW=;ugWK;ug}. ) $C#K$ $ HAA%a(sYu.0`-q-}/ <$<Y<Z<!<K*'#-ɴz(/ <8O<<x#%s #%s (%6.2f) #%s (%6.2f) X%02d (%-5hu %5hu %5hu)seedclock%hu %hu %humetKawasakiMetropolislogMLlinearlogarithmicstartOpenChaininput filestophae?MfeUsage: %s [OPTION] < FILE globals.cGAV.ParamFile != ((void *)0)GAV.BaseName != ((void *)0)GAV.stopform != ((void *)0)dangle%dTemp%fPar%ssilentverbose%hu=%hu=%hutime%lfnumlogcutgrowglenhnoShiftnoLPfptlminhelp#< #Date: %s#EnergyModel: dangle=%d Temp=%.1f logML=%s Par=%s #MoveSet: noShift=%s noLP=%s #Simulation: num=%d time=%.2f seed=%s fpt=%s mc=%s #Output: log=%s silent=%s lmin=%s cut=%.2f %s - Kinetic Folding Program for Nucleic Acids - Options: EnergyModel --dangle <0|1|2> set dangling end model to (non|normal|double) --Temp set simulation temperature to --Par use energy-parameter-file --logML use linear multiloop-function not logarithmic MoveSet --noShift turn off shift-moves --noLP forbit structures with isolated base-pairs Simulation --seed set random seed to --time set maxtime of simulation to --num set number of simulations to --start set start structure --stop set stop structure(s) --met use Metropolis rule not Kawasaki rule --fpt stop stop structure(s) is reached --grow grow chain every time steps Output --log set basename of log-file to --err set basename of error-log-file to --silent no output to stdout --verbose more information to stdout --lmin output only local minima to stdout --cut output structures with E <= to stdout Default Settings: EnergyModel --dangle = %d --Temp = %.2f --Par = %s --logML = %s MoveSet --noShift = %s --noLP = %s Simulation --seed = %s --time = %.1f --num = %d --start = %s --stop = %s --met = %s --fpt = %s Output --log = %s --silent = %s --verbose = %s --lmin = %s --cut = %.2f Input File Format: 1st line sequence 2nd line start structure (if option --start is used) following lines stop structures GAV.ProgramName != ((void *)0)Value of --dangle must be 0|1|2 >%d< Value of --Temp must be >= 0 >%.2f< Value of --time must be > 0 >%lf< Value of --num must be > 0 >%d< ini_garrayshx $BaD pD$g$AAD $<l4<BOE A(H0L`zRx BaD <pD$Tg|AAD $<l,<BOE A(H0L`w#w#'w'w ,U,\U8Vw wU6XJ XTEYJ Y GwGw ZUZ~wwww rVwwUwwww w(+w0+<wU V <V'T' S <S ' P) > P P PLH    Y DY s Ys | P| Y D Y D Y  D C YC _ D_ Y D Y D Y D Y D1Y1MDMgYgD v Q Q 9 Q Qv QQ QMTQQ Q Q Qvlog_start_stop*log_prog_paramsZclean_up_globals; decode_switches GSV GAV GTV,<pp<+"' < "' g1M$,  s { C ` k s N R ` 2 < D  u Q Y  0 _shortbuf_IO_lock_t__pad5stderr_IO_buf_end_IO_write_endunsigned int_flagslminlogMLfarbe_GlobArrays_markersnoLP__s1prevformstopEini_globslog_start_stop_posstdoutstopfloat$Id: globals.c,v 1.5 2005/02/18 13:29:04 ivo Exp $silentstdin_GlobToogleslog_prog_paramslong long unsigned intclean_up_globalsglobals.cGlobVars_offsettimeProgramNamestartform_fileno_GlobVarssize_t_vtable_offset_IO_read_baseargc_IO_save_endTempprocess_optionsdecode_switchesini_gvars__s1_lenchar_modeitmpcurrform_IO_write_base_IO_read_ptrdanglestatus_IO_markerlong long int__s2_len_IO_save_basenoShiftstepsini_gtogglesdtmpstopformstartEsimTimeglen_IO_backup_baseoptindshort int__pad1__pad2__pad3__pad4seedoptiongrowwhichargv/projects/remc_bigdata/miR/ViennaRNA-1.6.1/Kinfold__resultunsigned charGNU C 4.1.2 20080704 (Red Hat 4.1.2-48)_IO_read_endoptarglong intftmpGlobArraysParamFileGlobTogglescurrEflagBaseNameusagesubinamestartfarbe_full_locklong unsigned int_old_offsetoption_index_IO_FILEdisplay_fileformatrcsidoptval_sbuf_IO_write_ptrlong_optionsmaxS__off_tverbosesigned charshort unsigned int__PRETTY_FUNCTION__double_chaindisplay_settingsFILE_flags2has_arg_cur_column_next__off64_t_unused2_IO_buf_baseini_garraysGCC: (GNU) 4.1.2 20080704 (Red Hat 4.1.2-48).symtab.strtab.shstrtab.rela.text.data.bss.debug_abbrev.rela.debug_info.rela.debug_line.rodata.str1.1.rodata.str1.8.rela.rodata.rela.debug_frame.rela.eh_frame.debug_loc.rela.debug_pubnames.rela.debug_aranges.debug_ranges.debug_str.comment.note.GNU-stack @<Sp& ,`1`wD?mPU!qP؆a2Y$p2%9@.   1 02Ȋ 31;zX;0p0;p0K?#nD.DD0M Q p < *  C MH 3N ^T bZ f`o Hs Xw  4<globals.cverbosemsgusagelong_options__PRETTY_FUNCTION__.4238.LC6.LC43.LC52.LC54.LC55log_start_stopGSVGAVfprintffflushsprintflog_prog_paramsGTVtime_stampclean_up_globalsfreestderrfwriteexitdecode_switchescallocstrcpygetopt_longoptargsscanf__assert_fail  $ (!.C ,K [ Dn!t} N L P $! 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