Info:     * Output directory     : External/126/YY1_Rep1/FP4.0.15/
Info:     * Naming files as      : s_4_lanes_FDR_mc
Info:     * MC Iterations        : 5
Info:     * Chr name prepend     : chr
Info:     * Min. reported pk ht  : 0
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Eff. fraction        : 0.9
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : sam-filter
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * One file per chr.    : On
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : Off
Info:     * Wig File Headers     : On
Info:     * Min readahead window : Off
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : On
Info:     * Filter quality min.  : On (1)
Info:     * Input Files          : 
Info:          s_4_sequence.fastq.sorted.sam
Version: Initializing class PeakWriter                        $Revision: 2532 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 2723 $
Version: Initializing class SAMIterator                       $Revision: 2770 $
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 2768 $
Version: Initializing class PeakStore                         $Revision: 2739 $
Version: Initializing class MapStore                          $Revision: 2738 $
Info:    Current chromosome : 1
Info:    Reads used: 1055085
Info:    Reads filtered by duplicate: 40381
Info:    Reads filtered by iterator: 325893
Version: Initializing class PeakStats                         $Revision: 2532 $
Version: Initializing class Histogram                         $Revision: 2530 $
Version: Initializing class MC_Simulation                     $Revision: 2561 $
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 1 Statistics
Info:    Estimated Chromosome Size :  247,198,634
Info:    Using Effective chr size of 0.9 * estimated size : 222,478,768
Info:    Observed Coverage         : 135,719,807
Info:    Generating random reads in batches of : 135,719
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Version: Initializing class RandomAlignedReadGenerator        $Revision: 2530 $
Info:    Reads used: 135697
Info:    Reads filtered by duplicate: 22
Info:    Reads used: 271366
Info:    Reads filtered by duplicate: 72
Info:    Reads used: 406979
Info:    Reads filtered by duplicate: 178
Info:    Reads used: 542543
Info:    Reads filtered by duplicate: 333
Info:    Reads used: 678077
Info:    Reads filtered by duplicate: 518
Info:    Reads used: 813577
Info:    Reads filtered by duplicate: 737
Info:    2
Info:    Reads used: 135693
Info:    Reads filtered by duplicate: 26
Info:    Reads used: 271356
Info:    Reads filtered by duplicate: 82
Info:    Reads used: 406972
Info:    Reads filtered by duplicate: 185
Info:    Reads used: 542562
Info:    Reads filtered by duplicate: 314
Info:    Reads used: 678087
Info:    Reads filtered by duplicate: 508
Info:    Reads used: 813564
Info:    Reads filtered by duplicate: 750
Info:    3
Info:    Reads used: 135700
Info:    Reads filtered by duplicate: 19
Info:    Reads used: 271369
Info:    Reads filtered by duplicate: 69
Info:    Reads used: 407010
Info:    Reads filtered by duplicate: 147
Info:    Reads used: 542594
Info:    Reads filtered by duplicate: 282
Info:    Reads used: 678102
Info:    Reads filtered by duplicate: 493
Info:    Reads used: 813614
Info:    Reads filtered by duplicate: 700
Info:    4
Info:    Reads used: 135694
Info:    Reads filtered by duplicate: 25
Info:    Reads used: 271372
Info:    Reads filtered by duplicate: 66
Info:    Reads used: 406968
Info:    Reads filtered by duplicate: 189
Info:    Reads used: 542559
Info:    Reads filtered by duplicate: 317
Info:    Reads used: 678096
Info:    Reads filtered by duplicate: 499
Info:    Reads used: 813576
Info:    Reads filtered by duplicate: 738
Info:    5
Info:    Reads used: 135698
Info:    Reads filtered by duplicate: 21
Info:    Reads used: 271345
Info:    Reads filtered by duplicate: 93
Info:    Reads used: 406939
Info:    Reads filtered by duplicate: 218
Info:    Reads used: 542510
Info:    Reads filtered by duplicate: 366
Info:    Reads used: 678069
Info:    Reads filtered by duplicate: 526
Info:    Reads used: 813548
Info:    Reads filtered by duplicate: 766
Version: Initializing class FileOut                           $Revision: 2530 $
Version: Initializing class WigwriterBuffered                 $Revision: 2530 $
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 10
Info:    Reads used: 603099
Info:    Reads filtered by duplicate: 53406
Info:    Reads filtered by iterator: 667497
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 10 Statistics
Info:    Estimated Chromosome Size :  135,374,718
Info:    Using Effective chr size of 0.9 * estimated size : 121,837,248
Info:    Observed Coverage         : 78,803,986
Info:    Generating random reads in batches of : 78,803
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 78788
Info:    Reads filtered by duplicate: 15
Info:    Reads used: 157556
Info:    Reads filtered by duplicate: 50
Info:    Reads used: 236285
Info:    Reads filtered by duplicate: 124
Info:    Reads used: 314999
Info:    Reads filtered by duplicate: 213
Info:    Reads used: 393680
Info:    Reads filtered by duplicate: 335
Info:    Reads used: 472348
Info:    Reads filtered by duplicate: 470
Info:    2
Info:    Reads used: 78786
Info:    Reads filtered by duplicate: 17
Info:    Reads used: 157554
Info:    Reads filtered by duplicate: 52
Info:    Reads used: 236299
Info:    Reads filtered by duplicate: 110
Info:    Reads used: 315017
Info:    Reads filtered by duplicate: 195
Info:    Reads used: 393710
Info:    Reads filtered by duplicate: 305
Info:    Reads used: 472385
Info:    Reads filtered by duplicate: 433
Info:    3
Info:    Reads used: 78790
Info:    Reads filtered by duplicate: 13
Info:    Reads used: 157550
Info:    Reads filtered by duplicate: 56
Info:    Reads used: 236291
Info:    Reads filtered by duplicate: 118
Info:    Reads used: 315007
Info:    Reads filtered by duplicate: 205
Info:    Reads used: 393710
Info:    Reads filtered by duplicate: 305
Info:    Reads used: 472383
Info:    Reads filtered by duplicate: 435
Info:    4
Info:    Reads used: 78793
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 157556
Info:    Reads filtered by duplicate: 50
Info:    Reads used: 236303
Info:    Reads filtered by duplicate: 106
Info:    Reads used: 315011
Info:    Reads filtered by duplicate: 201
Info:    Reads used: 393715
Info:    Reads filtered by duplicate: 300
Info:    Reads used: 472375
Info:    Reads filtered by duplicate: 443
Info:    5
Info:    Reads used: 78785
Info:    Reads filtered by duplicate: 18
Info:    Reads used: 157556
Info:    Reads filtered by duplicate: 50
Info:    Reads used: 236300
Info:    Reads filtered by duplicate: 109
Info:    Reads used: 315015
Info:    Reads filtered by duplicate: 197
Info:    Reads used: 393699
Info:    Reads filtered by duplicate: 316
Info:    Reads used: 472368
Info:    Reads filtered by duplicate: 450
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_10.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 11
Info:    Reads used: 615915
Info:    Reads filtered by duplicate: 17667
Info:    Reads filtered by iterator: 815116
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 11 Statistics
Info:    Estimated Chromosome Size :  134,452,146
Info:    Using Effective chr size of 0.9 * estimated size : 121,006,928
Info:    Observed Coverage         : 79,204,308
Info:    Generating random reads in batches of : 79,204
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 79194
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 158345
Info:    Reads filtered by duplicate: 63
Info:    Reads used: 237495
Info:    Reads filtered by duplicate: 117
Info:    Reads used: 316598
Info:    Reads filtered by duplicate: 218
Info:    Reads used: 395687
Info:    Reads filtered by duplicate: 333
Info:    Reads used: 474739
Info:    Reads filtered by duplicate: 485
Info:    2
Info:    Reads used: 79192
