This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by Kinfold configure 1.0, which was generated by GNU Autoconf 2.59. Invocation command line was $ ./configure --prefix=/projects/remc_bigdata/miR/vRNA-1.6.1 --prefix=/projects/remc_bigdata/miR/vRNA-1.6.1 --cache-file=/dev/null --srcdir=. ## --------- ## ## Platform. ## ## --------- ## hostname = xhost09.bcgsc.ca uname -m = x86_64 uname -r = 2.6.18-194.3.1.el5 uname -s = Linux uname -v = #1 SMP Thu May 13 13:08:30 EDT 2010 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/grobertson/linux_x86_64/zlib/zlib-1.2.5/lib PATH: /projects/remc_bigdata/miR/TargetMiner/TargetMiner PATH: /projects/remc_bigdata/miR/TargetMiner/TargetMiner/libsvm-2.88 PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/lib/python2.6/site-packages PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/lib PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/bin PATH: /home/grobertson/linux_x86_64/libxml2/libxml2-2.7.3/bin PATH: /home/grobertson/linux_x86_64/libxml2/libxml2-2.7.3/lib PATH: /home/grobertson/linux_x86_64/samtools/samtools-0.1.16 PATH: /home/grobertson/linux_x86_64/ruby/ruby-1.8.7-p302/bin PATH: /home/grobertson/linux_x86_64/ruby/rubygems-1.3.5/bin PATH: /home/grobertson/linux_x86_64/Git/git-1.6.5.1/bin PATH: /home/grobertson/bin/x86_64 PATH: /home/grobertson/linux_x86_64/pysam/pysam-0.2/pysam PATH: /home/grobertson/linux_x86_64/Pyrex/bin PATH: /home/grobertson/linux_x86_64/Hg/bin PATH: /home/grobertson/linux_x86_64/zlib/zlib-1.2.3 PATH: /home/grobertson/Pairagon/gmap-2007-09-28/bin PATH: /home/grobertson/linux_x86_64/glib/glib-2.20.3/bin PATH: /home/grobertson/linux_x86_64/Hg/mercurial-1.3.1 PATH: /home/grobertson/linux_x86_64/boost/boost_1_42_0/boost PATH: /home/grobertson/linux_x86_64/BLAT/blatSrc/bin/x86_64-redhat-linux-gnu PATH: /home/grobertson/linux_x86_64/perl_5.10/bin PATH: /usr/lib/pkgconfig PATH: /home/grobertson/linux_x86_64/R/R-2.13.0/bin PATH: /home/grobertson/linux_x86_64/R/R-2.13.0/etc PATH: /home/grobertson/apache-ant-1.7.1/bin PATH: /home/grobertson/linux_x86_64/Cufflinks/tophat-1.0.13/bin PATH: /home/grobertson/linux_x86_64/Cufflinks/bowtie-0.12.5 PATH: /home/grobertson/linux_x86_64/Cufflinks/cufflinks-0.8.2.Linux_x86_64 PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/bin PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/lib PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/include/gsl PATH: #{JAVA_HOME}/usr/bin PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /home/grobertson/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:1364: checking for a BSD-compatible install configure:1419: result: /usr/bin/install -c configure:1430: checking whether build environment is sane configure:1473: result: yes configure:1538: checking for gawk configure:1554: found /bin/gawk configure:1564: result: gawk configure:1574: checking whether make sets $(MAKE) configure:1594: result: yes configure:1763: checking if malloc debugging is wanted configure:1784: result: no configure:1835: checking for gcc configure:1851: found /usr/bin/gcc configure:1861: result: gcc configure:2105: checking for C compiler version configure:2108: gcc --version &5 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2111: $? = 0 configure:2113: gcc -v &5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-48) configure:2116: $? = 0 configure:2118: gcc -V &5 gcc: '-V' option must have argument configure:2121: $? = 1 configure:2144: checking for C compiler default output file name configure:2147: gcc conftest.c >&5 configure:2150: $? = 0 configure:2196: result: a.out configure:2201: checking whether the C compiler works configure:2207: ./a.out configure:2210: $? = 0 configure:2227: result: yes configure:2234: checking whether we are cross compiling configure:2236: result: no configure:2239: checking for suffix of executables configure:2241: gcc -o conftest conftest.c >&5 configure:2244: $? = 0 configure:2269: result: configure:2275: checking for suffix of object files configure:2296: gcc -c conftest.c >&5 configure:2299: $? = 0 configure:2321: result: o configure:2325: checking whether we are using the GNU C compiler configure:2349: gcc -c conftest.c >&5 configure:2355: $? = 0 configure:2359: test -z || test ! -s conftest.err configure:2362: $? = 0 configure:2365: test -s conftest.o configure:2368: $? = 0 configure:2381: result: yes configure:2387: