Version: Vancouver Short Read Analysis Package                4.0.15
Version: Initializing class ConvertToBed                      $Revision: 2318 $
Info:    Log file: /projects/remc_bigdata/S_cere/SC0007/ConvertToBed.log
Info:     * Output path name  : /projects/remc_bigdata/S_cere/SC0007/
Info:     * Output file name  : SC0007-Fpr3-ko_sacCer7
Info:     * aligner           : sam
Info:     * Junctions         : Skipped
Info:     * Chr names         : names will be printed
Info:     * Prepend chr       : no prepend
Info:     * Minimum quality   : 10
Info:    Files in use:
Info:    	/archive/solexa1_4/analysis/SC0007/FC6360_2/bwa/FC6360_2.fastq.bam
Version: Initializing class Log_Buffer                        $Revision: 2530 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 2723 $
Version: Initializing class SAMIterator                       $Revision: 2770 $
Version: Initializing class BedWriter                         $Revision: 2530 $
Info:    1000000 reads processed
Info:    2000000 reads processed
Info:    3000000 reads processed