Info:    Reads filtered by duplicate: 12
Info:    Reads used: 158366
Info:    Reads filtered by duplicate: 42
Info:    Reads used: 237523
Info:    Reads filtered by duplicate: 89
Info:    Reads used: 316637
Info:    Reads filtered by duplicate: 179
Info:    Reads used: 395756
Info:    Reads filtered by duplicate: 264
Info:    Reads used: 474813
Info:    Reads filtered by duplicate: 411
Info:    3
Info:    Reads used: 79189
Info:    Reads filtered by duplicate: 15
Info:    Reads used: 158358
Info:    Reads filtered by duplicate: 50
Info:    Reads used: 237491
Info:    Reads filtered by duplicate: 121
Info:    Reads used: 316587
Info:    Reads filtered by duplicate: 229
Info:    Reads used: 395666
Info:    Reads filtered by duplicate: 354
Info:    Reads used: 474718
Info:    Reads filtered by duplicate: 506
Info:    4
Info:    Reads used: 79190
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 158350
Info:    Reads filtered by duplicate: 58
Info:    Reads used: 237496
Info:    Reads filtered by duplicate: 116
Info:    Reads used: 316591
Info:    Reads filtered by duplicate: 225
Info:    Reads used: 395672
Info:    Reads filtered by duplicate: 348
Info:    Reads used: 474730
Info:    Reads filtered by duplicate: 494
Info:    5
Info:    Reads used: 79181
Info:    Reads filtered by duplicate: 23
Info:    Reads used: 158345
Info:    Reads filtered by duplicate: 63
Info:    Reads used: 237484
Info:    Reads filtered by duplicate: 128
Info:    Reads used: 316602
Info:    Reads filtered by duplicate: 214
Info:    Reads used: 395701
Info:    Reads filtered by duplicate: 319
Info:    Reads used: 474749
Info:    Reads filtered by duplicate: 475
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_11.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 12
Info:    Reads used: 561904
Info:    Reads filtered by duplicate: 13725
Info:    Reads filtered by iterator: 960727
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 12 Statistics
Info:    Estimated Chromosome Size :  132,289,634
Info:    Using Effective chr size of 0.9 * estimated size : 119,060,664
Info:    Observed Coverage         : 76,745,411
Info:    Generating random reads in batches of : 76,745
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 76735
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 153441
Info:    Reads filtered by duplicate: 49
Info:    Reads used: 230135
Info:    Reads filtered by duplicate: 100
Info:    Reads used: 306798
Info:    Reads filtered by duplicate: 182
Info:    Reads used: 383441
Info:    Reads filtered by duplicate: 284
Info:    Reads used: 460036
Info:    Reads filtered by duplicate: 434
Info:    2
Info:    Reads used: 76729
Info:    Reads filtered by duplicate: 16
Info:    Reads used: 153438
Info:    Reads filtered by duplicate: 52
Info:    Reads used: 230119
Info:    Reads filtered by duplicate: 116
Info:    Reads used: 306790
Info:    Reads filtered by duplicate: 190
Info:    Reads used: 383411
Info:    Reads filtered by duplicate: 314
Info:    Reads used: 460000
Info:    Reads filtered by duplicate: 470
Info:    3
Info:    Reads used: 76735
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 153438
Info:    Reads filtered by duplicate: 52
Info:    Reads used: 230129
Info:    Reads filtered by duplicate: 106
Info:    Reads used: 306783
Info:    Reads filtered by duplicate: 197
Info:    Reads used: 383413
Info:    Reads filtered by duplicate: 312
Info:    Reads used: 460026
Info:    Reads filtered by duplicate: 444
Info:    4
Info:    Reads used: 76739
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 153441
Info:    Reads filtered by duplicate: 49
Info:    Reads used: 230124
Info:    Reads filtered by duplicate: 111
Info:    Reads used: 306786
Info:    Reads filtered by duplicate: 194
Info:    Reads used: 383422
Info:    Reads filtered by duplicate: 303
Info:    Reads used: 460037
Info:    Reads filtered by duplicate: 433
Info:    5
Info:    Reads used: 76734
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 153435
Info:    Reads filtered by duplicate: 55
Info:    Reads used: 230125
Info:    Reads filtered by duplicate: 110
Info:    Reads used: 306789
Info:    Reads filtered by duplicate: 191
Info:    Reads used: 383415
Info:    Reads filtered by duplicate: 310
Info:    Reads used: 459993
Info:    Reads filtered by duplicate: 477
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_12.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 13
Info:    Reads used: 327294
Info:    Reads filtered by duplicate: 6684
Info:    Reads filtered by iterator: 1038881
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 13 Statistics
Info:    Estimated Chromosome Size :  114,127,846
Info:    Using Effective chr size of 0.9 * estimated size : 102,715,064
Info:    Observed Coverage         : 49,855,850
Info:    Generating random reads in batches of : 49,855
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 49850
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 99679
Info:    Reads filtered by duplicate: 31
Info:    Reads used: 149505
Info:    Reads filtered by duplicate: 60
Info:    Reads used: 199315
Info:    Reads filtered by duplicate: 105
Info:    Reads used: 249120
Info:    Reads filtered by duplicate: 155
Info:    2
Info:    Reads used: 49851
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 99688
Info:    Reads filtered by duplicate: 22
Info:    Reads used: 149511
Info:    Reads filtered by duplicate: 54
Info:    Reads used: 199324
Info:    Reads filtered by duplicate: 96
Info:    Reads used: 249125
Info:    Reads filtered by duplicate: 150
Info:    3
Info:    Reads used: 49848
Info:    Reads filtered by duplicate: 7
Info:    Reads used: 99683
Info:    Reads filtered by duplicate: 27
Info:    Reads used: 149514
Info:    Reads filtered by duplicate: 51
Info:    Reads used: 199326
Info:    Reads filtered by duplicate: 94
Info:    Reads used: 249125
Info:    Reads filtered by duplicate: 150
Info:    4
Info:    Reads used: 49847
Info:    Reads filtered by duplicate: 8
Info:    Reads used: 99683
Info:    Reads filtered by duplicate: 27
Info:    Reads used: 149506
Info:    Reads filtered by duplicate: 59
Info:    Reads used: 199322
Info:    Reads filtered by duplicate: 98
Info:    Reads used: 249115
Info:    Reads filtered by duplicate: 160
Info:    5
Info:    Reads used: 49851
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 99686
Info:    Reads filtered by duplicate: 24
Info:    Reads used: 149512
Info:    Reads filtered by duplicate: 53
Info:    Reads used: 199322
Info:    Reads filtered by duplicate: 98
Info:    Reads used: 249125
Info:    Reads filtered by duplicate: 150
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_13.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 14
Info:    Reads used: 378195
Info:    Reads filtered by duplicate: 9209
Info:    Reads filtered by iterator: 1136124
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 14 Statistics
Info:    Estimated Chromosome Size :  106,360,591
Info:    Using Effective chr size of 0.9 * estimated size : 95,724,528
Info:    Observed Coverage         : 51,524,688
Info:    Generating random reads in batches of : 51,524
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 51521
Info:    Reads filtered by duplicate: 3
Info:    Reads used: 103031
Info:    Reads filtered by duplicate: 17
Info:    Reads used: 154526
Info:    Reads filtered by duplicate: 46
Info:    Reads used: 206007
Info:    Reads filtered by duplicate: 89
Info:    Reads used: 257473
Info:    Reads filtered by duplicate: 147
Info:    2
Info:    Reads used: 51518
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 103015
Info:    Reads filtered by duplicate: 33
Info:    Reads used: 154496
Info:    Reads filtered by duplicate: 76
Info:    Reads used: 205983
Info:    Reads filtered by duplicate: 113
Info:    Reads used: 257440
Info:    Reads filtered by duplicate: 180
Info:    3
Info:    Reads used: 51520
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 103021
