Info:    Log File: /projects/remc_bigdata/hES_H1/MeDIP_4L_HS1376_hg18_xset200_mapq10_min2_dupN_2010100414.log
Info:     * Output directory     : /projects/remc_bigdata/hES_H1/
Info:     * Naming files as      : MeDIP_4L_HS1376_hg18_xset200_mapq10_min2_dupN_2010100414
Info:     * MC simulation        : Off
Info:     * Chr name prepend     : chr
Info:     * Min. reported pk ht  : 2
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : maq
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * Maq file format      : 128bit reads (default value.  use -maq_read_size to override)
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : On
Info:     * Filter quality min.  : On (10)
Info:     * Input Files          : 
Info:          /archive/solexa1_5/analysis/HS1376/meta_maq/HS1376_4_lanes.map
Version: Initializing class PeakWriter                        $Revision: 1498 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 1600 $
Version: Initializing class MAQmapIterator                    $Revision: 1790 $
Info:    number of mapped reads in header: 40419362
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 1982 $
Version: Initializing class PeakStore                         $Revision: 1335 $
Version: Initializing class MapStore                          $Revision: 1335 $
Info:    Current chromosome : 1
Info:    Reads used: 2649690
Info:    Reads filtered by duplicate: 158012
Info:    Reads filtered by iterator: 1116880
Version: Initializing class PeakStats                         $Revision: 1335 $
Version: Initializing class Histogram                         $Revision: 1197 $
Version: Initializing class WigwriterBuffered                 $Revision: 1977 $
Info:    writing to : /projects/remc_bigdata/hES_H1/MeDIP_4L_HS1376_hg18_xset200_mapq10_min2_dupN_2010100414_triangle_standard_1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 10
Info:    Reads used: 1622720
Info:    Reads filtered by duplicate: 359405
Info:    Reads filtered by iterator: 2468874
Info:    Running Peak Processor
Info:    Current chromosome : 11
Info:    Reads used: 1541362
Info:    Reads filtered by duplicate: 45252
Info:    Reads filtered by iterator: 2926884
Info:    Running Peak Processor
Info:    Current chromosome : 12
Info:    Reads used: 1456159
Info:    Reads filtered by duplicate: 40378
Info:    Reads filtered by iterator: 3425218
Info:    Running Peak Processor
Info:    Current chromosome : 13
Info:    Reads used: 841645
Info:    Reads filtered by duplicate: 22993
Info:    Reads filtered by iterator: 3695146
Info:    Running Peak Processor
Info:    Current chromosome : 14
Info:    Reads used: 971298
Info:    Reads filtered by duplicate: 28706
Info:    Reads filtered by iterator: 4017888
Info:    Running Peak Processor
Info:    Current chromosome : 15
Info:    Reads used: 959792
Info:    Reads filtered by duplicate: 24452
Info:    Reads filtered by iterator: 4467704
Info:    Running Peak Processor
Info:    Current chromosome : 16
Info:    Reads used: 1470314
Info:    Reads filtered by duplicate: 109523
Info:    Reads filtered by iterator: 5455380
Info:    Running Peak Processor
Info:    Current chromosome : 17
Info:    Reads used: 1497479
Info:    Reads filtered by duplicate: 59385
Info:    Reads filtered by iterator: 6044536
Info:    Running Peak Processor
Info:    Current chromosome : 18
Info:    Reads used: 757878
Info:    Reads filtered by duplicate: 37844
Info:    Reads filtered by iterator: 6297278
Info:    Running Peak Processor
Info:    Current chromosome : 19
Info:    Reads used: 1408311
Info:    Reads filtered by duplicate: 69837
Info:    Reads filtered by iterator: 6892396
Info:    Running Peak Processor
Info:    Current chromosome : 2
Info:    Reads used: 2404478
Info:    Reads filtered by duplicate: 115335
Info:    Reads filtered by iterator: 7843780
Info:    Running Peak Processor
Info:    Current chromosome : 20
Info:    Reads used: 967974
Info:    Reads filtered by duplicate: 32840
Info:    Reads filtered by iterator: 8083032
Info:    Running Peak Processor
Info:    Current chromosome : 21
Info:    Reads used: 498326
Info:    Reads filtered by duplicate: 21170
Info:    Reads filtered by iterator: 8222616
Info:    Running Peak Processor
Info:    Current chromosome : 22
Info:    Reads used: 846996
Info:    Reads filtered by duplicate: 31260
Info:    Reads filtered by iterator: 8512538
Info:    Running Peak Processor
Info:    Current chromosome : 3
Info:    Reads used: 1722155
Info:    Reads filtered by duplicate: 53975
Info:    Reads filtered by iterator: 9128966
Info:    Running Peak Processor
Info:    Current chromosome : 4
Info:    Reads used: 1471029
Info:    Reads filtered by duplicate: 71395
Info:    Reads filtered by iterator: 10050460
Info:    Running Peak Processor
Info:    Current chromosome : 5
Info:    Reads used: 1573365
Info:    Reads filtered by duplicate: 40795
Info:    Reads filtered by iterator: 10724624
Info:    Running Peak Processor
Info:    Current chromosome : 6
Info:    Reads used: 1556881
Info:    Reads filtered by duplicate: 61723
Info:    Reads filtered by iterator: 11278526
Info:    Running Peak Processor
Info:    Current chromosome : 7
Info:    Reads used: 1759118
Info:    Reads filtered by duplicate: 68896
Info:    Reads filtered by iterator: 12089082
Info:    Running Peak Processor
Info:    Current chromosome : 8
Info:    Reads used: 1446847
Info:    Reads filtered by duplicate: 43627
Info:    Reads filtered by iterator: 12721290
Info:    Running Peak Processor
Info:    Current chromosome : 9
Info:    Reads used: 1371735
Info:    Reads filtered by duplicate: 45702
Info:    Reads filtered by iterator: 13365224
Info:    Running Peak Processor
Info:    Current chromosome : MT
Info:    Reads used: 9763
Info:    Reads filtered by duplicate: 14196
Info:    Reads filtered by iterator: 13372112
Info:    Running Peak Processor
Info:    Current chromosome : X
Info:    Reads used: 648566
Info:    Reads filtered by duplicate: 14100
Info:    Reads filtered by iterator: 13950454
Info:    Running Peak Processor
Info:    Current chromosome : Y
Info:    Reads used: 81724
Info:    Reads filtered by duplicate: 44952
Info:    Reads filtered by iterator: 14535810
Info:    Wrote to:/projects/remc_bigdata/hES_H1/MeDIP_4L_HS1376_hg18_xset200_mapq10_min2_dupN_2010100414_triangle_standard.wig.gz