checking whether gcc accepts -g configure:2408: gcc -c -g conftest.c >&5 configure:2414: $? = 0 configure:2418: test -z || test ! -s conftest.err configure:2421: $? = 0 configure:2424: test -s conftest.o configure:2427: $? = 0 configure:2438: result: yes configure:2455: checking for gcc option to accept ANSI C configure:2525: gcc -c -g -O2 conftest.c >&5 configure:2531: $? = 0 configure:2535: test -z || test ! -s conftest.err configure:2538: $? = 0 configure:2541: test -s conftest.o configure:2544: $? = 0 configure:2562: result: none needed configure:2580: gcc -c -g -O2 conftest.c >&5 conftest.c:2: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'me' configure:2586: $? = 1 configure: failed program was: | #ifndef __cplusplus | choke me | #endif configure:2730: checking for style of include used by make configure:2758: result: GNU configure:2786: checking dependency style of gcc configure:2876: result: gcc3 configure:2893: checking whether make sets $(MAKE) configure:2913: result: yes configure:2937: checking build system type configure:2955: result: x86_64-unknown-linux-gnu configure:2963: checking host system type configure:2977: result: x86_64-unknown-linux-gnu configure:3000: checking for ViennaRNA package configure:3043: result: headers in "../H" and library... "../lib" configure:3050: checking for exp in -lm configure:3080: gcc -o conftest -g -O2 -I../H -L../lib conftest.c -lm >&5 conftest.c:18: warning: conflicting types for built-in function 'exp' configure:3086: $? = 0 configure:3090: test -z || test ! -s conftest.err configure:3093: $? = 0 configure:3096: test -s conftest configure:3099: $? = 0 configure:3112: result: yes configure:3132: checking how to run the C preprocessor configure:3167: gcc -E -I../H conftest.c configure:3173: $? = 0 configure:3205: gcc -E -I../H conftest.c conftest.c:12:28: error: ac_nonexistent.h: No such file or directory configure:3211: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Kinfold" | #define PACKAGE_TARNAME "kinfold" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "Kinfold 1.0" | #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at" | #define PACKAGE "kinfold" | #define VERSION "1.0" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include configure:3250: result: gcc -E configure:3274: gcc -E -I../H conftest.c configure:3280: $? = 0 configure:3312: gcc -E -I../H conftest.c conftest.c:12:28: error: ac_nonexistent.h: No such file or directory configure:3318: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Kinfold" | #define PACKAGE_TARNAME "kinfold" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "Kinfold 1.0" | #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at" | #define PACKAGE "kinfold" | #define VERSION "1.0" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include configure:3362: checking for egrep configure:3372: result: grep -E configure:3377: checking for ANSI C header files configure:3402: gcc -c -g -O2 -I../H conftest.c >&5 configure:3408: $? = 0 configure:3412: test -z || test ! -s conftest.err configure:3415: $? = 0 configure:3418: test -s conftest.o configure:3421: $? = 0 configure:3510: gcc -o conftest -g -O2 -I../H -L../lib conftest.c -lRNA -lm >&5 conftest.c: In function 'main': conftest.c:29: warning: incompatible implicit declaration of built-in function 'exit' /usr/bin/ld: cannot find -lRNA collect2: ld returned 1 exit status configure:3513: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Kinfold" | #define PACKAGE_TARNAME "kinfold" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "Kinfold 1.0" | #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at" | #define PACKAGE "kinfold" | #define VERSION "1.0" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | #if ((' ' & 0x0FF) == 0x020) | # define ISLOWER(c) ('a' <= (c) && (c) <= 'z') | # define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) | #else | # define ISLOWER(c) (('a' <= (c) && (c) <= 'i') || ('j' <= (c) && (c) <= 'r') || ('s' <= (c) && (c) <= 'z')) | # define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c)) | #endif | | #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) | int | main () | { | int i; | for (i = 0; i < 256; i++) | if (XOR (islower (i), ISLOWER (i)) | || toupper (i) != TOUPPER (i)) | exit(2); | exit (0); | } configure:3533: result: no configure:3557: checking for sys/types.h configure:3573: gcc -c -g -O2 -I../H conftest.c >&5 configure:3579: $? = 0 configure:3583: test -z || test ! -s conftest.err configure:3586: $? = 0 configure:3589: test -s conftest.o configure:3592: $? = 0 configure:3603: result: yes configure:3557: checking for sys/stat.h configure:3573: gcc -c -g -O2 -I../H conftest.c >&5 configure:3579: $? = 0 configure:3583: test -z || test ! -s conftest.err configure:3586: $? = 0 configure:3589: test -s conftest.o configure:3592: $? = 0 configure:3603: result: yes configure:3557: checking for stdlib.h configure:3573: gcc -c -g -O2 -I../H conftest.c >&5 configure:3579: $? = 0 configure:3583: test -z || test ! -s conftest.err configure:3586: $? = 0 configure:3589: test -s conftest.o configure:3592: $? = 0 configure:3603: result: yes configure:3557: checking for string.h configure:3573: gcc -c -g -O2 -I../H conftest.c >&5 configure:3579: $? = 0 configure:3583: test -z || test ! -s conftest.err configure:3586: $? = 0 configure:3589: test -s conftest.o configure:3592: $? = 0 configure:3603: result: yes configure:3557: checking for memory.h configure:3573: gcc -c -g -O2 -I../H conftest.c >&5 configure:3579: $? = 0 configure:3583: test -z || test ! -s conftest.err configure:3586: $? = 0 configure:3589: test -s conftest.o configure:3592: $? = 0 configure:3603: result: yes configure:3557: checking for strings.h configure:3573: gcc -c -g -O2 -I../H conftest.c >&5 configure:3579: $? = 0 configure:3583: test -z || test ! -s conftest.err configure:3586: $? = 0 configure:3589: test -s conftest.o configure:3592: $? = 0 configure:3603: result: yes configure:3557: checking for inttypes.h configure:3573: gcc -c -g -O2 -I../H conftest.c >&5 configure:3579: $? = 0 configure:3583: test -z || test ! -s conftest.err configure:3586: $? = 0 configure:3589: test -s conftest.o configure:3592: $? = 0 configure:3603: result: yes configure:3557: checking for stdint.h configure:3573: gcc -c -g -O2 -I../H conftest.c >&5 configure:3579: $? = 0 configure:3583: test -z || test ! -s conftest.err configure:3586: $? = 0 configure:3589: test -s conftest.o configure:3592: $? = 0 configure:3603: result: yes configure:3557: checking for unistd.h configure:3573: gcc -c -g -O2 -I../H conftest.c >&5 configure:3579: $? = 0 configure:3583: test -z || test ! -s conftest.err configure:3586: $? = 0 configure:3589: test -s conftest.o configure:3592: $? = 0 configure:3603: result: yes configure:3632: checking limits.h usability configure:3644: gcc -c -g -O2 -I../H conftest.c >&5 configure:3650: $? = 0 configure:3654: test -z || test ! -s conftest.err configure:3657: $? = 0 configure:3660: test -s conftest.o configure:3663: $? = 0 configure:3673: result: yes configure:3677: checking limits.h presence configure:3687: gcc -E -I../H conftest.c configure:3693: $? = 0 configure:3713: result: yes configure:3748: checking for limits.h configure:3755: result: yes configure:3632: checking sys/time.h usability configure:3644: gcc -c -g -O2 -I../H conftest.c >&5 configure:3650: $? = 0 configure:3654: test -z || test ! -s conftest.err configure:3657: $? = 0 configure:3660: test -s conftest.o configure:3663: $? = 0 configure:3673: result: yes configure:3677: checking sys/time.h presence configure:3687: gcc -E -I../H conftest.c configure:3693: $? = 0 configure:3713: result: yes configure:3748: checking for sys/time.h configure:3755: result: yes configure:3623: checking for unistd.h configure:3628: result: yes configure:3632: checking fold.h usability configure:3644: gcc -c -g -O2 -I../H conftest.c >&5 configure:3650: $? = 0 configure:3654: test -z || test ! -s conftest.err configure:3657: $? = 0 configure:3660: test -s conftest.o configure:3663: $? = 0 configure:3673: result: yes configure:3677: checking fold.h presence configure:3687: gcc -E -I../H conftest.c configure:3693: $? = 0 configure:3713: result: yes configure:3748: checking for fold.h configure:3755: result: yes configure:3769: checking for an ANSI C-conforming const configure:3836: gcc -c -g -O2 -I../H conftest.c >&5 configure:3842: $? = 0 configure:3846: test -z || test ! -s conftest.err configure:3849: $? = 0 configure:3852: test -s conftest.o configure:3855: $? = 0 configure:3866: result: yes configure:3881: checking for strdup configure:3938: gcc -o conftest -g -O2 -I../H -L../lib conftest.c -lRNA -lm >&5 conftest.c:49: warning: conflicting types for built-in