Info:    Reads filtered by duplicate: 27
Info:    Reads used: 154513
Info:    Reads filtered by duplicate: 59
Info:    Reads used: 205990
Info:    Reads filtered by duplicate: 106
Info:    Reads used: 257457
Info:    Reads filtered by duplicate: 163
Info:    4
Info:    Reads used: 51520
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 103021
Info:    Reads filtered by duplicate: 27
Info:    Reads used: 154520
Info:    Reads filtered by duplicate: 52
Info:    Reads used: 205999
Info:    Reads filtered by duplicate: 97
Info:    Reads used: 257472
Info:    Reads filtered by duplicate: 148
Info:    5
Info:    Reads used: 51518
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 103024
Info:    Reads filtered by duplicate: 24
Info:    Reads used: 154515
Info:    Reads filtered by duplicate: 57
Info:    Reads used: 205996
Info:    Reads filtered by duplicate: 100
Info:    Reads used: 257439
Info:    Reads filtered by duplicate: 181
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_14.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 15
Info:    Reads used: 377402
Info:    Reads filtered by duplicate: 8478
Info:    Reads filtered by iterator: 1249347
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 15 Statistics
Info:    Estimated Chromosome Size :  100,338,688
Info:    Using Effective chr size of 0.9 * estimated size : 90,304,816
Info:    Observed Coverage         : 49,619,977
Info:    Generating random reads in batches of : 49,619
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 49613
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 99205
Info:    Reads filtered by duplicate: 33
Info:    Reads used: 148796
Info:    Reads filtered by duplicate: 61
Info:    Reads used: 198365
Info:    Reads filtered by duplicate: 111
Info:    Reads used: 247908
Info:    Reads filtered by duplicate: 187
Info:    2
Info:    Reads used: 49613
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 99212
Info:    Reads filtered by duplicate: 26
Info:    Reads used: 148793
Info:    Reads filtered by duplicate: 64
Info:    Reads used: 198369
Info:    Reads filtered by duplicate: 107
Info:    Reads used: 247924
Info:    Reads filtered by duplicate: 171
Info:    3
Info:    Reads used: 49615
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 99212
Info:    Reads filtered by duplicate: 26
Info:    Reads used: 148786
Info:    Reads filtered by duplicate: 71
Info:    Reads used: 198350
Info:    Reads filtered by duplicate: 126
Info:    Reads used: 247913
Info:    Reads filtered by duplicate: 182
Info:    4
Info:    Reads used: 49610
Info:    Reads filtered by duplicate: 9
Info:    Reads used: 99205
Info:    Reads filtered by duplicate: 33
Info:    Reads used: 148792
Info:    Reads filtered by duplicate: 65
Info:    Reads used: 198361
Info:    Reads filtered by duplicate: 115
Info:    Reads used: 247923
Info:    Reads filtered by duplicate: 172
Info:    5
Info:    Reads used: 49616
Info:    Reads filtered by duplicate: 3
Info:    Reads used: 99213
Info:    Reads filtered by duplicate: 25
Info:    Reads used: 148802
Info:    Reads filtered by duplicate: 55
Info:    Reads used: 198368
Info:    Reads filtered by duplicate: 108
Info:    Reads used: 247937
Info:    Reads filtered by duplicate: 158
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_15.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 16
Info:    Reads used: 462756
Info:    Reads filtered by duplicate: 21940
Info:    Reads filtered by iterator: 1465612
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 16 Statistics
Info:    Estimated Chromosome Size :   88,819,494
Info:    Using Effective chr size of 0.9 * estimated size : 79,937,544
Info:    Observed Coverage         : 52,808,604
Info:    Generating random reads in batches of : 52,808
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 52797
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 105583
Info:    Reads filtered by duplicate: 33
Info:    Reads used: 158341
Info:    Reads filtered by duplicate: 83
Info:    Reads used: 211089
Info:    Reads filtered by duplicate: 143
Info:    Reads used: 263821
Info:    Reads filtered by duplicate: 219
Info:    Reads used: 316540
Info:    Reads filtered by duplicate: 308
Info:    2
Info:    Reads used: 52800
Info:    Reads filtered by duplicate: 8
Info:    Reads used: 105571
Info:    Reads filtered by duplicate: 45
Info:    Reads used: 158342
Info:    Reads filtered by duplicate: 82
Info:    Reads used: 211098
Info:    Reads filtered by duplicate: 134
Info:    Reads used: 263848
Info:    Reads filtered by duplicate: 192
Info:    Reads used: 316544
Info:    Reads filtered by duplicate: 304
Info:    3
Info:    Reads used: 52800
Info:    Reads filtered by duplicate: 8
Info:    Reads used: 105587
Info:    Reads filtered by duplicate: 29
Info:    Reads used: 158351
Info:    Reads filtered by duplicate: 73
Info:    Reads used: 211092
Info:    Reads filtered by duplicate: 140
Info:    Reads used: 263824
Info:    Reads filtered by duplicate: 216
Info:    Reads used: 316535
Info:    Reads filtered by duplicate: 313
Info:    4
Info:    Reads used: 52798
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 105579
Info:    Reads filtered by duplicate: 37
Info:    Reads used: 158336
Info:    Reads filtered by duplicate: 88
Info:    Reads used: 211082
Info:    Reads filtered by duplicate: 150
Info:    Reads used: 263825
Info:    Reads filtered by duplicate: 215
Info:    Reads used: 316528
Info:    Reads filtered by duplicate: 320
Info:    5
Info:    Reads used: 52799
Info:    Reads filtered by duplicate: 9
Info:    Reads used: 105580
Info:    Reads filtered by duplicate: 36
Info:    Reads used: 158343
Info:    Reads filtered by duplicate: 81
Info:    Reads used: 211072
Info:    Reads filtered by duplicate: 160
Info:    Reads used: 263803
Info:    Reads filtered by duplicate: 237
Info:    Reads used: 316506
Info:    Reads filtered by duplicate: 342
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_16.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 17
Info:    Reads used: 475650
Info:    Reads filtered by duplicate: 14509
Info:    Reads filtered by iterator: 1609985
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 17 Statistics
Info:    Estimated Chromosome Size :   78,655,003
Info:    Using Effective chr size of 0.9 * estimated size : 70,789,496
Info:    Observed Coverage         : 53,294,817
Info:    Generating random reads in batches of : 53,294
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 53284
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 106542
Info:    Reads filtered by duplicate: 46
Info:    Reads used: 159789
Info:    Reads filtered by duplicate: 93
Info:    Reads used: 213015
Info:    Reads filtered by duplicate: 161
Info:    Reads used: 266203
Info:    Reads filtered by duplicate: 267
Info:    Reads used: 319386
Info:    Reads filtered by duplicate: 378
Info:    Reads used: 372545
Info:    Reads filtered by duplicate: 513
Info:    2
Info:    Reads used: 53280
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 106552
Info:    Reads filtered by duplicate: 36
Info:    Reads used: 159801
Info:    Reads filtered by duplicate: 81
Info:    Reads used: 213014
Info:    Reads filtered by duplicate: 162
Info:    Reads used: 266211
Info:    Reads filtered by duplicate: 259
Info:    Reads used: 319400
Info:    Reads filtered by duplicate: 364
Info:    Reads used: 372563
Info:    Reads filtered by duplicate: 495
Info:    3
Info:    Reads used: 53287
Info:    Reads filtered by duplicate: 7
Info:    Reads used: 106556
Info:    Reads filtered by duplicate: 32
Info:    Reads used: 159801
Info:    Reads filtered by duplicate: 81
Info:    Reads used: 213039
Info:    Reads filtered by duplicate: 137
Info:    Reads used: 266237
Info:    Reads filtered by duplicate: 233
Info:    Reads used: 319432
Info:    Reads filtered by duplicate: 332
Info:    Reads used: 372619
Info:    Reads filtered by duplicate: 439
Info:    4
Info:    Reads used: 53286
