This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by RNAforester configure 1.5, which was generated by GNU Autoconf 2.63. Invocation command line was $ ./configure --disable-option-checking --prefix=/projects/remc_bigdata/TCGA/RNA/ViennaRNA-2.0.0 --cache-file=/dev/null --srcdir=. ## --------- ## ## Platform. ## ## --------- ## hostname = xhost09.bcgsc.ca uname -m = x86_64 uname -r = 2.6.18-194.3.1.el5 uname -s = Linux uname -v = #1 SMP Thu May 13 13:08:30 EDT 2010 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/lib/python2.6/site-packages PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/lib PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/bin PATH: /home/grobertson/linux_x86_64/libxml2/libxml2-2.7.3/bin PATH: /home/grobertson/linux_x86_64/libxml2/libxml2-2.7.3/lib PATH: /home/grobertson/linux_x86_64/samtools/samtools-0.1.12a PATH: /home/grobertson/linux_x86_64/ruby/ruby-1.8.7-p302/bin PATH: /home/grobertson/linux_x86_64/ruby/rubygems-1.3.5/bin PATH: /home/grobertson/linux_x86_64/Git/git-1.6.5.1/bin PATH: /home/grobertson/bin/x86_64 PATH: /home/grobertson/linux_x86_64/pysam/pysam-0.2/pysam PATH: /home/grobertson/linux_x86_64/Pyrex/bin PATH: /home/grobertson/linux_x86_64/Hg/bin PATH: /home/grobertson/linux_x86_64/zlib/zlib-1.2.3 PATH: /home/grobertson/Pairagon/gmap-2007-09-28/bin PATH: /home/grobertson/linux_x86_64/glib/glib-2.20.3/bin PATH: /home/grobertson/linux_x86_64/Hg/mercurial-1.3.1 PATH: /home/grobertson/linux_x86_64/boost/boost_1_42_0/boost PATH: /home/grobertson/linux_x86_64/BLAT/blatSrc/bin/x86_64-redhat-linux-gnu PATH: /home/grobertson/linux_x86_64/perl_5.10/bin PATH: /usr/lib/pkgconfig PATH: /home/grobertson/linux_x86_64/R/R-2.12.1/bin PATH: /home/grobertson/linux_x86_64/R/R-2.12.1/etc PATH: /home/grobertson/apache-ant-1.7.1/bin PATH: /home/grobertson/linux_x86_64/Cufflinks/tophat-1.0.13/bin PATH: /home/grobertson/linux_x86_64/Cufflinks/bowtie-0.12.5 PATH: /home/grobertson/linux_x86_64/Cufflinks/cufflinks-0.8.2.Linux_x86_64 PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/bin PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/lib PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/include/gsl PATH: #{JAVA_HOME}/usr/bin PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /home/grobertson/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:1898: checking for a BSD-compatible install configure:1966: result: /usr/bin/install -c configure:1977: checking whether build environment is sane configure:2037: result: yes configure:2178: checking for a thread-safe mkdir -p configure:2217: result: /bin/mkdir -p configure:2230: checking for gawk configure:2246: found /bin/gawk configure:2257: result: gawk configure:2268: checking whether make sets $(MAKE) configure:2290: result: yes configure:2434: checking for g++ configure:2450: found /usr/bin/g++ configure:2461: result: g++ configure:2488: checking for C++ compiler version configure:2496: g++ --version >&5 g++ (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2500: $? = 0 configure:2507: g++ -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-48) configure:2511: $? = 0 configure:2518: g++ -V >&5 g++: '-V' option must have argument configure:2522: $? = 1 configure:2545: checking for C++ compiler default output file name configure:2567: g++ conftest.cpp >&5 configure:2571: $? = 0 configure:2609: result: a.out configure:2628: checking whether the C++ compiler works configure:2638: ./a.out configure:2642: $? = 0 configure:2661: result: yes configure:2668: checking whether we are cross compiling configure:2670: result: no configure:2673: checking for suffix of executables configure:2680: g++ -o conftest conftest.cpp >&5 configure:2684: $? = 0 configure:2710: result: configure:2716: checking for suffix of object files configure:2742: g++ -c conftest.cpp >&5 configure:2746: $? = 0 configure:2771: result: o configure:2775: checking whether we are using the GNU C++ compiler configure:2804: g++ -c conftest.cpp >&5 configure:2811: $? = 0 configure:2828: result: yes configure:2837: checking whether g++ accepts -g configure:2867: g++ -c -g conftest.cpp >&5 configure:2874: $? = 