function 'strdup' /usr/bin/ld: cannot find -lRNA collect2: ld returned 1 exit status configure:3944: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Kinfold" | #define PACKAGE_TARNAME "kinfold" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "Kinfold 1.0" | #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at" | #define PACKAGE "kinfold" | #define VERSION "1.0" | #define HAVE_LIBM 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FOLD_H 1 | /* end confdefs.h. */ | /* Define strdup to an innocuous variant, in case declares strdup. | For example, HP-UX 11i declares gettimeofday. */ | #define strdup innocuous_strdup | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char strdup (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef strdup | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | { | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char strdup (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined (__stub_strdup) || defined (__stub___strdup) | choke me | #else | char (*f) () = strdup; | #endif | #ifdef __cplusplus | } | #endif | | int | main () | { | return f != strdup; | ; | return 0; | } configure:3969: result: no configure:4090: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by Kinfold config.status 1.0, which was generated by GNU Autoconf 2.59. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on xhost09.bcgsc.ca config.status:699: creating Makefile config.status:699: creating Example/Makefile config.status:803: creating config.h config.status:1097: executing depfiles commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_build_alias=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_exeext= ac_cv_func_strdup=no ac_cv_header_fold_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_limits_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=no ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_host_alias=x86_64-unknown-linux-gnu ac_cv_lib_m_exp=yes ac_cv_objext=o ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_prog_egrep='grep -E' ac_cv_prog_make_make_set=yes am_cv_CC_dependencies_compiler_type=gcc3 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/missing --run aclocal-1.9' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/missing --run tar' AUTOCONF='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/missing --run autoconf' AUTOHEADER='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/missing --run autoheader' AUTOMAKE='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/missing --run automake-1.9' AWK='gawk' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2' CPP='gcc -E' CPPFLAGS=' -I../H' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='grep -E' EXEEXT='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s' ISODATE='2011-06-24' LDFLAGS='-L../lib ' LIBOBJS='' LIBS='-lRNA -lm ' LTLIBOBJS='' MAKEINFO='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.6.1/missing --run makeinfo' OBJEXT='o' PACKAGE='kinfold' PACKAGE_BUGREPORT='rna@tbi.univie.ac.at' PACKAGE_NAME='Kinfold' PACKAGE_STRING='Kinfold 1.0' PACKAGE_TARNAME='kinfold' PACKAGE_VERSION='1.0' PATH_SEPARATOR=':' SET_MAKE='' SHELL='/bin/sh' STRIP='' VERSION='1.0' ac_ct_CC='gcc' ac_ct_STRIP='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__include='include' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${prefix}/share' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' includedir='${prefix}/include' infodir='${prefix}/info' install_sh='/projects/remc_bigdata/miR/ViennaRNA-1.6.1/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localstatedir='${prefix}/var' mandir='${prefix}/man' mkdir_p='mkdir -p --' oldincludedir='/usr/include' prefix='/projects/remc_bigdata/miR/vRNA-1.6.1' program_transform_name='s,x,x,' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define HAVE_FOLD_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_LIBM 1 #define HAVE_LIMITS_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STDINT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRINGS_H 1 #define HAVE_STRING_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_UNISTD_H 1 #define HAVE_UNISTD_H 1 #define PACKAGE "kinfold" #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at" #define PACKAGE_NAME "Kinfold" #define PACKAGE_STRING "Kinfold 1.0" #define PACKAGE_TARNAME "kinfold" #define PACKAGE_VERSION "1.0" #define VERSION "1.0" configure: exit 0