Info:    Reads filtered by duplicate: 8
Info:    Reads used: 106529
Info:    Reads filtered by duplicate: 59
Info:    Reads used: 159774
Info:    Reads filtered by duplicate: 108
Info:    Reads used: 212979
Info:    Reads filtered by duplicate: 197
Info:    Reads used: 266181
Info:    Reads filtered by duplicate: 289
Info:    Reads used: 319373
Info:    Reads filtered by duplicate: 391
Info:    Reads used: 372533
Info:    Reads filtered by duplicate: 525
Info:    5
Info:    Reads used: 53286
Info:    Reads filtered by duplicate: 8
Info:    Reads used: 106549
Info:    Reads filtered by duplicate: 39
Info:    Reads used: 159788
Info:    Reads filtered by duplicate: 94
Info:    Reads used: 212996
Info:    Reads filtered by duplicate: 180
Info:    Reads used: 266197
Info:    Reads filtered by duplicate: 273
Info:    Reads used: 319371
Info:    Reads filtered by duplicate: 393
Info:    Reads used: 372544
Info:    Reads filtered by duplicate: 514
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_17.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 18
Info:    Reads used: 293006
Info:    Reads filtered by duplicate: 14794
Info:    Reads filtered by iterator: 1694336
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 18 Statistics
Info:    Estimated Chromosome Size :   76,117,071
Info:    Using Effective chr size of 0.9 * estimated size : 68,505,360
Info:    Observed Coverage         : 42,362,061
Info:    Generating random reads in batches of : 42,362
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 42355
Info:    Reads filtered by duplicate: 7
Info:    Reads used: 84691
Info:    Reads filtered by duplicate: 33
Info:    Reads used: 127028
Info:    Reads filtered by duplicate: 58
Info:    Reads used: 169351
Info:    Reads filtered by duplicate: 97
Info:    Reads used: 211657
Info:    Reads filtered by duplicate: 153
Info:    Reads used: 253952
Info:    Reads filtered by duplicate: 220
Info:    2
Info:    Reads used: 42358
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 84691
Info:    Reads filtered by duplicate: 33
Info:    Reads used: 127022
Info:    Reads filtered by duplicate: 64
Info:    Reads used: 169324
Info:    Reads filtered by duplicate: 124
Info:    Reads used: 211625
Info:    Reads filtered by duplicate: 185
Info:    Reads used: 253921
Info:    Reads filtered by duplicate: 251
Info:    3
Info:    Reads used: 42357
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 84695
Info:    Reads filtered by duplicate: 29
Info:    Reads used: 127016
Info:    Reads filtered by duplicate: 70
Info:    Reads used: 169330
Info:    Reads filtered by duplicate: 118
Info:    Reads used: 211627
Info:    Reads filtered by duplicate: 183
Info:    Reads used: 253912
Info:    Reads filtered by duplicate: 260
Info:    4
Info:    Reads used: 42356
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 84705
Info:    Reads filtered by duplicate: 19
Info:    Reads used: 127039
Info:    Reads filtered by duplicate: 47
Info:    Reads used: 169348
Info:    Reads filtered by duplicate: 100
Info:    Reads used: 211653
Info:    Reads filtered by duplicate: 157
Info:    Reads used: 253954
Info:    Reads filtered by duplicate: 218
Info:    5
Info:    Reads used: 42352
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 84696
Info:    Reads filtered by duplicate: 28
Info:    Reads used: 127024
Info:    Reads filtered by duplicate: 62
Info:    Reads used: 169348
Info:    Reads filtered by duplicate: 100
Info:    Reads used: 211650
Info:    Reads filtered by duplicate: 160
Info:    Reads used: 253937
Info:    Reads filtered by duplicate: 235
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_18.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 19
Info:    Reads used: 408371
Info:    Reads filtered by duplicate: 19071
Info:    Reads filtered by iterator: 1835682
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 19 Statistics
Info:    Estimated Chromosome Size :   63,798,475
Info:    Using Effective chr size of 0.9 * estimated size : 57,418,628
Info:    Observed Coverage         : 41,410,741
Info:    Generating random reads in batches of : 41,410
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 41408
Info:    Reads filtered by duplicate: 2
Info:    Reads used: 82794
Info:    Reads filtered by duplicate: 26
Info:    Reads used: 124175
Info:    Reads filtered by duplicate: 55
Info:    Reads used: 165539
Info:    Reads filtered by duplicate: 101
Info:    Reads used: 206879
Info:    Reads filtered by duplicate: 171
Info:    Reads used: 248204
Info:    Reads filtered by duplicate: 256
Info:    2
Info:    Reads used: 41401
Info:    Reads filtered by duplicate: 9
Info:    Reads used: 82789
Info:    Reads filtered by duplicate: 31
Info:    Reads used: 124169
Info:    Reads filtered by duplicate: 61
Info:    Reads used: 165524
Info:    Reads filtered by duplicate: 116
Info:    Reads used: 206869
Info:    Reads filtered by duplicate: 181
Info:    Reads used: 248194
Info:    Reads filtered by duplicate: 266
Info:    3
Info:    Reads used: 41406
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 82798
Info:    Reads filtered by duplicate: 22
Info:    Reads used: 124170
Info:    Reads filtered by duplicate: 60
Info:    Reads used: 165525
Info:    Reads filtered by duplicate: 115
Info:    Reads used: 206869
Info:    Reads filtered by duplicate: 181
Info:    Reads used: 248185
Info:    Reads filtered by duplicate: 275
Info:    4
Info:    Reads used: 41405
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 82786
Info:    Reads filtered by duplicate: 34
Info:    Reads used: 124151
Info:    Reads filtered by duplicate: 79
Info:    Reads used: 165515
Info:    Reads filtered by duplicate: 125
Info:    Reads used: 206846
Info:    Reads filtered by duplicate: 204
Info:    Reads used: 248175
Info:    Reads filtered by duplicate: 285
Info:    5
Info:    Reads used: 41401
Info:    Reads filtered by duplicate: 9
Info:    Reads used: 82797
Info:    Reads filtered by duplicate: 23
Info:    Reads used: 124164
Info:    Reads filtered by duplicate: 66
Info:    Reads used: 165521
Info:    Reads filtered by duplicate: 119
Info:    Reads used: 206870
Info:    Reads filtered by duplicate: 180
Info:    Reads used: 248188
Info:    Reads filtered by duplicate: 272
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_19.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 2
Info:    Reads used: 961912
Info:    Reads filtered by duplicate: 29990
Info:    Reads filtered by iterator: 2116348
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 2 Statistics
Info:    Estimated Chromosome Size :  242,740,369
Info:    Using Effective chr size of 0.9 * estimated size : 218,466,320
Info:    Observed Coverage         : 134,903,732
Info:    Generating random reads in batches of : 134,903
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 134886
Info:    Reads filtered by duplicate: 17
Info:    Reads used: 269705
Info:    Reads filtered by duplicate: 101
Info:    Reads used: 404515
Info:    Reads filtered by duplicate: 194
Info:    Reads used: 539287
Info:    Reads filtered by duplicate: 325
Info:    Reads used: 674005
Info:    Reads filtered by duplicate: 510
Info:    Reads used: 808672
Info:    Reads filtered by duplicate: 746
Info:    2
Info:    Reads used: 134886
Info:    Reads filtered by duplicate: 17
Info:    Reads used: 269737
Info:    Reads filtered by duplicate: 69
Info:    Reads used: 404549
Info:    Reads filtered by duplicate: 160
Info:    Reads used: 539291
Info:    Reads filtered by duplicate: 321
Info:    Reads used: 674018
Info:    Reads filtered by duplicate: 497
Info:    Reads used: 808705
Info:    Reads filtered by duplicate: 713
Info:    3
Info:    Reads used: 134872
Info:    Reads filtered by duplicate: 31
Info:    Reads used: 269718
Info:    Reads filtered by duplicate: 88
Info:    Reads used: 404515
Info:    Reads filtered by duplicate: 194
Info:    Reads used: 539277
Info:    Reads filtered by duplicate: 335