0 configure:2975: result: yes configure:3009: checking for style of include used by make configure:3037: result: GNU configure:3062: checking dependency style of g++ configure:3172: result: gcc3 configure:3235: checking for gcc configure:3251: found /usr/bin/gcc configure:3262: result: gcc configure:3494: checking for C compiler version configure:3502: gcc --version >&5 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3506: $? = 0 configure:3513: gcc -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-48) configure:3517: $? = 0 configure:3524: gcc -V >&5 gcc: '-V' option must have argument configure:3528: $? = 1 configure:3531: checking whether we are using the GNU C compiler configure:3560: gcc -c conftest.c >&5 configure:3567: $? = 0 configure:3584: result: yes configure:3593: checking whether gcc accepts -g configure:3623: gcc -c -g conftest.c >&5 configure:3630: $? = 0 configure:3731: result: yes configure:3748: checking for gcc option to accept ISO C89 configure:3822: gcc -c -g -O2 conftest.c >&5 configure:3829: $? = 0 configure:3852: result: none needed configure:3872: checking dependency style of gcc configure:3982: result: gcc3 configure:4014: checking for gcc option to support OpenMP configure:4034: g++ -o conftest -g -O2 conftest.cpp >&5 conftest.cpp:3: error: 'choke' does not name a type /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:41: error: expected constructor, destructor, or type conversion before ';' token /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:68: error: variable or field 'omp_init_lock' declared void /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:68: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:68: error: expected primary-expression before ')' token /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:69: error: variable or field 'omp_destroy_lock' declared void /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:69: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:69: error: expected primary-expression before ')' token /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:70: error: variable or field 'omp_set_lock' declared void /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:70: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:70: error: expected primary-expression before ')' token /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:71: error: variable or field 'omp_unset_lock' declared void /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:71: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:71: error: expected primary-expression before ')' token /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:72: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/omp.h:72: error: expected primary-expression before ')' token configure:4041: $? = 1 configure: failed program was: | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:4073: g++ -o conftest -g -O2 -fopenmp conftest.cpp >&5 configure:4080: $? = 0 configure:4110: result: -fopenmp configure:4139: result: using (to be built) libRNA.a in ../lib configure:4318: checking for main in -lgd configure:4347: g++ -o conftest -g -O2 -Ig2-0.70/src/ -L../../lib -fopenmp conftest.cpp -lgd -lRNA >&5 /usr/bin/ld: cannot find -lRNA collect2: ld returned 1 exit status configure:4354: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "RNAforester" | #define PACKAGE_TARNAME "RNAforester" | #define PACKAGE_VERSION "1.5" | #define PACKAGE_STRING "RNAforester 1.5" | #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de" | #define PACKAGE "RNAforester" | #define VERSION "1.5" | #define HAVE_LIBRNA 1 | /* end confdefs.h. */ | | | int | main () | { | return main (); | ; | return 0; | } configure:4375: result: no configure:4392: checking how to run the C++ preprocessor configure:4428: g++ -E -Ig2-0.70/src/ conftest.cpp configure:4435: $? = 0 configure:4466: g++ -E -Ig2-0.70/src/ conftest.cpp conftest.cpp:11:28: error: ac_nonexistent.h: No such file or directory configure:4473: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "RNAforester" | #define PACKAGE_TARNAME "RNAforester" | #define PACKAGE_VERSION "1.5" | #define PACKAGE_STRING "RNAforester 1.5" | #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de" | #define PACKAGE "RNAforester" | #define VERSION "1.5" | #define HAVE_LIBRNA 1 | /* end confdefs.h. */ | #include configure:4506: result: g++ -E configure:4535: g++ -E -Ig2-0.70/src/ conftest.cpp configure:4542: $? = 0 configure:4573: g++ -E -Ig2-0.70/src/ conftest.cpp conftest.cpp:11:28: error: ac_nonexistent.h: No such file or directory configure:4580: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "RNAforester" | #define PACKAGE_TARNAME "RNAforester" | #define PACKAGE_VERSION "1.5" | #define PACKAGE_STRING "RNAforester 1.5" | #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de" | #define PACKAGE "RNAforester" | #define VERSION "1.5" | #define HAVE_LIBRNA 1 | /* end confdefs.h. */ | #include configure:4620: checking for grep that handles long lines and -e configure:4680: result: /bin/grep configure:4685: checking for egrep configure:4749: result: /bin/grep -E configure:4754: checking for ANSI C header files configure:4784: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 configure:4791: $? = 0 configure:4890: g++ -o conftest -g -O2 -Ig2-0.70/src/ -L../../lib -fopenmp conftest.cpp -lRNA >&5 /usr/bin/ld: cannot find -lRNA collect2: ld returned 1 exit status configure:4894: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "RNAforester" | #define PACKAGE_TARNAME "RNAforester" | #define PACKAGE_VERSION "1.5" | #define PACKAGE_STRING "RNAforester 1.5" | #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de" | #define PACKAGE "RNAforester" | #define VERSION "1.5" | #define HAVE_LIBRNA 1 | /* end confdefs.h. */ | #include | #include | #if ((' ' & 0x0FF) == 0x020) | # define ISLOWER(c) ('a' <= (c) && (c) <= 'z') | # define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) | #else | # define ISLOWER(c) (('a' <= (c) && (c) <= 'i') || ('j' <= (c) && (c) <= 'r') || ('s' <= (c) && (c) <= 'z')) | # define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c)) | #endif | | #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) | int | main () | { | int i; | for (i = 0; i < 256; i++) | if (XOR (islower (i), ISLOWER (i)) | || toupper (i) != TOUPPER (i)) | return 2; | return 0; | } configure:4922: result: no configure:4946: checking for sys/types.h configure:4967: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 configure:4974: $? = 0 configure:4991: result: yes configure:4946: checking for sys/stat.h configure:4967: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 configure:4974: $? = 0 configure:4991: result: yes configure:4946: checking for stdlib.h configure:4967: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 configure:4974: $? = 0 configure:4991: result: yes configure:4946: checking for string.h configure:4967: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 configure:4974: $? = 0 configure:4991: result: yes configure:4946: checking for memory.h configure:4967: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 configure:4974: $? = 0 configure:4991: result: yes configure:4946: checking for strings.h configure:4967: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 configure:4974: $? = 0 configure:4991: result: yes configure:4946: checking for inttypes.h configure:4967: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 configure:4974: $? = 0 configure:4991: result: yes configure:4946: checking for stdint.h configure:4967: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 configure:4974: $? = 0 configure:4991: result: yes configure:4946: checking for unistd.h configure:4967: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 configure:4974: $? = 0 configure:4991: result: yes configure:5015: checking g2.h usability configure:5032: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 configure:5039: $? = 0 configure:5053: result: yes configure:5057: checking g2.h presence configure:5072: g++ -E -Ig2-0.70/src/ conftest.cpp configure:5079: $? = 0 configure:5093: result: yes configure:5126: checking for g2.h configure:5133: result: yes configure:5150: checking for an ANSI C-conforming const configure:5225: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 