ELF> 9@@AUIATUSHxHIL1&LHHD)LhHcH{&H9¸CHt ;tHAHʈHzu~.t99tH=1LHL[]A\A]É-fDfDAWAVAUATUSHLd$0HDŽ$HDŽ$HDŽ$xHDŽ$pL D$E4D$ED$E$$D$ESD$ E3D$$1EɉD$  D$1E $D$ d$fWD$$t $$AE1; $D$$tH~.D$$H$t $dEY ED$(/ LHtHH!E1H;-Hti1,tWHHcH WHEHc҈ t+:Nt#HHc׈ NGHH HuH=D$D$D$D%EED$D$gfffl$ D$ )‰T$,L$H$xH$H$H$Hl$H$ 1H$HH$xAIƅH$H$xH$pHDŽ$p҃>H$p69H$pt H$p1HHA9!*UHLHcD\$ EH$DT$Et&Dp)1D EM>5fWL$f.v $ EPH$IcxHLHHH$H ZX YY ^ ^A*^HLHEJH$HH1,H$HH߃HD9aEuH$HZ$L$`$YD$pZX,ЉT$ u$D$ ED$EuƋ$$8ۉFŋ$D$ED$H$EHDD$$EfWL$f.*L$ ^ X L$H=H$pHtH$HtH$LH$xHt/H8HtH$xH<HHuHL$HDŽ$pHDŽ$HDŽ$HDŽ$xT$(H$)|$(EH$H LT$ t$$1ۅu1fD1HH9\$,}@H$pHhtH$HT$ H$ 1@H$'=t H$ZHpHſ^HEHpHt5H] fDZ^HsHHHuH=H}HtHH{HHuHWƄ$ sD1HĘ1[]A\A]A^A_H$H LT$ %D$(]NH=9D$(D5EtqD$D$D$H$H:H$HHsA%뜿m% : ; I$ > $ >   I : ;  : ;I8 &I : ; : ; I8 I !I/  : ;  : ; .: ;' I@: ;I4: ;I4: ;I.: ;' : ;I4: ;I.? : ; ' I@: ; I4: ; I 4: ; I4: ; I4: ; I4: ; I U U ! "1UX Y#1$41%4: ; I&4: ; I? < '!I/ 8intiih. b##### #(#0#8#@#H#P#X#`!#h#b#p'b#t)p#x-F#.T#/#3#<{#E#F#G#H#I-#Kb#M#n  # # b#z  s  $ # #z' (h# )h# *h# +h# ,b# -h#( .b#0 /h#8 0#@ 1#H 2h#P 3#X 4#` 5h#h 6b#p 7h#x 8b# 9# :h# ;# <# =h# >b# ?h# @b# Ah# Bb# Ch# D# E# Fh# Gb# Hh# Ib# J# Kh# Lb# Mh# Nb# Oh# Pb# Qh# Rb# Sh# T# U# Vh# W# X# Yh# [M# \M# ]M# ^M# _M# `M# aM# bM# cM# dM# eM# fM# gM# hM# iM# jM# kM# lM# mM# nM# oM# pM# qM#21pos33cut4bJJiKb$ bb/5z M!MP!M" ~c"""""/####i$b$bl$bcl$bsym$b$b%%&b&b&b&bdos&b&b cpbM4 mfekTsss W ib!zrib" #$ O 5% &&&&b& sb& b& b& b& 6b& ;b& @b& Gb& g& o& & b& /b b'& 1 & 6 ./../H/usr/include/usr/include/bits/usr/lib/gcc/x86_64-redhat-linux/4.1.2/includeRNAsubopt.cdata_structures.hRNAsubopt_cmdl.hstdio.hlibio.htypes.hstddef.hpart_func.hfold_vars.hsubopt.h Ɂ=;=g=;==u. Z9?Y~~f:rh,>vtdrv,hr:v5X!!Ʉ'F$ן/ $ME(XrJ <ggK;@W<M<~HMrJtH7JoVYy%scut_point = %d cut = %d >%42slength = %d length1 = %d length2 = %d > %s [%d] %4d %6d %s [%.2f] more than one cut-point in inputSequence and Structure have different cut points.Sorry, zuker subopts not yet implemented for circfoldCan't do zuker subopts and stochastic subopts at the same timeUse '&' to connect 2 sequences that shall form a complex.Input sequence (upper or lower case) followed by structure constraint cut point in sequence and structure constraint differsstructure constraint is missingstructure constraint is shorter than sequencestructure constraint is too longSorry, zuker subopts not yet implemented for cofold B?Y@MbP?{Gzfffffq@%zr?@@x ,BEA A(D0<5 BBB B(A0A8GzRx $BEA A(D04D5 BBB B(A0A8Gwww w w( w0U]]?BPBSS"%P%/Q/\\QVVwwww  w(  w0 w85 wbUbTz& z3 Q z zT TB""BUB  U  U 5 ^ ^ & ^3 Q ^&VBV)VVV V V 2 V V 3 VQ 5 VzSS  S S S& 3 SQ S 5 S##U##Q#/P?fQpPQ&VBV)VV V V 2 V V & V\ \ & \3 Q \&VBVPVV V V 2 V V & V3 = P= B VB L PL Q VX Xz& z3 Q z z>zazz z a z 5 zz z 5 zj_ _ _ 5 _z z 5 zz& z. z $ zSPUVU VzSSxS S  S S Si y T&VBV)VV V V V & V main,5 )3 Q  ' / 2 ' / 2 logML_givensize_tzuker_IO_save_enddos_givendeltaEnergy_argnoLP_given_IO_write_basefull_help_given_lockargvparamFile_argistty_IO_save_basenonstandardsSOLUTIONsubopt_sortedversion_help_chaindetailed_help_help_cur_columnn_back_modefold_constraineddetailed_help_givenlong intnoTetra_flagpfScale_givenpfScale_orig_IO_markermainshort unsigned intcopydeltaEnergy_givendangles_helpfull_help_helpenergyhelp_helpRNAsubopt.csigned char_IO_FILEsorted_helpunsigned