Info:    Reads used: 674005
Info:    Reads filtered by duplicate: 510
Info:    Reads used: 808681
Info:    Reads filtered by duplicate: 737
Info:    4
Info:    Reads used: 134885
Info:    Reads filtered by duplicate: 18
Info:    Reads used: 269724
Info:    Reads filtered by duplicate: 82
Info:    Reads used: 404520
Info:    Reads filtered by duplicate: 189
Info:    Reads used: 539283
Info:    Reads filtered by duplicate: 329
Info:    Reads used: 674018
Info:    Reads filtered by duplicate: 497
Info:    Reads used: 808676
Info:    Reads filtered by duplicate: 742
Info:    5
Info:    Reads used: 134872
Info:    Reads filtered by duplicate: 31
Info:    Reads used: 269714
Info:    Reads filtered by duplicate: 92
Info:    Reads used: 404524
Info:    Reads filtered by duplicate: 185
Info:    Reads used: 539283
Info:    Reads filtered by duplicate: 329
Info:    Reads used: 673986
Info:    Reads filtered by duplicate: 529
Info:    Reads used: 808639
Info:    Reads filtered by duplicate: 779
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_2.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 20
Info:    Reads used: 355672
Info:    Reads filtered by duplicate: 12837
Info:    Reads filtered by iterator: 2188951
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 20 Statistics
Info:    Estimated Chromosome Size :   62,435,456
Info:    Using Effective chr size of 0.9 * estimated size : 56,191,908
Info:    Observed Coverage         : 41,346,658
Info:    Generating random reads in batches of : 41,346
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 41338
Info:    Reads filtered by duplicate: 8
Info:    Reads used: 82669
Info:    Reads filtered by duplicate: 23
Info:    Reads used: 123972
Info:    Reads filtered by duplicate: 66
Info:    Reads used: 165267
Info:    Reads filtered by duplicate: 117
Info:    Reads used: 206535
Info:    Reads filtered by duplicate: 195
Info:    Reads used: 247788
Info:    Reads filtered by duplicate: 288
Info:    Reads used: 289026
Info:    Reads filtered by duplicate: 396
Info:    2
Info:    Reads used: 41342
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 82664
Info:    Reads filtered by duplicate: 28
Info:    Reads used: 123979
Info:    Reads filtered by duplicate: 59
Info:    Reads used: 165274
Info:    Reads filtered by duplicate: 110
Info:    Reads used: 206548
Info:    Reads filtered by duplicate: 182
Info:    Reads used: 247785
Info:    Reads filtered by duplicate: 291
Info:    Reads used: 289038
Info:    Reads filtered by duplicate: 384
Info:    3
Info:    Reads used: 41338
Info:    Reads filtered by duplicate: 8
Info:    Reads used: 82659
Info:    Reads filtered by duplicate: 33
Info:    Reads used: 123966
Info:    Reads filtered by duplicate: 72
Info:    Reads used: 165264
Info:    Reads filtered by duplicate: 120
Info:    Reads used: 206533
Info:    Reads filtered by duplicate: 197
Info:    Reads used: 247803
Info:    Reads filtered by duplicate: 273
Info:    Reads used: 289032
Info:    Reads filtered by duplicate: 390
Info:    4
Info:    Reads used: 41340
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 82659
Info:    Reads filtered by duplicate: 33
Info:    Reads used: 123962
Info:    Reads filtered by duplicate: 76
Info:    Reads used: 165250
Info:    Reads filtered by duplicate: 134
Info:    Reads used: 206527
Info:    Reads filtered by duplicate: 203
Info:    Reads used: 247801
Info:    Reads filtered by duplicate: 275
Info:    Reads used: 289045
Info:    Reads filtered by duplicate: 377
Info:    5
Info:    Reads used: 41343
Info:    Reads filtered by duplicate: 3
Info:    Reads used: 82669
Info:    Reads filtered by duplicate: 23
Info:    Reads used: 123982
Info:    Reads filtered by duplicate: 56
Info:    Reads used: 165268
Info:    Reads filtered by duplicate: 116
Info:    Reads used: 206544
Info:    Reads filtered by duplicate: 186
Info:    Reads used: 247804
Info:    Reads filtered by duplicate: 272
Info:    Reads used: 289044
Info:    Reads filtered by duplicate: 378
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_20.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 21
Info:    Reads used: 164430
Info:    Reads filtered by duplicate: 8569
Info:    Reads filtered by iterator: 2246811
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 21 Statistics
Info:    Estimated Chromosome Size :   46,944,408
Info:    Using Effective chr size of 0.9 * estimated size : 42,249,968
Info:    Observed Coverage         : 19,986,421
Info:    Generating random reads in batches of : 19,986
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 19984
Info:    Reads filtered by duplicate: 2
Info:    Reads used: 39965
Info:    Reads filtered by duplicate: 7
Info:    Reads used: 59940
Info:    Reads filtered by duplicate: 18
Info:    Reads used: 79909
Info:    Reads filtered by duplicate: 35
Info:    Reads used: 99876
Info:    Reads filtered by duplicate: 54
Info:    2
Info:    Reads used: 19984
Info:    Reads filtered by duplicate: 2
Info:    Reads used: 39961
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 59935
Info:    Reads filtered by duplicate: 23
Info:    Reads used: 79908
Info:    Reads filtered by duplicate: 36
Info:    Reads used: 99874
Info:    Reads filtered by duplicate: 56
Info:    3
Info:    Reads used: 19984
Info:    Reads filtered by duplicate: 2
Info:    Reads used: 39959
Info:    Reads filtered by duplicate: 13
Info:    Reads used: 59929
Info:    Reads filtered by duplicate: 29
Info:    Reads used: 79899
Info:    Reads filtered by duplicate: 45
Info:    Reads used: 99866
Info:    Reads filtered by duplicate: 64
Info:    4
Info:    Reads used: 19984
Info:    Reads filtered by duplicate: 2
Info:    Reads used: 39967
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 59943
Info:    Reads filtered by duplicate: 15
Info:    Reads used: 79903
Info:    Reads filtered by duplicate: 41
Info:    Reads used: 99857
Info:    Reads filtered by duplicate: 73
Info:    5
Info:    Reads used: 19986
Info:    Reads used: 39962
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 59934
Info:    Reads filtered by duplicate: 24
Info:    Reads used: 79906
Info:    Reads filtered by duplicate: 38
Info:    Reads used: 99874
Info:    Reads filtered by duplicate: 56
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_21.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 22
Info:    Reads used: 257465
Info:    Reads filtered by duplicate: 8396
Info:    Reads filtered by iterator: 2322243
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 22 Statistics
Info:    Estimated Chromosome Size :   49,591,666
Info:    Using Effective chr size of 0.9 * estimated size : 44,632,496
Info:    Observed Coverage         : 25,818,006
Info:    Generating random reads in batches of : 25,818
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 25812
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 51609
Info:    Reads filtered by duplicate: 27
Info:    Reads used: 77411
Info:    Reads filtered by duplicate: 43
Info:    Reads used: 103208
Info:    Reads filtered by duplicate: 64
Info:    Reads used: 128982
Info:    Reads filtered by duplicate: 108
Info:    Reads used: 154756
Info:    Reads filtered by duplicate: 152
Info:    2
Info:    Reads used: 25813
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 51621
Info:    Reads filtered by duplicate: 15
Info:    Reads used: 77423
Info:    Reads filtered by duplicate: 31
Info:    Reads used: 103205
Info:    Reads filtered by duplicate: 67
Info:    Reads used: 128991
Info:    Reads filtered by duplicate: 99
Info:    Reads used: 154771
Info:    Reads filtered by duplicate: 137
Info:    3
Info:    Reads used: 25811
Info:    Reads filtered by duplicate: 7
Info:    Reads used: 51622
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 77416
Info:    Reads filtered by duplicate: 38
Info:    Reads used: 103198
Info:    Reads filtered by duplicate: 74
Info:    Reads used: 128972
Info:    Reads filtered by duplicate: 118