configure:5232: $? = 0 configure:5247: result: yes configure:5257: checking for inline configure:5283: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 configure:5290: $? = 0 configure:5308: result: inline configure:5327: checking for size_t configure:5355: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 configure:5362: $? = 0 configure:5389: g++ -c -g -O2 -Ig2-0.70/src/ conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:57: error: expected primary-expression before ')' token configure:5396: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "RNAforester" | #define PACKAGE_TARNAME "RNAforester" | #define PACKAGE_VERSION "1.5" | #define PACKAGE_STRING "RNAforester 1.5" | #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de" | #define PACKAGE "RNAforester" | #define VERSION "1.5" | #define HAVE_LIBRNA 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_LIBG2 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:5419: result: yes configure:5582: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by RNAforester config.status 1.5, which was generated by GNU Autoconf 2.63. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on xhost09.bcgsc.ca config.status:782: creating Makefile config.status:782: creating src/Makefile config.status:782: creating man/Makefile config.status:782: creating config.h config.status:1056: executing depfiles commands configure:6986: === configuring in g2-0.70 (/projects/remc_bigdata/TCGA/RNA/ViennaRNA-2.0.0/RNAforester/g2-0.70) configure:7089: running /bin/sh ./configure --disable-option-checking '--prefix=/projects/remc_bigdata/TCGA/RNA/ViennaRNA-2.0.0' --cache-file=/dev/null --srcdir=. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_header_g2_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=no ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_lib_gd_main=no ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_cxx_openmp=-fopenmp ac_cv_prog_make_make_set=yes ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /projects/remc_bigdata/TCGA/RNA/ViennaRNA-2.0.0/RNAforester/missing --run aclocal-1.11' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /projects/remc_bigdata/TCGA/RNA/ViennaRNA-2.0.0/RNAforester/missing --run tar' AUTOCONF='${SHELL} /projects/remc_bigdata/TCGA/RNA/ViennaRNA-2.0.0/RNAforester/missing --run autoconf' AUTOHEADER='${SHELL} /projects/remc_bigdata/TCGA/RNA/ViennaRNA-2.0.0/RNAforester/missing --run autoheader' AUTOMAKE='${SHELL} /projects/remc_bigdata/TCGA/RNA/ViennaRNA-2.0.0/RNAforester/missing --run automake-1.11' AWK='gawk' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2' CPPFLAGS=' -I../g2-0.70/include/ ' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' GREP='/bin/grep' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LDFLAGS='-L../g2-0.70 -L../../lib -fopenmp' LIBOBJS='' LIBS='-lg2 -lRNA ' LTLIBOBJS='' MAKEINFO='${SHELL} /projects/remc_bigdata/TCGA/RNA/ViennaRNA-2.0.0/RNAforester/missing --run makeinfo' MKDIR_P='/bin/mkdir -p' OBJEXT='o' OPENMP_CXXFLAGS='-fopenmp' PACKAGE='RNAforester' PACKAGE_BUGREPORT='mhoechsm@techfak.uni-bielefeld.de' PACKAGE_NAME='RNAforester' PACKAGE_STRING='RNAforester 1.5' PACKAGE_TARNAME='RNAforester' PACKAGE_VERSION='1.5' PATH_SEPARATOR=':' SET_MAKE='' SHELL='/bin/sh' STRIP='' VERSION='1.5' ac_ct_CC='gcc' ac_ct_CXX='g++' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build_alias='' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host_alias='' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /projects/remc_bigdata/TCGA/RNA/ViennaRNA-2.0.0/RNAforester/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/projects/remc_bigdata/TCGA/RNA/ViennaRNA-2.0.0' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' g2-0.70' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define PACKAGE_NAME "RNAforester" #define PACKAGE_TARNAME "RNAforester" #define PACKAGE_VERSION "1.5" #define PACKAGE_STRING "RNAforester 1.5" #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de" #define PACKAGE "RNAforester" #define VERSION "1.5" #define HAVE_LIBRNA 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_LIBG2 1 configure: exit 0