charargs_info_sbufinput_stringparamFile_helpcharsorted_givendos_flag_IO_lock_tnoconvdangles_argdangles_origdangles_givenzukersolution_IO_read_ptrdoublecircular_posstdinnsp_arg_markersconstraint_givenrec_typelogML_flagtemp_givennoGUGNU C 4.1.2 20080704 (Red Hat 4.1.2-48)zuker_givendensity_of_statesnoTetra_helpinput_typecoptionslong unsigned intdeltaEnergyPost_helpns_bases/projects/remc_bigdata/TCGA/RNA/ViennaRNA-2.0.0/Progs_flags2_IO_read_baseparamFile_given_unused2cstrucdanglesnoClosingGU_given_old_offsetno_closingGUdo_backtrackrec_restlinetokenizercsidlong long intrec_id_IO_write_enddeltaEnergyPost_arg$Id: RNAsubopt.c,v 1.20 2008/12/03 16:55:44 ivo Exp $_IO_buf_base_nextunsigned intsorted_flagdeltaEnergyPost_origParamFile__pad1__pad2__pad3__pad4__pad5noconv_givenstochBT_origstochBT_help_flagsRNAsubopt_args_infonoGU_flagstochBT_argst_backconstraint_helpnoconv_helpnoClosingGU_helpnsp_given_offsetnoconv_flagnoClosingGU_flaglong long unsigned intpf_scalepfScale_helplogML_helplength__off_tstructuredeltaversion_givendeltaEnergy_helpread_optconstraint_flag_IO_backup_basezuker_flag_shortbuftemperatureargc__off64_tlogMLtemp_argdeltaEnergy_origdeltafcirc_given_IO_buf_endnoGU_givenstderrshort intnoGU_helptetra_loopnoLP_helphelp_givenputoutzuker_vtable_offsetrec_sequencefnamedeltaEnergyPost_givennoLP_flagpfScale_argdeltapdos_help_IO_read_endnsp_origtemp_help_filenonsp_helpzuker_helpstochBT_givenfloatstdoutprint_energy_IO_write_ptrnoLonelyPairscut_pointtemp_origcirc_helpparamFile_origcirc_flagnoTetra_givenGCC: (GNU) 4.1.2 20080704 (Red Hat 4.1.2-48).symtab.strtab.shstrtab.rela.text.data.bss.debug_abbrev.rela.debug_info.rela.debug_line.rodata.str1.1.rodata.str1.8.rodata.cst4.rodata.cst8.rela.debug_frame.rela.eh_frame.debug_loc.rela.debug_pubnames.rela.debug_aranges.debug_ranges.debug_str.comment.note.GNU-stack @5 K&x ,x 1x Dr ?`ZxUJPoa2ip2pE8o` xPp0 -p.0p0C. 0c/h7.77 @@ H      " (( 0. 3 8 > DKQX_gqx5  &->JX`ls{4@L^hpRNAsubopt.ctokenize.LC23.LC22.LC24.LC25.LC4.LC5.LC19.LC20strlenspacesscanfstrchrnrerrorcut_pointstderrfprintffreemaindo_backtrackdanglesRNAsubopt_cmdline_parsersubopt_sortedprint_energylogMLRNAsubopt_cmdline_parser_freeread_parameter_filenonstandardsstdoutfilenoisattyfold_constrainedread_recordgetConstraintstrncpystr_RNA2RNAprintfst_backfoldtemperatureexppf_scalepf_circ_foldpbacktrack_circputspbacktrackno_closingGUnoGUnoLonelyPairstetra_loopfree_pf_arraysfflushprint_tty_constraintprint_tty_input_seq_strstr_DNA2RNAsubopt_circdensity_of_stateswarn_userpf_foldprint_tty_input_seqzukersuboptsuboptstdininit_rand__strdupRNAsubopt_cmdline_parser_print_helpexit + 8!Rn!x }"#$ % ("&#()^*K+,-./ 0+0B0_0s0123457 > L#epv4#6# `"%7@8P#d /p9w-),:7 ;<&.6H=Y>^7w?&@A&BC)DFEk)F4<G1!H3&E&R&Z&y&&4I  J K; 1G Lc Ml Uu 9  N O J 9 P A #  "# Q3 ^@ E 9e ^r w 9 1 H & & A " 9 1 R4 9 NC H "T SY 2` 3{ 4 I  J T U U P  A  N V W% `* N/ V  5  % ) .  9 V@ G aN U \ j  q %|  V   Q    K  d ! 0 ? uN ] l {      E  j    ( 8 #H X t : Q     O    -% : XC Q _ m { e    0  K r  h  # v2 7A DP _ Dn } P 7 1     -  ) 5" L1 X@ O }^ $m l|      u A    ! .0  ? ZN =] l *{ y g $  6  &   Z e  @/ > M \ k  @  ;   t  v 9 s \$5 , 1 ; ]@ pJ O ^ Bi v \  a   T ] = 2  -   6 }  " , C HR bW a f q {  7    E  [     M @ 1 ! .  9 ` A  R 5 X  `  s X   I       # + 8 E R _ l y   %  #  L P H