Info:    Reads used: 154742
Info:    Reads filtered by duplicate: 166
Info:    4
Info:    Reads used: 25812
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 51623
Info:    Reads filtered by duplicate: 13
Info:    Reads used: 77430
Info:    Reads filtered by duplicate: 24
Info:    Reads used: 103230
Info:    Reads filtered by duplicate: 42
Info:    Reads used: 129017
Info:    Reads filtered by duplicate: 73
Info:    Reads used: 154791
Info:    Reads filtered by duplicate: 117
Info:    5
Info:    Reads used: 25814
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 51628
Info:    Reads filtered by duplicate: 8
Info:    Reads used: 77427
Info:    Reads filtered by duplicate: 27
Info:    Reads used: 103221
Info:    Reads filtered by duplicate: 51
Info:    Reads used: 129002
Info:    Reads filtered by duplicate: 88
Info:    Reads used: 154775
Info:    Reads filtered by duplicate: 133
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_22.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 3
Info:    Reads used: 755866
Info:    Reads filtered by duplicate: 16917
Info:    Reads filtered by iterator: 2501732
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 3 Statistics
Info:    Estimated Chromosome Size :  199,431,765
Info:    Using Effective chr size of 0.9 * estimated size : 179,488,576
Info:    Observed Coverage         : 109,235,077
Info:    Generating random reads in batches of : 109,235
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 109221
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 218417
Info:    Reads filtered by duplicate: 53
Info:    Reads used: 327573
Info:    Reads filtered by duplicate: 132
Info:    Reads used: 436698
Info:    Reads filtered by duplicate: 242
Info:    Reads used: 545782
Info:    Reads filtered by duplicate: 393
Info:    Reads used: 654852
Info:    Reads filtered by duplicate: 558
Info:    2
Info:    Reads used: 109218
Info:    Reads filtered by duplicate: 17
Info:    Reads used: 218409
Info:    Reads filtered by duplicate: 61
Info:    Reads used: 327551
Info:    Reads filtered by duplicate: 154
Info:    Reads used: 436676
Info:    Reads filtered by duplicate: 264
Info:    Reads used: 545752
Info:    Reads filtered by duplicate: 423
Info:    Reads used: 654808
Info:    Reads filtered by duplicate: 602
Info:    3
Info:    Reads used: 109221
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 218410
Info:    Reads filtered by duplicate: 60
Info:    Reads used: 327553
Info:    Reads filtered by duplicate: 152
Info:    Reads used: 436681
Info:    Reads filtered by duplicate: 259
Info:    Reads used: 545775
Info:    Reads filtered by duplicate: 400
Info:    Reads used: 654803
Info:    Reads filtered by duplicate: 607
Info:    4
Info:    Reads used: 109218
Info:    Reads filtered by duplicate: 17
Info:    Reads used: 218409
Info:    Reads filtered by duplicate: 61
Info:    Reads used: 327567
Info:    Reads filtered by duplicate: 138
Info:    Reads used: 436687
Info:    Reads filtered by duplicate: 253
Info:    Reads used: 545788
Info:    Reads filtered by duplicate: 387
Info:    Reads used: 654848
Info:    Reads filtered by duplicate: 562
Info:    5
Info:    Reads used: 109214
Info:    Reads filtered by duplicate: 21
Info:    Reads used: 218399
Info:    Reads filtered by duplicate: 71
Info:    Reads used: 327535
Info:    Reads filtered by duplicate: 170
Info:    Reads used: 436654
Info:    Reads filtered by duplicate: 286
Info:    Reads used: 545771
Info:    Reads filtered by duplicate: 404
Info:    Reads used: 654809
Info:    Reads filtered by duplicate: 601
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_3.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 4
Info:    Reads used: 608865
Info:    Reads filtered by duplicate: 28009
Info:    Reads filtered by iterator: 2821134
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 4 Statistics
Info:    Estimated Chromosome Size :  191,263,040
Info:    Using Effective chr size of 0.9 * estimated size : 172,136,736
Info:    Observed Coverage         : 94,135,800
Info:    Generating random reads in batches of : 94,135
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 94123
Info:    Reads filtered by duplicate: 12
Info:    Reads used: 188220
Info:    Reads filtered by duplicate: 50
Info:    Reads used: 282286
Info:    Reads filtered by duplicate: 119
Info:    Reads used: 376332
Info:    Reads filtered by duplicate: 208
Info:    Reads used: 470350
Info:    Reads filtered by duplicate: 325
Info:    2
Info:    Reads used: 94124
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 188213
Info:    Reads filtered by duplicate: 57
Info:    Reads used: 282291
Info:    Reads filtered by duplicate: 114
Info:    Reads used: 376325
Info:    Reads filtered by duplicate: 215
Info:    Reads used: 470367
Info:    Reads filtered by duplicate: 308
Info:    3
Info:    Reads used: 94121
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 188216
Info:    Reads filtered by duplicate: 54
Info:    Reads used: 282286
Info:    Reads filtered by duplicate: 119
Info:    Reads used: 376336
Info:    Reads filtered by duplicate: 204
Info:    Reads used: 470353
Info:    Reads filtered by duplicate: 322
Info:    4
Info:    Reads used: 94121
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 188236
Info:    Reads filtered by duplicate: 34
Info:    Reads used: 282306
Info:    Reads filtered by duplicate: 99
Info:    Reads used: 376354
Info:    Reads filtered by duplicate: 186
Info:    Reads used: 470392
Info:    Reads filtered by duplicate: 283
Info:    5
Info:    Reads used: 94118
Info:    Reads filtered by duplicate: 17
Info:    Reads used: 188211
Info:    Reads filtered by duplicate: 59
Info:    Reads used: 282277
Info:    Reads filtered by duplicate: 128
Info:    Reads used: 376319
Info:    Reads filtered by duplicate: 221
Info:    Reads used: 470342
Info:    Reads filtered by duplicate: 333
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_4.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 5
Info:    Reads used: 660820
Info:    Reads filtered by duplicate: 14116
Info:    Reads filtered by iterator: 3001273
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 5 Statistics
Info:    Estimated Chromosome Size :  180,835,450
Info:    Using Effective chr size of 0.9 * estimated size : 162,751,904
Info:    Observed Coverage         : 96,744,376
Info:    Generating random reads in batches of : 96,744
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 96726
Info:    Reads filtered by duplicate: 18
Info:    Reads used: 193435
Info:    Reads filtered by duplicate: 53
Info:    Reads used: 290096
Info:    Reads filtered by duplicate: 136
Info:    Reads used: 386756
Info:    Reads filtered by duplicate: 220
Info:    Reads used: 483356
Info:    Reads filtered by duplicate: 364
Info:    Reads used: 579947
Info:    Reads filtered by duplicate: 517
Info:    2
Info:    Reads used: 96723
Info:    Reads filtered by duplicate: 21
Info:    Reads used: 193424
Info:    Reads filtered by duplicate: 64
Info:    Reads used: 290094
Info:    Reads filtered by duplicate: 138
Info:    Reads used: 386744
Info:    Reads filtered by duplicate: 232
Info:    Reads used: 483381
Info:    Reads filtered by duplicate: 339
Info:    Reads used: 579978
Info:    Reads filtered by duplicate: 486
Info:    3
Info:    Reads used: 96729
Info:    Reads filtered by duplicate: 15
Info:    Reads used: 193436
Info:    Reads filtered by duplicate: 52
Info:    Reads used: 290103
Info:    Reads filtered by duplicate: 129
Info:    Reads used: 386742
Info:    Reads filtered by duplicate: 234
Info:    Reads used: 483349
Info:    Reads filtered by duplicate: 371
Info:    Reads used: 579927
Info:    Reads filtered by duplicate: 537
Info:    4
Info:    Reads used: 96727
Info:    Reads filtered by duplicate: 17
Info:    Reads used: 193435
Info:    Reads filtered by duplicate: 53
Info:    Reads used: 290108
Info:    Reads filtered by duplicate: 124
Info:    Reads used: 386750
Info:    Reads filtered by duplicate: 226
Info:    Reads used: 483348
Info:    Reads filtered by duplicate: 372
Info:    Reads used: 579921
Info:    Reads filtered by duplicate: 543
Info:    5
Info:    Reads used: 96725
Info:    Reads filtered by duplicate: 19
Info:    Reads used: 193430
Info:    Reads filtered by duplicate: 58
Info:    Reads used: 290103
Info:    Reads filtered by duplicate: 129
Info:    Reads used: 386741
Info:    Reads filtered by duplicate: 235
Info:    Reads used: 483356
Info:    Reads filtered by duplicate: 364
Info:    Reads used: 579956
Info:    Reads filtered by duplicate: 508
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_5.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 6
Info:    Reads used: 641995
Info:    Reads filtered by duplicate: 20544
Info:    Reads filtered by iterator: 3164300
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 6 Statistics
Info:    Estimated Chromosome Size :  170,893,256
Info:    Using Effective chr size of 0.9 * estimated size : 153,803,920
Info:    Observed Coverage         : 93,020,096
Info:    Generating random reads in batches of : 93,020
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 93009
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 185993
Info:    Reads filtered by duplicate: 47
Info:    Reads used: 278941
Info:    Reads filtered by duplicate: 119
Info:    Reads used: 371859
Info:    Reads filtered by duplicate: 221
Info:    Reads used: 464757
Info:    Reads filtered by duplicate: 343
Info:    Reads used: 557617
Info:    Reads filtered by duplicate: 503
Info:    2
Info:    Reads used: 93005
Info:    Reads filtered by duplicate: 15
Info:    Reads used: 185995
Info:    Reads filtered by duplicate: 45
Info:    Reads used: 278949
Info:    Reads filtered by duplicate: 111
Info:    Reads used: 371863
Info:    Reads filtered by duplicate: 217
Info:    Reads used: 464760
Info:    Reads filtered by duplicate: 340
Info:    Reads used: 557586
Info:    Reads filtered by duplicate: 534
Info:    3
Info:    Reads used: 92998
Info:    Reads filtered by duplicate: 22
Info:    Reads used: 185987
Info:    Reads filtered by duplicate: 53
Info:    Reads used: 278944
Info:    Reads filtered by duplicate: 116
Info:    Reads used: 371877
Info:    Reads filtered by duplicate: 203
Info:    Reads used: 464784
Info:    Reads filtered by duplicate: 316
Info:    Reads used: 557670
Info:    Reads filtered by duplicate: 450
Info:    4
Info:    Reads used: 93011
Info:    Reads filtered by duplicate: 9
Info:    Reads used: 185993
Info:    Reads filtered by duplicate: 47
Info:    Reads used: 278954
Info:    Reads filtered by duplicate: 106
Info:    Reads used: 371880
Info:    Reads filtered by duplicate: 200
Info:    Reads used: 464786
Info:    Reads filtered by duplicate: 314
Info:    Reads used: 557639
Info:    Reads filtered by duplicate: 481
Info:    5
Info:    Reads used: 93008
Info:    Reads filtered by duplicate: 12
Info:    Reads used: 185993
Info:    Reads filtered by duplicate: 47
Info:    Reads used: 278936
Info:    Reads filtered by duplicate: 124
Info:    Reads used: 371875
Info:    Reads filtered by duplicate: 205
Info:    Reads used: 464775
Info:    Reads filtered by duplicate: 325
Info:    Reads used: 557636
Info:    Reads filtered by duplicate: 484
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_6.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 7
Info:    Reads used: 641404
Info:    Reads filtered by duplicate: 19579
Info:    Reads filtered by iterator: 3393019
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 7 Statistics
Info:    Estimated Chromosome Size :  158,821,419
Info:    Using Effective chr size of 0.9 * estimated size : 142,939,280
Info:    Observed Coverage         : 88,266,853
Info:    Generating random reads in batches of : 88,266
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 88256
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 176475
Info:    Reads filtered by duplicate: 57
Info:    Reads used: 264673
Info:    Reads filtered by duplicate: 125
Info:    Reads used: 352824
Info:    Reads filtered by duplicate: 240
Info:    Reads used: 440953
Info:    Reads filtered by duplicate: 377
Info:    Reads used: 529075
Info:    Reads filtered by duplicate: 521
Info:    2
Info:    Reads used: 88254
Info:    Reads filtered by duplicate: 12
Info:    Reads used: 176477
Info:    Reads filtered by duplicate: 55
Info:    Reads used: 264679
Info:    Reads filtered by duplicate: 119
Info:    Reads used: 352857
Info:    Reads filtered by duplicate: 207
Info:    Reads used: 440988
Info:    Reads filtered by duplicate: 342
Info:    Reads used: 529084
Info:    Reads filtered by duplicate: 512
Info:    3
Info:    Reads used: 88261
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 176481
Info:    Reads filtered by duplicate: 51
Info:    Reads used: 264692
Info:    Reads filtered by duplicate: 106
Info:    Reads used: 352873
Info:    Reads filtered by duplicate: 191
Info:    Reads used: 441023
Info:    Reads filtered by duplicate: 307
Info:    Reads used: 529120
Info:    Reads filtered by duplicate: 476
Info:    4
Info:    Reads used: 88255
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 176494
Info:    Reads filtered by duplicate: 38
Info:    Reads used: 264701
Info:    Reads filtered by duplicate: 97
Info:    Reads used: 352880
Info:    Reads filtered by duplicate: 184
Info:    Reads used: 441003
Info:    Reads filtered by duplicate: 327
Info:    Reads used: 529106
Info:    Reads filtered by duplicate: 490
Info:    5
Info:    Reads used: 88254
Info:    Reads filtered by duplicate: 12
Info:    Reads used: 176480
Info:    Reads filtered by duplicate: 52
Info:    Reads used: 264672
Info:    Reads filtered by duplicate: 126
Info:    Reads used: 352830
Info:    Reads filtered by duplicate: 234
Info:    Reads used: 440958
Info:    Reads filtered by duplicate: 372
Info:    Reads used: 529067
Info:    Reads filtered by duplicate: 529
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_7.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 8
Info:    Reads used: 567610
Info:    Reads filtered by duplicate: 13457
Info:    Reads filtered by iterator: 3561935
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 8 Statistics
Info:    Estimated Chromosome Size :  146,272,420
Info:    Using Effective chr size of 0.9 * estimated size : 131,645,168
Info:    Observed Coverage         : 80,893,576
Info:    Generating random reads in batches of : 80,893
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 80884
Info:    Reads filtered by duplicate: 9
Info:    Reads used: 161737
Info:    Reads filtered by duplicate: 49
Info:    Reads used: 242579
Info:    Reads filtered by duplicate: 100
Info:    Reads used: 323366
Info:    Reads filtered by duplicate: 206
Info:    Reads used: 404153
Info:    Reads filtered by duplicate: 312
Info:    Reads used: 484911
Info:    Reads filtered by duplicate: 447
Info:    2
Info:    Reads used: 80873
Info:    Reads filtered by duplicate: 20
Info:    Reads used: 161716
Info:    Reads filtered by duplicate: 70
Info:    Reads used: 242544
Info:    Reads filtered by duplicate: 135
Info:    Reads used: 323370
Info:    Reads filtered by duplicate: 202
Info:    Reads used: 404148
Info:    Reads filtered by duplicate: 317
Info:    Reads used: 484893
Info:    Reads filtered by duplicate: 465
Info:    3
Info:    Reads used: 80881
Info:    Reads filtered by duplicate: 12
Info:    Reads used: 161736
Info:    Reads filtered by duplicate: 50
Info:    Reads used: 242567
Info:    Reads filtered by duplicate: 112
Info:    Reads used: 323371
Info:    Reads filtered by duplicate: 201
Info:    Reads used: 404140
Info:    Reads filtered by duplicate: 325
Info:    Reads used: 484901
Info:    Reads filtered by duplicate: 457
Info:    4
Info:    Reads used: 80882
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 161738
Info:    Reads filtered by duplicate: 48
Info:    Reads used: 242564
Info:    Reads filtered by duplicate: 115
Info:    Reads used: 323349
Info:    Reads filtered by duplicate: 223
Info:    Reads used: 404121
Info:    Reads filtered by duplicate: 344
Info:    Reads used: 484879
Info:    Reads filtered by duplicate: 479
Info:    5
Info:    Reads used: 80883
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 161741
Info:    Reads filtered by duplicate: 45
Info:    Reads used: 242580
Info:    Reads filtered by duplicate: 99
Info:    Reads used: 323390
Info:    Reads filtered by duplicate: 182
Info:    Reads used: 404167
Info:    Reads filtered by duplicate: 298
Info:    Reads used: 484922
Info:    Reads filtered by duplicate: 436
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_8.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 9
Info:    Reads used: 511289
Info:    Reads filtered by duplicate: 14350
Info:    Reads filtered by iterator: 3741994
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 9 Statistics
Info:    Estimated Chromosome Size :  140,231,053
Info:    Using Effective chr size of 0.9 * estimated size : 126,207,944
Info:    Observed Coverage         : 66,693,478
Info:    Generating random reads in batches of : 66,693
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 66686
Info:    Reads filtered by duplicate: 7
Info:    Reads used: 133359
Info:    Reads filtered by duplicate: 27
Info:    Reads used: 200020
Info:    Reads filtered by duplicate: 59
Info:    Reads used: 266645
Info:    Reads filtered by duplicate: 127
Info:    Reads used: 333240
Info:    Reads filtered by duplicate: 225
Info:    2
Info:    Reads used: 66680
Info:    Reads filtered by duplicate: 13
Info:    Reads used: 133346
Info:    Reads filtered by duplicate: 40
Info:    Reads used: 199992
Info:    Reads filtered by duplicate: 87
Info:    Reads used: 266618
Info:    Reads filtered by duplicate: 154
Info:    Reads used: 333235
Info:    Reads filtered by duplicate: 230
Info:    3
Info:    Reads used: 66684
Info:    Reads filtered by duplicate: 9
Info:    Reads used: 133346
Info:    Reads filtered by duplicate: 40
Info:    Reads used: 199993
Info:    Reads filtered by duplicate: 86
Info:    Reads used: 266634
Info:    Reads filtered by duplicate: 138
Info:    Reads used: 333251
Info:    Reads filtered by duplicate: 214
Info:    4
Info:    Reads used: 66679
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 133349
Info:    Reads filtered by duplicate: 37
Info:    Reads used: 199994
Info:    Reads filtered by duplicate: 85
Info:    Reads used: 266626
Info:    Reads filtered by duplicate: 146
Info:    Reads used: 333250
Info:    Reads filtered by duplicate: 215
Info:    5
Info:    Reads used: 66686
Info:    Reads filtered by duplicate: 7
Info:    Reads used: 133344
Info:    Reads filtered by duplicate: 42
Info:    Reads used: 199998
Info:    Reads filtered by duplicate: 81
Info:    Reads used: 266625
Info:    Reads filtered by duplicate: 147
Info:    Reads used: 333245
Info:    Reads filtered by duplicate: 220
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_9.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : MT
Info:    Reads used: 9866
Info:    Reads filtered by duplicate: 10863
Info:    Reads filtered by iterator: 3747516
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome MT Statistics
Info:    Estimated Chromosome Size :       16,833
Info:    Using Effective chr size of 0.9 * estimated size : 15,149
Info:    Observed Coverage         : 16,833
Info:    Generating random reads in batches of : 100
Info:    ------------------------------------------------------------------------
Warning:  Coverage is greater than effective length! - use coverage as chromosome size.
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 100
Info:    Reads used: 200
Info:    2
Info:    Reads used: 100
Info:    Reads used: 200
Info:    3
Info:    Reads used: 100
Info:    Reads used: 200
Info:    4
Info:    Reads used: 100
Info:    Reads used: 199
Info:    Reads filtered by duplicate: 1
Info:    5
Info:    Reads used: 99
Info:    Reads filtered by duplicate: 1
Info:    Reads used: 199
Info:    Reads filtered by duplicate: 1
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_MT.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : X
Info:    Reads used: 277717
Info:    Reads filtered by duplicate: 6662
Info:    Reads filtered by iterator: 3928916
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome X Statistics
Info:    Estimated Chromosome Size :  154,913,717
Info:    Using Effective chr size of 0.9 * estimated size : 139,422,336
Info:    Observed Coverage         : 53,367,065
Info:    Generating random reads in batches of : 53,367
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 53364
Info:    Reads filtered by duplicate: 3
Info:    Reads used: 106706
Info:    Reads filtered by duplicate: 28
Info:    Reads used: 160050
Info:    Reads filtered by duplicate: 51
Info:    Reads used: 213372
Info:    Reads filtered by duplicate: 96
Info:    Reads used: 266696
Info:    Reads filtered by duplicate: 139
Info:    2
Info:    Reads used: 53360
Info:    Reads filtered by duplicate: 7
Info:    Reads used: 106716
Info:    Reads filtered by duplicate: 18
Info:    Reads used: 160057
Info:    Reads filtered by duplicate: 44
Info:    Reads used: 213393
Info:    Reads filtered by duplicate: 75
Info:    Reads used: 266716
Info:    Reads filtered by duplicate: 119
Info:    3
Info:    Reads used: 53358
Info:    Reads filtered by duplicate: 9
Info:    Reads used: 106710
Info:    Reads filtered by duplicate: 24
Info:    Reads used: 160040
Info:    Reads filtered by duplicate: 61
Info:    Reads used: 213375
Info:    Reads filtered by duplicate: 93
Info:    Reads used: 266703
Info:    Reads filtered by duplicate: 132
Info:    4
Info:    Reads used: 53362
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 106710
Info:    Reads filtered by duplicate: 24
Info:    Reads used: 160061
Info:    Reads filtered by duplicate: 40
Info:    Reads used: 213395
Info:    Reads filtered by duplicate: 73
Info:    Reads used: 266723
Info:    Reads filtered by duplicate: 112
Info:    5
Info:    Reads used: 53362
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 106720
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 160065
Info:    Reads filtered by duplicate: 36
Info:    Reads used: 213405
Info:    Reads filtered by duplicate: 63
Info:    Reads used: 266735
Info:    Reads filtered by duplicate: 100
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_X.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : Y
Info:    Reads used: 44402
Info:    Reads filtered by duplicate: 26882
Info:    Reads filtered by iterator: 6736413
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome Y Statistics
Info:    Estimated Chromosome Size :   57,442,845
Info:    Using Effective chr size of 0.9 * estimated size : 51,698,560
Info:    Observed Coverage         : 5,338,945
Info:    Generating random reads in batches of : 5,338
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 5338
Info:    Reads used: 10676
Info:    Reads used: 16013
Info:    Reads filtered by duplicate: 1
Info:    Reads used: 21350
Info:    Reads filtered by duplicate: 2
Info:    2
Info:    Reads used: 5338
Info:    Reads used: 10676
Info:    Reads used: 16014
Info:    Reads used: 21352
Info:    3
Info:    Reads used: 5338
Info:    Reads used: 10676
Info:    Reads used: 16012
Info:    Reads filtered by duplicate: 2
Info:    Reads used: 21350
Info:    Reads filtered by duplicate: 2
Info:    4
Info:    Reads used: 5338
Info:    Reads used: 10676
Info:    Reads used: 16013
Info:    Reads filtered by duplicate: 1
Info:    Reads used: 21350
Info:    Reads filtered by duplicate: 2
Info:    5
Info:    Reads used: 5338
Info:    Reads used: 10676
Info:    Reads used: 16013
Info:    Reads filtered by duplicate: 1
Info:    Reads used: 21350
Info:    Reads filtered by duplicate: 2
Info:    writing to : External/126/YY1_Rep1/FP4.0.15/s_4_lanes_FDR_mc_triangle_standard_Y.wig.gz